Wall clock time and date at job start Sat Apr 11 2020 07:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46505 * 119.99572 * 2 1 4 4 C 1.52996 * 109.46947 * 269.99488 * 3 2 1 5 5 H 1.09002 * 109.47259 * 305.00145 * 4 3 2 6 6 O 1.42900 * 109.47159 * 65.00350 * 4 3 2 7 7 C 1.53002 * 109.47122 * 185.00115 * 4 3 2 8 8 N 1.46494 * 109.47430 * 180.02562 * 7 4 3 9 9 C 1.36942 * 120.00341 * 179.97438 * 8 7 4 10 10 H 1.08004 * 119.99508 * 0.02562 * 9 8 7 11 11 C 1.38812 * 120.00183 * 180.02562 * 9 8 7 12 12 N 1.31614 * 119.99766 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99950 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47087 * 59.99434 * 13 11 9 15 15 H 1.48498 * 109.46801 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.46822 * 299.99720 * 13 11 9 17 17 C 1.34774 * 120.00396 * 179.97438 * 2 1 3 18 18 O 1.21594 * 120.00275 * 183.48241 * 17 2 1 19 19 C 1.47514 * 119.99737 * 3.48773 * 17 2 1 20 20 C 1.36621 * 125.76575 * 173.13478 * 19 17 2 21 21 N 1.35077 * 106.79498 * 180.15684 * 20 19 17 22 22 C 1.40222 * 126.61743 * 179.84654 * 21 20 19 23 23 C 1.38828 * 120.06748 * 179.71326 * 22 21 20 24 24 C 1.38118 * 119.93209 * 179.97438 * 23 22 21 25 25 C 1.38280 * 120.06952 * 359.97438 * 24 23 22 26 26 C 1.38280 * 120.12691 * 0.02562 * 25 24 23 27 27 C 1.38117 * 120.06845 * 0.02562 * 26 25 24 28 28 N 1.40220 * 106.76957 * 359.58928 * 21 20 19 29 29 N 1.28749 * 108.39012 * 0.26282 * 28 21 20 30 30 H 1.08995 * 109.47486 * 263.95179 * 1 2 3 31 31 H 1.08998 * 109.47381 * 23.95684 * 1 2 3 32 32 H 1.09002 * 109.46548 * 143.95099 * 1 2 3 33 33 H 1.08993 * 109.47293 * 29.99927 * 3 2 1 34 34 H 1.09003 * 109.46920 * 150.00031 * 3 2 1 35 35 H 0.96699 * 113.99693 * 59.99542 * 6 4 3 36 36 H 1.09004 * 109.46902 * 300.00642 * 7 4 3 37 37 H 1.09003 * 109.47306 * 60.00132 * 7 4 3 38 38 H 0.96999 * 119.99791 * 0.02562 * 8 7 4 39 39 H 0.97006 * 119.99765 * 180.02562 * 12 11 9 40 40 H 1.08000 * 126.60499 * 0.02562 * 20 19 17 41 41 H 1.07994 * 120.03080 * 359.97438 * 23 22 21 42 42 H 1.08001 * 119.96740 * 179.97438 * 24 23 22 43 43 H 1.07991 * 119.93790 * 179.74549 * 25 24 23 44 44 H 1.08002 * 119.96638 * 180.02562 * 26 25 24 45 45 H 1.08006 * 120.03552 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4425 5 1 2.9643 0.9131 -1.9815 6 8 1.2061 1.9935 -2.0814 7 6 3.3238 2.9681 -1.4443 8 7 3.5675 3.3914 -2.8255 9 6 4.3275 4.5024 -3.0772 10 1 4.7475 5.0663 -2.2575 11 6 4.5580 4.9037 -4.3859 12 7 4.0465 4.2161 -5.3848 13 14 5.5953 6.4188 -4.7293 14 1 6.9565 6.2242 -4.1686 15 1 5.6902 6.6316 -6.1959 16 1 4.9641 7.6046 -4.0963 17 6 2.1390 -1.1671 0.0005 18 8 3.3532 -1.1680 0.0645 19 6 1.4035 -2.4435 -0.0766 20 6 1.9646 -3.6812 -0.2169 21 7 0.9476 -4.5696 -0.2482 22 6 1.0563 -5.9610 -0.3835 23 6 -0.0858 -6.7503 -0.3931 24 6 0.0246 -8.1205 -0.5270 25 6 1.2709 -8.7064 -0.6519 26 6 2.4102 -7.9228 -0.6426 27 6 2.3063 -6.5521 -0.5080 28 7 -0.2377 -3.8326 -0.1134 29 7 0.0683 -2.5858 -0.0149 30 1 -0.3634 -0.1083 1.0219 31 1 -0.3634 0.9391 -0.4173 32 1 -0.3632 -0.8309 -0.6048 33 1 1.6084 2.0284 0.5138 34 1 3.1499 1.1385 0.5138 35 1 0.6955 2.6949 -1.6543 36 1 2.8120 3.7654 -0.9053 37 1 4.2746 2.7523 -0.9570 38 1 3.1899 2.8850 -3.5617 39 1 4.2079 4.4963 -6.2994 40 1 3.0184 -3.9060 -0.2909 41 1 -1.0594 -6.2933 -0.2961 42 1 -0.8635 -8.7351 -0.5342 43 1 1.3549 -9.7783 -0.7523 44 1 3.3823 -8.3830 -0.7407 45 1 3.1965 -5.9405 -0.5012 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734519881.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:32:46 Heat of formation + Delta-G solvation = 49.038936 kcal Electronic energy + Delta-G solvation = -28842.930818 eV Core-core repulsion = 24669.981661 eV Total energy + Delta-G solvation = -4172.949157 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.64402 -40.95609 -40.16317 -38.80812 -36.55806 -35.90844 -35.57350 -33.25095 -32.66737 -31.91342 -31.26947 -30.45741 -27.90857 -27.24192 -25.57469 -25.14673 -24.28305 -23.03362 -22.65144 -22.45781 -20.90798 -19.45852 -19.23022 -18.00701 -17.82944 -17.50437 -17.09329 -17.03344 -16.62929 -16.45172 -16.35542 -16.10986 -15.78650 -15.34468 -15.09214 -14.98826 -14.61395 -14.51881 -14.32881 -14.11785 -13.90279 -13.67243 -13.60232 -13.46699 -12.97339 -12.76866 -12.70572 -12.61750 -12.37445 -12.22624 -12.15901 -12.07119 -11.94789 -11.80357 -11.41436 -11.03490 -10.95833 -10.73552 -10.10585 -9.64922 -9.55959 -9.00847 -7.93707 -5.23934 -0.68106 0.25486 0.41454 0.70293 0.80173 1.46781 1.51141 1.57194 1.80439 2.08445 2.56353 2.67740 2.94471 3.13334 3.37176 3.49037 3.54939 3.66850 3.77267 3.82894 3.98048 3.99873 4.14999 4.18368 4.25040 4.33970 4.39042 4.47756 4.49113 4.55393 4.58281 4.70511 4.81887 4.94381 4.94922 5.11207 5.21066 5.25266 5.26999 5.42248 5.44278 5.45898 5.48737 5.86819 6.18846 6.26575 6.63275 6.89930 6.96297 7.32908 8.09318 8.32346 9.29649 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.018815 B = 0.001882 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.802634 B =14876.487942 C =15586.901867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.589 5.589 3 C 0.096 3.904 4 C 0.103 3.897 5 H 0.065 0.935 6 O -0.563 6.563 7 C 0.124 3.876 8 N -0.741 5.741 9 C -0.248 4.248 10 H 0.079 0.921 11 C -0.080 4.080 12 N -0.971 5.971 13 Si 0.979 3.021 14 H -0.278 1.278 15 H -0.296 1.296 16 H -0.274 1.274 17 C 0.594 3.406 18 O -0.567 6.567 19 C -0.108 4.108 20 C 0.101 3.899 21 N -0.300 5.300 22 C 0.097 3.903 23 C -0.117 4.117 24 C -0.101 4.101 25 C -0.107 4.107 26 C -0.096 4.096 27 C -0.128 4.128 28 N -0.081 5.081 29 N -0.201 5.201 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.120 0.880 34 H 0.091 0.909 35 H 0.384 0.616 36 H 0.042 0.958 37 H 0.028 0.972 38 H 0.373 0.627 39 H 0.251 0.749 40 H 0.233 0.767 41 H 0.133 0.867 42 H 0.159 0.841 43 H 0.162 0.838 44 H 0.164 0.836 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.432 -28.576 15.962 34.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.319 5.319 3 C -0.027 4.027 4 C 0.042 3.958 5 H 0.084 0.916 6 O -0.370 6.370 7 C -0.003 4.003 8 N -0.384 5.384 9 C -0.380 4.380 10 H 0.097 0.903 11 C -0.272 4.272 12 N -0.622 5.622 13 Si 0.807 3.193 14 H -0.204 1.204 15 H -0.222 1.222 16 H -0.200 1.200 17 C 0.381 3.619 18 O -0.446 6.446 19 C -0.247 4.247 20 C -0.053 4.053 21 N -0.078 5.078 22 C 0.006 3.994 23 C -0.137 4.137 24 C -0.119 4.119 25 C -0.125 4.125 26 C -0.115 4.115 27 C -0.149 4.149 28 N -0.059 5.059 29 N -0.074 5.074 30 H 0.087 0.913 31 H 0.106 0.894 32 H 0.101 0.899 33 H 0.138 0.862 34 H 0.109 0.891 35 H 0.233 0.767 36 H 0.060 0.940 37 H 0.046 0.954 38 H 0.205 0.795 39 H 0.059 0.941 40 H 0.250 0.750 41 H 0.151 0.849 42 H 0.177 0.823 43 H 0.180 0.820 44 H 0.182 0.818 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -10.073 -28.904 15.755 34.426 hybrid contribution 1.224 1.283 -0.529 1.850 sum -8.848 -27.622 15.226 32.758 Atomic orbital electron populations 1.22251 0.76630 1.04584 1.02885 1.47589 1.08750 1.04771 1.70769 1.22187 0.99272 0.85142 0.96087 1.22227 0.84630 0.95647 0.93279 0.91642 1.86600 1.32163 1.59933 1.58286 1.21423 0.97196 0.94830 0.86843 1.42453 1.61560 1.31638 1.02770 1.19661 1.23123 1.03017 0.92201 0.90273 1.25674 1.03150 1.02852 0.95526 1.69860 1.51133 1.42855 0.98332 0.85131 0.78655 0.79256 0.76212 1.20361 1.22245 1.19984 1.17035 0.85824 0.82645 0.76410 1.90801 1.13762 1.87291 1.52736 1.21371 0.90169 0.95212 1.17926 1.23752 0.97485 0.87605 0.96485 1.47745 1.06166 1.07070 1.46830 1.18044 0.97143 0.76761 1.07413 1.21124 0.97211 0.94823 1.00577 1.21456 0.99906 0.92844 0.97677 1.21811 0.91733 1.02221 0.96717 1.21462 1.01089 0.91576 0.97358 1.21292 0.94890 0.97212 1.01484 1.81994 1.04441 0.96527 1.22934 1.74773 1.12660 1.09566 1.10411 0.91258 0.89392 0.89950 0.86177 0.89063 0.76683 0.94007 0.95433 0.79474 0.94062 0.75047 0.84865 0.82316 0.82023 0.81840 0.83425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.73 9.34 127.77 1.19 2.92 16 2 N -0.59 -15.80 2.84 -850.57 -2.41 -18.21 16 3 C 0.10 2.53 5.06 86.38 0.44 2.97 16 4 C 0.10 3.55 3.30 30.59 0.10 3.65 16 5 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 6 O -0.56 -19.22 12.02 -148.98 -1.79 -21.02 16 7 C 0.12 5.02 5.92 86.38 0.51 5.53 16 8 N -0.74 -39.66 5.49 -343.44 -1.89 -41.55 16 9 C -0.25 -14.35 9.99 84.03 0.84 -13.51 16 10 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 11 C -0.08 -4.77 5.50 84.86 0.47 -4.30 16 12 N -0.97 -62.19 13.06 21.65 0.28 -61.91 16 13 Si 0.98 47.34 29.55 68.60 2.03 49.36 16 14 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 15 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 16 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 17 C 0.59 17.92 7.67 86.69 0.66 18.59 16 18 O -0.57 -19.90 16.43 -4.01 -0.07 -19.97 16 19 C -0.11 -2.87 6.69 40.82 0.27 -2.60 16 20 C 0.10 2.14 10.61 83.82 0.89 3.03 16 21 N -0.30 -6.25 3.82 -186.89 -0.71 -6.97 16 22 C 0.10 1.54 6.70 38.08 0.25 1.79 16 23 C -0.12 -1.59 9.68 22.38 0.22 -1.37 16 24 C -0.10 -0.77 10.04 22.25 0.22 -0.54 16 25 C -0.11 -0.55 10.04 22.29 0.22 -0.32 16 26 C -0.10 -0.61 10.04 22.25 0.22 -0.38 16 27 C -0.13 -1.38 9.47 22.38 0.21 -1.16 16 28 N -0.08 -2.01 13.12 37.02 0.49 -1.53 16 29 N -0.20 -5.28 8.82 -49.98 -0.44 -5.72 16 30 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.09 1.68 7.24 -2.39 -0.02 1.67 16 32 H 0.08 2.05 5.33 -2.39 -0.01 2.04 16 33 H 0.12 2.31 8.07 -2.39 -0.02 2.29 16 34 H 0.09 2.55 7.37 -2.39 -0.02 2.53 16 35 H 0.38 9.94 9.04 -74.06 -0.67 9.27 16 36 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 37 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.37 21.98 7.54 -92.71 -0.70 21.28 16 39 H 0.25 15.52 8.31 -92.70 -0.77 14.75 16 40 H 0.23 3.37 7.13 -2.91 -0.02 3.35 16 41 H 0.13 1.93 7.73 -2.91 -0.02 1.91 16 42 H 0.16 0.42 8.06 -2.91 -0.02 0.40 16 43 H 0.16 -0.11 8.06 -2.92 -0.02 -0.13 16 44 H 0.16 0.15 8.06 -2.91 -0.02 0.13 16 45 H 0.15 1.12 6.81 -2.91 -0.02 1.10 16 Total: -1.00 -81.38 385.67 1.90 -79.48 By element: Atomic # 1 Polarization: 34.04 SS G_CDS: -0.32 Total: 33.72 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: 6.73 Total: 14.29 kcal Atomic # 7 Polarization: -131.19 SS G_CDS: -4.69 Total: -135.88 kcal Atomic # 8 Polarization: -39.13 SS G_CDS: -1.86 Total: -40.98 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 2.03 Total: 49.36 kcal Total: -81.38 1.90 -79.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734519881.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.523 kcal (2) G-P(sol) polarization free energy of solvation -81.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds