Wall clock time and date at job start Sat Apr 11 2020 07:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46500 * 119.99697 * 2 1 4 4 C 1.52997 * 109.47141 * 269.99934 * 3 2 1 5 5 H 1.09000 * 109.47482 * 60.00471 * 4 3 2 6 6 O 1.42896 * 109.47456 * 300.00269 * 4 3 2 7 7 C 1.53008 * 109.47188 * 180.02562 * 4 3 2 8 8 N 1.46500 * 109.47216 * 185.00275 * 7 4 3 9 9 C 1.36928 * 120.00021 * 179.72453 * 8 7 4 10 10 H 1.08008 * 120.00307 * 0.27550 * 9 8 7 11 11 C 1.38817 * 120.00294 * 180.27295 * 9 8 7 12 12 N 1.31616 * 119.99472 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00137 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47234 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.47088 * 120.00001 * 13 11 9 16 16 H 1.48500 * 109.47285 * 240.00239 * 13 11 9 17 17 C 1.34772 * 119.99828 * 180.02562 * 2 1 3 18 18 O 1.21560 * 119.99738 * 176.16914 * 17 2 1 19 19 C 1.47829 * 120.00392 * 356.16918 * 17 2 1 20 20 N 1.34572 * 126.02142 * 6.00971 * 19 17 2 21 21 C 1.30866 * 107.29218 * 179.97438 * 20 19 17 22 22 N 1.34886 * 107.59048 * 0.02562 * 21 20 19 23 23 C 1.40145 * 125.77531 * 179.97438 * 22 21 20 24 24 C 1.38850 * 120.06532 * 359.71847 * 23 22 21 25 25 C 1.38114 * 119.93061 * 179.76726 * 24 23 22 26 26 C 1.38284 * 120.06773 * 0.51254 * 25 24 23 27 27 C 1.38280 * 120.13672 * 359.74428 * 26 25 24 28 28 C 1.38124 * 120.06677 * 0.02562 * 27 26 25 29 29 N 1.28859 * 108.45702 * 359.72711 * 22 21 20 30 30 H 1.09000 * 109.47103 * 95.67279 * 1 2 3 31 31 H 1.08997 * 109.46930 * 215.67538 * 1 2 3 32 32 H 1.09003 * 109.46814 * 335.67216 * 1 2 3 33 33 H 1.09007 * 109.46885 * 150.00420 * 3 2 1 34 34 H 1.08998 * 109.47335 * 30.00268 * 3 2 1 35 35 H 0.96697 * 114.00330 * 299.99971 * 6 4 3 36 36 H 1.08998 * 109.46877 * 64.99911 * 7 4 3 37 37 H 1.09001 * 109.46979 * 305.00208 * 7 4 3 38 38 H 0.96997 * 120.00051 * 359.97438 * 8 7 4 39 39 H 0.97003 * 119.99838 * 179.97438 * 12 11 9 40 40 H 1.08002 * 126.20804 * 179.97438 * 21 20 19 41 41 H 1.07998 * 120.03579 * 0.02562 * 24 23 22 42 42 H 1.08003 * 119.96414 * 180.25473 * 25 24 23 43 43 H 1.07998 * 119.93072 * 179.76041 * 26 25 24 44 44 H 1.07996 * 119.96897 * 180.02562 * 27 26 25 45 45 H 1.07993 * 120.02978 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4425 5 1 1.5001 1.8408 -1.9563 6 8 3.2247 0.7146 -2.1162 7 6 3.2180 3.0352 -1.4425 8 7 3.3579 3.5184 -2.8184 9 6 4.0076 4.6978 -3.0672 10 1 4.4208 5.2697 -2.2494 11 6 4.1352 5.1585 -4.3704 12 7 3.6321 4.4614 -5.3670 13 14 5.0209 6.7678 -4.7097 14 1 5.4908 7.3539 -3.4286 15 1 6.1863 6.5145 -5.5945 16 1 4.0903 7.7143 -5.3755 17 6 2.1389 -1.1672 -0.0005 18 8 3.3524 -1.1683 -0.0709 19 6 1.4023 -2.4461 0.0844 20 7 0.0649 -2.5927 0.0526 21 6 -0.1886 -3.8726 0.1531 22 7 0.9932 -4.5160 0.2476 23 6 1.1641 -5.9015 0.3718 24 6 0.0567 -6.7381 0.4124 25 6 0.2285 -8.1035 0.5301 26 6 1.5014 -8.6366 0.6181 27 6 2.6061 -7.8055 0.5833 28 6 2.4409 -6.4396 0.4610 29 7 1.9387 -3.6419 0.1990 30 1 -0.3633 -0.1016 -1.0226 31 1 -0.3633 -0.8348 0.5993 32 1 -0.3633 0.9364 0.4234 33 1 3.1500 1.1384 0.5138 34 1 1.6084 2.0284 0.5139 35 1 4.0872 0.5461 -1.7127 36 1 4.2062 2.8838 -1.0083 37 1 2.6710 3.7710 -0.8529 38 1 2.9871 3.0047 -3.5529 39 1 3.7209 4.7835 -6.2777 40 1 -1.1666 -4.3307 0.1601 41 1 -0.9378 -6.3220 0.3479 42 1 -0.6324 -8.7551 0.5576 43 1 1.6331 -9.7042 0.7140 44 1 3.5990 -8.2248 0.6519 45 1 3.3041 -5.7912 0.4335 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725700810.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:32:18 Heat of formation + Delta-G solvation = 77.022339 kcal Electronic energy + Delta-G solvation = -28972.611103 eV Core-core repulsion = 24800.875397 eV Total energy + Delta-G solvation = -4171.735706 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.02754 -40.01343 -39.53976 -37.15472 -35.45223 -34.80440 -33.89664 -32.56331 -31.50120 -31.25250 -30.30599 -29.21520 -26.80650 -26.15816 -24.52666 -24.33122 -22.85625 -22.19014 -21.74775 -21.04274 -19.90730 -18.87567 -17.23760 -17.13219 -17.03960 -16.82096 -16.61315 -16.01131 -15.47611 -15.44156 -15.02105 -14.84178 -14.57248 -14.32698 -14.10882 -13.80046 -13.56270 -13.39507 -13.16265 -12.87841 -12.81919 -12.40170 -12.32347 -12.15229 -12.00604 -11.66339 -11.44733 -11.34798 -10.87574 -10.77838 -10.58732 -10.54672 -10.30868 -10.12231 -10.06318 -9.70448 -9.70062 -9.52674 -9.03928 -8.83118 -8.41610 -6.84220 -5.68064 -2.97077 0.11249 0.64788 1.42392 1.68894 1.82297 2.79276 3.09608 3.27142 3.48383 3.53277 3.56092 3.69246 3.86928 4.11375 4.27860 4.35103 4.49360 4.63991 4.67229 4.77937 4.93941 4.95694 5.12803 5.26689 5.28628 5.33962 5.48585 5.55113 5.61405 5.64424 5.70441 5.75851 5.81318 5.83500 5.88428 5.95957 6.10101 6.17305 6.31874 6.35987 6.54618 6.61779 6.83921 7.25603 7.61716 7.75911 8.12201 8.32884 8.50371 9.61431 10.20452 10.56093 11.54535 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.025249 B = 0.001813 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.682524 B =15444.088270 C =15875.856677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.588 5.588 3 C 0.087 3.913 4 C 0.085 3.915 5 H 0.097 0.903 6 O -0.548 6.548 7 C 0.126 3.874 8 N -0.725 5.725 9 C -0.240 4.240 10 H 0.070 0.930 11 C -0.015 4.015 12 N -0.930 5.930 13 Si 0.907 3.093 14 H -0.281 1.281 15 H -0.292 1.292 16 H -0.292 1.292 17 C 0.616 3.384 18 O -0.510 6.510 19 C 0.164 3.836 20 N -0.471 5.471 21 C 0.193 3.807 22 N -0.252 5.252 23 C 0.128 3.872 24 C -0.122 4.122 25 C -0.098 4.098 26 C -0.114 4.114 27 C -0.098 4.098 28 C -0.101 4.101 29 N -0.251 5.251 30 H 0.058 0.942 31 H 0.101 0.899 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.374 0.626 36 H 0.022 0.978 37 H 0.025 0.975 38 H 0.388 0.612 39 H 0.254 0.746 40 H 0.228 0.772 41 H 0.136 0.864 42 H 0.137 0.863 43 H 0.132 0.868 44 H 0.137 0.863 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.470 -28.874 17.728 36.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.320 5.320 3 C -0.036 4.036 4 C 0.025 3.975 5 H 0.115 0.885 6 O -0.353 6.353 7 C -0.003 4.003 8 N -0.370 5.370 9 C -0.371 4.371 10 H 0.088 0.912 11 C -0.211 4.211 12 N -0.579 5.579 13 Si 0.739 3.261 14 H -0.206 1.206 15 H -0.219 1.219 16 H -0.219 1.219 17 C 0.399 3.601 18 O -0.382 6.382 19 C -0.115 4.115 20 N -0.196 5.196 21 C -0.101 4.101 22 N -0.041 5.041 23 C 0.038 3.962 24 C -0.142 4.142 25 C -0.116 4.116 26 C -0.133 4.133 27 C -0.117 4.117 28 C -0.121 4.121 29 N -0.087 5.087 30 H 0.077 0.923 31 H 0.119 0.881 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.109 0.891 35 H 0.222 0.778 36 H 0.039 0.961 37 H 0.043 0.957 38 H 0.223 0.777 39 H 0.064 0.936 40 H 0.244 0.756 41 H 0.154 0.846 42 H 0.155 0.845 43 H 0.150 0.850 44 H 0.155 0.845 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -11.779 -28.448 17.321 35.328 hybrid contribution 0.386 0.613 -0.224 0.758 sum -11.393 -27.835 17.098 34.596 Atomic orbital electron populations 1.22291 0.78087 1.03656 1.03254 1.47366 1.07788 1.04853 1.72026 1.22386 0.98222 0.83882 0.99084 1.22505 0.95856 0.88319 0.90862 0.88515 1.86553 1.33126 1.58873 1.56713 1.21246 0.96803 0.92490 0.89718 1.42255 1.68192 1.25074 1.01473 1.19281 1.28054 0.97579 0.92224 0.91190 1.24767 1.01633 0.99043 0.95646 1.69699 1.50492 1.39086 0.98589 0.86108 0.78990 0.83317 0.77719 1.20583 1.21895 1.21909 1.16141 0.85657 0.80707 0.77564 1.90797 1.12558 1.86003 1.48890 1.23917 0.88003 0.93563 1.06050 1.71555 1.13597 1.14594 1.19891 1.26737 0.93531 0.88467 1.01316 1.44589 1.05033 1.06094 1.48376 1.17678 0.95915 0.77573 1.05082 1.20863 0.97135 0.93698 1.02536 1.21034 0.98046 0.93733 0.98813 1.21387 0.92428 1.00616 0.98856 1.21182 0.99874 0.92279 0.98348 1.21134 0.95838 0.96177 0.98944 1.74398 1.16585 0.98501 1.19255 0.92319 0.88083 0.91436 0.89357 0.89080 0.77801 0.96052 0.95727 0.77744 0.93604 0.75579 0.84634 0.84467 0.84966 0.84524 0.83812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.78 9.68 59.85 0.58 1.36 16 2 N -0.59 -8.30 2.83 -182.70 -0.52 -8.82 16 3 C 0.09 1.23 5.18 -4.04 -0.02 1.21 16 4 C 0.09 1.53 3.27 -26.73 -0.09 1.44 16 5 H 0.10 1.80 8.14 -51.93 -0.42 1.38 16 6 O -0.55 -11.17 12.01 -48.01 -0.58 -11.75 16 7 C 0.13 2.63 5.90 -4.04 -0.02 2.61 16 8 N -0.73 -19.52 5.55 -59.90 -0.33 -19.85 16 9 C -0.24 -7.03 9.99 -15.06 -0.15 -7.18 16 10 H 0.07 1.97 7.83 -52.48 -0.41 1.56 16 11 C -0.01 -0.45 5.50 -17.43 -0.10 -0.54 16 12 N -0.93 -29.52 13.06 55.49 0.72 -28.79 16 13 Si 0.91 23.18 29.55 -169.99 -5.02 18.16 16 14 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 15 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 16 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 17 C 0.62 10.04 7.25 -12.34 -0.09 9.95 16 18 O -0.51 -9.66 15.24 -7.47 -0.11 -9.77 16 19 C 0.16 2.39 7.65 -156.30 -1.20 1.19 16 20 N -0.47 -5.45 7.86 -12.29 -0.10 -5.55 16 21 C 0.19 1.63 11.93 -90.21 -1.08 0.55 16 22 N -0.25 -2.61 3.52 -11.77 -0.04 -2.65 16 23 C 0.13 1.03 6.67 -83.60 -0.56 0.47 16 24 C -0.12 -0.58 9.45 -39.40 -0.37 -0.95 16 25 C -0.10 -0.35 10.04 -39.61 -0.40 -0.75 16 26 C -0.11 -0.45 10.04 -39.55 -0.40 -0.84 16 27 C -0.10 -0.52 10.04 -39.61 -0.40 -0.92 16 28 C -0.10 -0.80 9.61 -39.40 -0.38 -1.18 16 29 N -0.25 -3.54 11.33 32.08 0.36 -3.18 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.10 1.08 5.25 -51.93 -0.27 0.80 16 32 H 0.07 0.61 7.83 -51.93 -0.41 0.21 16 33 H 0.09 1.27 7.48 -51.93 -0.39 0.89 16 34 H 0.09 1.04 7.86 -51.93 -0.41 0.64 16 35 H 0.37 7.18 8.34 45.56 0.38 7.56 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.39 11.29 7.67 -40.82 -0.31 10.97 16 39 H 0.25 7.74 8.31 -40.82 -0.34 7.40 16 40 H 0.23 0.66 7.01 -52.49 -0.37 0.30 16 41 H 0.14 0.27 6.71 -52.49 -0.35 -0.09 16 42 H 0.14 0.15 8.06 -52.48 -0.42 -0.28 16 43 H 0.13 0.22 8.06 -52.49 -0.42 -0.21 16 44 H 0.14 0.46 8.06 -52.49 -0.42 0.04 16 45 H 0.14 1.32 7.68 -52.49 -0.40 0.91 16 LS Contribution 383.15 15.07 5.77 5.77 Total: -1.00 -38.63 383.15 -9.54 -48.17 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -5.04 Total: 11.84 kcal Atomic # 6 Polarization: 11.08 SS G_CDS: -4.66 Total: 6.42 kcal Atomic # 7 Polarization: -68.94 SS G_CDS: 0.10 Total: -68.84 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: -0.69 Total: -21.52 kcal Atomic # 14 Polarization: 23.18 SS G_CDS: -5.02 Total: 18.16 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -38.63 -9.54 -48.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725700810.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.189 kcal (2) G-P(sol) polarization free energy of solvation -38.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds