Wall clock time and date at job start Sat Apr 11 2020 07:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 120.00293 * 2 1 4 4 H 1.48499 * 109.46977 * 270.00303 * 3 2 1 5 5 H 1.48502 * 109.46765 * 30.00445 * 3 2 1 6 6 H 1.48498 * 109.46903 * 150.00316 * 3 2 1 7 7 C 1.38948 * 119.99571 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00101 * 359.97438 * 7 2 1 9 9 N 1.37107 * 119.99914 * 179.97438 * 7 2 1 10 10 C 1.34774 * 119.99605 * 179.71941 * 9 7 2 11 11 O 1.21285 * 120.00499 * 0.02562 * 10 9 7 12 12 C 1.50707 * 119.99550 * 180.02562 * 10 9 7 13 13 N 1.46897 * 109.46917 * 180.02562 * 12 10 9 14 14 C 1.46899 * 110.99871 * 175.16491 * 13 12 10 15 15 C 1.52997 * 115.54983 * 65.27037 * 14 13 12 16 16 N 1.46498 * 109.47452 * 83.96992 * 15 14 13 17 17 C 1.34775 * 120.00067 * 174.96304 * 16 15 14 18 18 O 1.21279 * 120.00187 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.99920 * 180.02562 * 17 16 15 20 20 H 1.08994 * 110.43049 * 302.54247 * 19 17 16 21 21 C 1.54893 * 110.48537 * 65.22226 * 19 17 16 22 22 C 1.54890 * 102.74670 * 156.62425 * 21 19 17 23 23 C 1.54268 * 104.19504 * 322.05804 * 22 21 19 24 24 F 1.39901 * 110.03125 * 264.32569 * 23 22 21 25 25 F 1.39901 * 110.03443 * 142.89870 * 23 22 21 26 26 C 1.53873 * 106.60045 * 23.60949 * 23 22 21 27 27 C 1.53006 * 117.50074 * 279.59970 * 14 13 12 28 28 C 1.53004 * 117.49979 * 210.94131 * 14 13 12 29 29 H 0.97005 * 119.99445 * 359.97438 * 1 2 3 30 30 H 0.96998 * 119.99461 * 0.02562 * 9 7 2 31 31 H 1.09004 * 109.46937 * 300.00376 * 12 10 9 32 32 H 1.09001 * 109.46801 * 60.00280 * 12 10 9 33 33 H 1.00900 * 110.99967 * 51.21765 * 13 12 10 34 34 H 1.09003 * 109.46900 * 203.97294 * 15 14 13 35 35 H 1.08998 * 109.47400 * 323.96768 * 15 14 13 36 36 H 0.97000 * 119.99464 * 354.96916 * 16 15 14 37 37 H 1.08998 * 110.75765 * 274.93685 * 21 19 17 38 38 H 1.08995 * 110.75610 * 38.30945 * 21 19 17 39 39 H 1.09004 * 110.48530 * 203.38382 * 22 21 19 40 40 H 1.08995 * 110.48940 * 80.73260 * 22 21 19 41 41 H 1.08997 * 110.03683 * 240.71905 * 26 23 22 42 42 H 1.08996 * 110.07130 * 119.30617 * 26 23 22 43 43 H 1.09001 * 117.49715 * 0.02562 * 27 14 13 44 44 H 1.09001 * 117.50018 * 145.01842 * 27 14 13 45 45 H 1.08998 * 117.49651 * 214.98047 * 28 14 13 46 46 H 1.08994 * 117.49845 * 359.97245 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4457 2.6526 0.7002 6 1 3.5458 1.4400 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 1.4687 -2.1386 -0.0005 9 7 3.3799 -1.2035 -0.0011 10 6 4.0536 -2.3707 0.0041 11 8 3.4471 -3.4210 0.0088 12 6 5.5607 -2.3708 0.0041 13 7 6.0502 -3.7558 0.0097 14 6 7.5141 -3.7971 -0.1058 15 6 8.2860 -3.1986 1.0718 16 7 8.4210 -4.2038 2.1289 17 6 9.1555 -3.9335 3.2261 18 8 9.7051 -2.8583 3.3381 19 6 9.2948 -4.9679 4.3132 20 1 8.3142 -5.2579 4.6903 21 6 10.0647 -6.2053 3.7886 22 6 10.6314 -6.8310 5.0873 23 6 11.0268 -5.6158 5.9515 24 9 12.3866 -5.3318 5.7854 25 9 10.7521 -5.8758 7.2984 26 6 10.1770 -4.4312 5.4593 27 6 8.1175 -3.6338 -1.5023 28 6 8.1329 -5.0024 -0.8167 29 1 -0.4849 0.8401 0.0004 30 1 3.8648 -0.3634 -0.0007 31 1 5.9240 -1.8609 -0.8881 32 1 5.9240 -1.8530 0.8919 33 1 5.6144 -4.2962 -0.7225 34 1 9.2758 -2.8881 0.7371 35 1 7.7458 -2.3346 1.4589 36 1 7.9817 -5.0640 2.0390 37 1 9.3877 -6.8985 3.2894 38 1 10.8718 -5.9037 3.1211 39 1 11.5062 -7.4425 4.8659 40 1 9.8674 -7.4240 5.5900 41 1 10.8239 -3.6351 5.0909 42 1 9.5505 -4.0581 6.2694 43 1 7.4284 -3.4953 -2.3353 44 1 9.0647 -3.1003 -1.5820 45 1 9.0901 -5.3686 -0.4457 46 1 7.4539 -5.7648 -1.1983 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723521266.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:32:01 Heat of formation + Delta-G solvation = -177.325750 kcal Electronic energy + Delta-G solvation = -30024.467076 eV Core-core repulsion = 25391.012823 eV Total energy + Delta-G solvation = -4633.454253 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.93935 -48.03034 -41.21002 -40.44998 -39.33582 -37.58276 -36.08783 -35.23685 -33.99673 -33.65148 -30.52990 -29.62241 -28.42336 -27.51212 -25.68137 -23.63512 -23.08303 -22.05562 -21.32926 -21.10665 -20.49141 -20.29423 -18.91583 -18.26104 -17.94865 -17.53651 -17.26503 -17.00300 -16.76129 -16.54468 -16.34812 -16.00727 -15.73584 -15.27566 -15.22033 -15.07114 -14.88707 -14.71735 -14.38174 -14.28233 -14.18673 -14.13737 -13.81776 -13.53481 -13.21071 -13.00240 -12.95148 -12.85933 -12.75783 -12.43871 -12.38752 -12.36773 -12.00677 -11.91756 -11.84737 -11.64834 -11.53401 -11.23105 -10.85002 -10.44040 -10.27203 -10.06271 -9.29058 -8.43292 -6.04064 1.29459 1.33166 1.42531 1.59843 1.91599 2.02732 2.20768 2.52895 2.78465 2.91667 3.01551 3.09168 3.13447 3.30485 3.41824 3.60914 3.76529 3.84678 3.95032 4.02549 4.07878 4.11877 4.21835 4.32571 4.40493 4.42582 4.49346 4.59447 4.69298 4.75084 4.78813 4.81759 4.87797 4.98376 5.01468 5.02453 5.13657 5.23733 5.44385 5.50353 5.86737 5.98753 6.30859 6.56326 6.58114 6.85244 7.23866 7.36803 7.91628 8.74011 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.014207 B = 0.002118 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.375267 B =13213.898466 C =14096.216815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.961 3.039 4 H -0.255 1.255 5 H -0.275 1.275 6 H -0.235 1.235 7 C -0.327 4.327 8 H 0.058 0.942 9 N -0.591 5.591 10 C 0.450 3.550 11 O -0.612 6.612 12 C 0.062 3.938 13 N -0.639 5.639 14 C 0.023 3.977 15 C 0.169 3.831 16 N -0.703 5.703 17 C 0.519 3.481 18 O -0.586 6.586 19 C -0.107 4.107 20 H 0.135 0.865 21 C -0.104 4.104 22 C -0.151 4.151 23 C 0.272 3.728 24 F -0.212 7.212 25 F -0.209 7.209 26 C -0.155 4.155 27 C -0.201 4.201 28 C -0.143 4.143 29 H 0.279 0.721 30 H 0.389 0.611 31 H 0.077 0.923 32 H 0.104 0.896 33 H 0.352 0.648 34 H 0.081 0.919 35 H 0.056 0.944 36 H 0.417 0.583 37 H 0.123 0.877 38 H 0.078 0.922 39 H 0.107 0.893 40 H 0.120 0.880 41 H 0.091 0.909 42 H 0.099 0.901 43 H 0.093 0.907 44 H 0.111 0.889 45 H 0.121 0.879 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.939 -11.751 4.454 29.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.212 4.212 3 Si 0.781 3.219 4 H -0.180 1.180 5 H -0.200 1.200 6 H -0.158 1.158 7 C -0.457 4.457 8 H 0.076 0.924 9 N -0.232 5.232 10 C 0.237 3.763 11 O -0.496 6.496 12 C -0.070 4.070 13 N -0.270 5.270 14 C -0.069 4.069 15 C 0.044 3.956 16 N -0.354 5.354 17 C 0.306 3.694 18 O -0.466 6.466 19 C -0.128 4.128 20 H 0.153 0.847 21 C -0.141 4.141 22 C -0.189 4.189 23 C 0.236 3.764 24 F -0.193 7.193 25 F -0.190 7.190 26 C -0.193 4.193 27 C -0.241 4.241 28 C -0.181 4.181 29 H 0.089 0.911 30 H 0.224 0.776 31 H 0.095 0.905 32 H 0.122 0.878 33 H 0.172 0.828 34 H 0.099 0.901 35 H 0.074 0.926 36 H 0.254 0.746 37 H 0.141 0.859 38 H 0.097 0.903 39 H 0.126 0.874 40 H 0.139 0.861 41 H 0.110 0.890 42 H 0.118 0.882 43 H 0.112 0.888 44 H 0.129 0.871 45 H 0.139 0.861 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 26.712 -11.630 5.246 29.602 hybrid contribution -0.395 1.215 -0.668 1.442 sum 26.317 -10.415 4.577 28.671 Atomic orbital electron populations 1.69799 1.08042 1.29236 1.50171 1.26080 0.96453 1.02598 0.96110 0.85412 0.79435 0.77017 0.79988 1.17984 1.20049 1.15809 1.19005 0.81383 0.94966 1.50315 0.92365 1.42054 1.05919 1.07640 1.67597 1.20870 0.90782 0.83360 0.81240 1.90541 1.71298 1.32562 1.55235 1.21591 0.89457 0.92310 1.03602 1.59897 1.02859 1.10170 1.54110 1.21788 0.86659 1.05729 0.92734 1.20646 0.98803 0.90605 0.85525 1.45799 1.51104 1.19609 1.18892 1.20741 0.77537 0.88009 0.83131 1.90699 1.49202 1.27041 1.79670 1.22113 1.02631 0.95101 0.92939 0.84738 1.22535 1.00347 0.94693 0.96572 1.23407 1.04900 0.94958 0.95649 1.22178 0.77235 0.98588 0.78442 1.92996 1.35954 1.95036 1.95305 1.93000 1.93433 1.95226 1.37368 1.23047 0.99474 0.96966 0.99820 1.23699 1.03903 1.01204 0.95269 1.23248 1.02864 0.90955 1.01030 0.91120 0.77582 0.90479 0.87814 0.82791 0.90071 0.92597 0.74600 0.85916 0.90307 0.87430 0.86139 0.89037 0.88228 0.88831 0.87052 0.86081 0.87862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.75 13.96 21.66 0.30 -55.45 16 2 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 3 Si 0.96 38.72 27.74 68.60 1.90 40.62 16 4 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 5 H -0.28 -11.07 7.11 99.48 0.71 -10.36 16 6 H -0.23 -8.08 6.52 99.48 0.65 -7.44 16 7 C -0.33 -18.94 10.16 84.04 0.85 -18.08 16 8 H 0.06 4.00 7.39 -2.91 -0.02 3.98 16 9 N -0.59 -27.44 5.09 -306.98 -1.56 -29.00 16 10 C 0.45 19.59 7.81 87.66 0.68 20.27 16 11 O -0.61 -32.45 15.67 -3.05 -0.05 -32.50 16 12 C 0.06 1.82 5.94 85.56 0.51 2.33 16 13 N -0.64 -16.27 6.38 -474.13 -3.03 -19.30 16 14 C 0.02 0.40 1.82 3.53 0.01 0.41 16 15 C 0.17 3.07 5.72 86.38 0.49 3.56 16 16 N -0.70 -10.97 5.45 -463.07 -2.53 -13.50 16 17 C 0.52 9.70 7.13 87.66 0.62 10.32 16 18 O -0.59 -16.24 15.42 -3.03 -0.05 -16.29 16 19 C -0.11 -1.28 3.25 -10.46 -0.03 -1.32 16 20 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 21 C -0.10 -0.68 6.31 31.89 0.20 -0.48 16 22 C -0.15 -1.17 6.40 31.67 0.20 -0.97 16 23 C 0.27 4.18 2.57 31.32 0.08 4.26 16 24 F -0.21 -4.23 17.04 44.97 0.77 -3.46 16 25 F -0.21 -3.87 17.04 44.97 0.77 -3.10 16 26 C -0.15 -2.50 5.88 31.32 0.18 -2.31 16 27 C -0.20 -2.83 10.03 30.62 0.31 -2.52 16 28 C -0.14 -1.73 9.86 30.62 0.30 -1.43 16 29 H 0.28 15.28 8.31 -92.70 -0.77 14.51 16 30 H 0.39 15.12 5.76 -92.71 -0.53 14.58 16 31 H 0.08 1.87 8.09 -2.38 -0.02 1.85 16 32 H 0.10 2.78 6.80 -2.39 -0.02 2.77 16 33 H 0.35 9.72 8.12 -89.69 -0.73 8.99 16 34 H 0.08 1.41 7.91 -2.39 -0.02 1.39 16 35 H 0.06 1.26 6.58 -2.39 -0.02 1.24 16 36 H 0.42 4.82 8.42 -92.71 -0.78 4.04 16 37 H 0.12 0.14 8.14 -2.39 -0.02 0.12 16 38 H 0.08 0.63 8.05 -2.39 -0.02 0.61 16 39 H 0.11 0.66 8.11 -2.38 -0.02 0.64 16 40 H 0.12 0.56 8.12 -2.39 -0.02 0.54 16 41 H 0.09 1.93 6.72 -2.39 -0.02 1.91 16 42 H 0.10 1.56 8.02 -2.39 -0.02 1.54 16 43 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.11 1.31 8.06 -2.39 -0.02 1.29 16 45 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.10 1.27 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -80.57 388.06 0.36 -80.21 By element: Atomic # 1 Polarization: 39.07 SS G_CDS: -1.05 Total: 38.01 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: 4.88 Total: 13.76 kcal Atomic # 7 Polarization: -110.44 SS G_CDS: -6.81 Total: -117.25 kcal Atomic # 8 Polarization: -48.69 SS G_CDS: -0.09 Total: -48.79 kcal Atomic # 9 Polarization: -8.09 SS G_CDS: 1.53 Total: -6.56 kcal Atomic # 14 Polarization: 38.72 SS G_CDS: 1.90 Total: 40.62 kcal Total: -80.57 0.36 -80.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723521266.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.118 kcal (2) G-P(sol) polarization free energy of solvation -80.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds