Wall clock time and date at job start Sat Apr 11 2020 07:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46500 * 119.99697 * 2 1 4 4 C 1.52997 * 109.47141 * 269.99934 * 3 2 1 5 5 H 1.09000 * 109.47482 * 60.00471 * 4 3 2 6 6 O 1.42896 * 109.47456 * 300.00269 * 4 3 2 7 7 C 1.53008 * 109.47188 * 180.02562 * 4 3 2 8 8 N 1.46500 * 109.47216 * 185.00275 * 7 4 3 9 9 C 1.36928 * 120.00021 * 179.72453 * 8 7 4 10 10 H 1.08008 * 120.00307 * 0.27550 * 9 8 7 11 11 C 1.38817 * 120.00294 * 180.27295 * 9 8 7 12 12 N 1.31616 * 119.99472 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00137 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47234 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.47088 * 120.00001 * 13 11 9 16 16 H 1.48500 * 109.47285 * 240.00239 * 13 11 9 17 17 C 1.34772 * 119.99828 * 180.02562 * 2 1 3 18 18 O 1.21560 * 119.99738 * 176.16914 * 17 2 1 19 19 C 1.47829 * 120.00392 * 356.16918 * 17 2 1 20 20 N 1.34572 * 126.02142 * 6.00971 * 19 17 2 21 21 C 1.30866 * 107.29218 * 179.97438 * 20 19 17 22 22 N 1.34886 * 107.59048 * 0.02562 * 21 20 19 23 23 C 1.40145 * 125.77531 * 179.97438 * 22 21 20 24 24 C 1.38850 * 120.06532 * 359.71847 * 23 22 21 25 25 C 1.38114 * 119.93061 * 179.76726 * 24 23 22 26 26 C 1.38284 * 120.06773 * 0.51254 * 25 24 23 27 27 C 1.38280 * 120.13672 * 359.74428 * 26 25 24 28 28 C 1.38124 * 120.06677 * 0.02562 * 27 26 25 29 29 N 1.28859 * 108.45702 * 359.72711 * 22 21 20 30 30 H 1.09000 * 109.47103 * 95.67279 * 1 2 3 31 31 H 1.08997 * 109.46930 * 215.67538 * 1 2 3 32 32 H 1.09003 * 109.46814 * 335.67216 * 1 2 3 33 33 H 1.09007 * 109.46885 * 150.00420 * 3 2 1 34 34 H 1.08998 * 109.47335 * 30.00268 * 3 2 1 35 35 H 0.96697 * 114.00330 * 299.99971 * 6 4 3 36 36 H 1.08998 * 109.46877 * 64.99911 * 7 4 3 37 37 H 1.09001 * 109.46979 * 305.00208 * 7 4 3 38 38 H 0.96997 * 120.00051 * 359.97438 * 8 7 4 39 39 H 0.97003 * 119.99838 * 179.97438 * 12 11 9 40 40 H 1.08002 * 126.20804 * 179.97438 * 21 20 19 41 41 H 1.07998 * 120.03579 * 0.02562 * 24 23 22 42 42 H 1.08003 * 119.96414 * 180.25473 * 25 24 23 43 43 H 1.07998 * 119.93072 * 179.76041 * 26 25 24 44 44 H 1.07996 * 119.96897 * 180.02562 * 27 26 25 45 45 H 1.07993 * 120.02978 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4425 5 1 1.5001 1.8408 -1.9563 6 8 3.2247 0.7146 -2.1162 7 6 3.2180 3.0352 -1.4425 8 7 3.3579 3.5184 -2.8184 9 6 4.0076 4.6978 -3.0672 10 1 4.4208 5.2697 -2.2494 11 6 4.1352 5.1585 -4.3704 12 7 3.6321 4.4614 -5.3670 13 14 5.0209 6.7678 -4.7097 14 1 5.4908 7.3539 -3.4286 15 1 6.1863 6.5145 -5.5945 16 1 4.0903 7.7143 -5.3755 17 6 2.1389 -1.1672 -0.0005 18 8 3.3524 -1.1683 -0.0709 19 6 1.4023 -2.4461 0.0844 20 7 0.0649 -2.5927 0.0526 21 6 -0.1886 -3.8726 0.1531 22 7 0.9932 -4.5160 0.2476 23 6 1.1641 -5.9015 0.3718 24 6 0.0567 -6.7381 0.4124 25 6 0.2285 -8.1035 0.5301 26 6 1.5014 -8.6366 0.6181 27 6 2.6061 -7.8055 0.5833 28 6 2.4409 -6.4396 0.4610 29 7 1.9387 -3.6419 0.1990 30 1 -0.3633 -0.1016 -1.0226 31 1 -0.3633 -0.8348 0.5993 32 1 -0.3633 0.9364 0.4234 33 1 3.1500 1.1384 0.5138 34 1 1.6084 2.0284 0.5139 35 1 4.0872 0.5461 -1.7127 36 1 4.2062 2.8838 -1.0083 37 1 2.6710 3.7710 -0.8529 38 1 2.9871 3.0047 -3.5529 39 1 3.7209 4.7835 -6.2777 40 1 -1.1666 -4.3307 0.1601 41 1 -0.9378 -6.3220 0.3479 42 1 -0.6324 -8.7551 0.5576 43 1 1.6331 -9.7042 0.7140 44 1 3.5990 -8.2248 0.6519 45 1 3.3041 -5.7912 0.4335 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725700810.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:32:17 Heat of formation + Delta-G solvation = 50.178086 kcal Electronic energy + Delta-G solvation = -28973.775157 eV Core-core repulsion = 24800.875397 eV Total energy + Delta-G solvation = -4172.899760 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.83396 -41.02989 -40.15519 -38.67017 -36.61915 -35.94594 -35.53287 -33.29965 -33.21945 -31.94376 -31.36433 -30.36452 -27.98050 -27.49593 -25.72076 -25.05692 -24.29147 -23.00575 -22.61987 -22.35014 -20.87409 -19.56856 -19.23824 -18.19173 -18.01464 -17.92383 -17.24279 -17.16165 -16.62847 -16.48798 -16.27674 -15.88665 -15.85333 -15.29980 -15.17883 -15.00458 -14.58796 -14.45008 -14.27373 -14.01767 -13.98718 -13.77568 -13.69609 -13.02280 -12.93951 -12.80192 -12.68742 -12.59846 -12.16737 -12.10723 -12.08273 -12.02587 -11.82766 -11.54100 -11.25383 -11.17136 -11.07531 -10.98522 -10.07962 -9.67277 -9.53473 -9.02091 -7.95179 -5.25357 -0.45880 0.27756 0.53585 0.99177 1.14293 1.45870 1.48203 1.58240 1.79476 2.14625 2.55140 2.70809 2.88369 3.17771 3.36389 3.50253 3.58165 3.74871 3.85310 3.87459 4.03561 4.17224 4.19807 4.32444 4.35152 4.36848 4.48654 4.51394 4.54334 4.66965 4.69823 4.81239 4.92347 4.93712 4.97377 5.14951 5.23102 5.28714 5.33583 5.43248 5.46824 5.47803 5.61386 5.90342 6.15327 6.25438 6.72758 6.78864 7.00634 7.31469 8.07623 8.30724 9.28761 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.025249 B = 0.001813 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.682524 B =15444.088270 C =15875.856677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.584 5.584 3 C 0.096 3.904 4 C 0.094 3.906 5 H 0.090 0.910 6 O -0.569 6.569 7 C 0.125 3.875 8 N -0.742 5.742 9 C -0.246 4.246 10 H 0.080 0.920 11 C -0.081 4.081 12 N -0.972 5.972 13 Si 0.980 3.020 14 H -0.263 1.263 15 H -0.295 1.295 16 H -0.290 1.290 17 C 0.606 3.394 18 O -0.552 6.552 19 C 0.138 3.862 20 N -0.482 5.482 21 C 0.207 3.793 22 N -0.249 5.249 23 C 0.093 3.907 24 C -0.112 4.112 25 C -0.093 4.093 26 C -0.108 4.108 27 C -0.106 4.106 28 C -0.129 4.129 29 N -0.287 5.287 30 H 0.049 0.951 31 H 0.109 0.891 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.128 0.872 35 H 0.376 0.624 36 H 0.024 0.976 37 H 0.046 0.954 38 H 0.373 0.627 39 H 0.251 0.749 40 H 0.284 0.716 41 H 0.169 0.831 42 H 0.173 0.827 43 H 0.161 0.839 44 H 0.148 0.852 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.967 -30.325 19.386 38.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.315 5.315 3 C -0.027 4.027 4 C 0.033 3.967 5 H 0.108 0.892 6 O -0.375 6.375 7 C -0.002 4.002 8 N -0.384 5.384 9 C -0.378 4.378 10 H 0.098 0.902 11 C -0.273 4.273 12 N -0.623 5.623 13 Si 0.808 3.192 14 H -0.187 1.187 15 H -0.223 1.223 16 H -0.218 1.218 17 C 0.391 3.609 18 O -0.428 6.428 19 C -0.141 4.141 20 N -0.208 5.208 21 C -0.085 4.085 22 N -0.038 5.038 23 C 0.003 3.997 24 C -0.133 4.133 25 C -0.111 4.111 26 C -0.126 4.126 27 C -0.125 4.125 28 C -0.149 4.149 29 N -0.124 5.124 30 H 0.068 0.932 31 H 0.127 0.873 32 H 0.113 0.887 33 H 0.103 0.897 34 H 0.146 0.854 35 H 0.224 0.776 36 H 0.042 0.958 37 H 0.064 0.936 38 H 0.204 0.796 39 H 0.059 0.941 40 H 0.299 0.701 41 H 0.187 0.813 42 H 0.191 0.809 43 H 0.178 0.822 44 H 0.166 0.834 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -14.306 -29.908 19.042 38.233 hybrid contribution 1.099 0.827 -0.671 1.531 sum -13.207 -29.081 18.371 36.846 Atomic orbital electron populations 1.22450 0.76138 1.05514 1.03118 1.47467 1.08952 1.04160 1.70954 1.22277 0.99149 0.84866 0.96377 1.22460 0.94531 0.86551 0.93108 0.89237 1.86523 1.33565 1.59567 1.57846 1.21442 0.97567 0.94279 0.86945 1.42484 1.68009 1.24567 1.03387 1.19743 1.27247 0.98189 0.92616 0.90205 1.25686 1.03164 1.02893 0.95559 1.69875 1.52492 1.41142 0.98777 0.84983 0.77335 0.78937 0.77932 1.18678 1.22267 1.21751 1.16552 0.85493 0.81912 0.76962 1.90752 1.14293 1.86812 1.50915 1.23614 0.89251 0.93012 1.08247 1.71471 1.11945 1.16506 1.20871 1.27764 0.94695 0.87492 0.98560 1.44757 1.04913 1.06640 1.47452 1.18102 0.97087 0.76774 1.07691 1.21293 0.97415 0.93848 1.00697 1.21526 0.99032 0.93604 0.96980 1.21801 0.92093 1.01841 0.96861 1.21384 1.01416 0.91332 0.98360 1.21113 0.95450 0.97204 1.01103 1.74310 1.18754 0.99128 1.20257 0.93187 0.87301 0.88743 0.89730 0.85419 0.77578 0.95830 0.93583 0.79567 0.94062 0.70126 0.81321 0.80941 0.82161 0.83402 0.86751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.47 9.68 127.77 1.24 2.70 16 2 N -0.58 -16.46 2.83 -850.20 -2.40 -18.87 16 3 C 0.10 2.66 5.18 86.38 0.45 3.10 16 4 C 0.09 3.38 3.27 30.60 0.10 3.48 16 5 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 6 O -0.57 -24.20 12.01 -136.76 -1.64 -25.85 16 7 C 0.13 5.18 5.90 86.38 0.51 5.69 16 8 N -0.74 -40.44 5.55 -343.44 -1.91 -42.34 16 9 C -0.25 -14.44 9.99 84.04 0.84 -13.60 16 10 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 11 C -0.08 -4.90 5.50 84.86 0.47 -4.43 16 12 N -0.97 -63.04 13.06 21.65 0.28 -62.76 16 13 Si 0.98 47.99 29.55 68.60 2.03 50.02 16 14 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 15 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 16 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 17 C 0.61 20.66 7.25 86.78 0.63 21.29 16 18 O -0.55 -22.32 15.24 8.32 0.13 -22.19 16 19 C 0.14 4.15 7.65 137.09 1.05 5.20 16 20 N -0.48 -10.82 7.86 -192.79 -1.51 -12.34 16 21 C 0.21 3.10 11.93 180.21 2.15 5.25 16 22 N -0.25 -5.12 3.52 -191.15 -0.67 -5.80 16 23 C 0.09 1.44 6.67 38.10 0.25 1.69 16 24 C -0.11 -0.71 9.45 22.39 0.21 -0.50 16 25 C -0.09 -0.30 10.04 22.25 0.22 -0.08 16 26 C -0.11 -0.53 10.04 22.29 0.22 -0.31 16 27 C -0.11 -1.08 10.04 22.25 0.22 -0.86 16 28 C -0.13 -2.18 9.61 22.39 0.22 -1.97 16 29 N -0.29 -8.57 11.33 -52.43 -0.59 -9.16 16 30 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.11 2.18 5.25 -2.39 -0.01 2.17 16 32 H 0.09 1.47 7.83 -2.39 -0.02 1.45 16 33 H 0.08 2.44 7.48 -2.38 -0.02 2.42 16 34 H 0.13 2.59 7.86 -2.39 -0.02 2.57 16 35 H 0.38 15.30 8.34 -74.06 -0.62 14.68 16 36 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.37 22.32 7.67 -92.71 -0.71 21.61 16 39 H 0.25 15.63 8.31 -92.71 -0.77 14.86 16 40 H 0.28 0.37 7.01 -2.91 -0.02 0.35 16 41 H 0.17 -0.19 6.71 -2.91 -0.02 -0.21 16 42 H 0.17 -0.61 8.06 -2.91 -0.02 -0.64 16 43 H 0.16 -0.11 8.06 -2.91 -0.02 -0.14 16 44 H 0.15 1.00 8.06 -2.91 -0.02 0.97 16 45 H 0.11 2.51 7.68 -2.91 -0.02 2.48 16 Total: -1.00 -89.05 383.15 2.20 -86.85 By element: Atomic # 1 Polarization: 36.04 SS G_CDS: -0.28 Total: 35.76 kcal Atomic # 6 Polarization: 17.89 SS G_CDS: 8.78 Total: 26.67 kcal Atomic # 7 Polarization: -144.45 SS G_CDS: -6.81 Total: -151.26 kcal Atomic # 8 Polarization: -46.52 SS G_CDS: -1.52 Total: -48.04 kcal Atomic # 14 Polarization: 47.99 SS G_CDS: 2.03 Total: 50.02 kcal Total: -89.05 2.20 -86.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725700810.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.025 kcal (2) G-P(sol) polarization free energy of solvation -89.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds