Wall clock time and date at job start Sat Apr 11 2020 07:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39675 * 126.07102 * 2 1 4 4 C 1.38397 * 105.35758 * 180.25637 * 3 2 1 5 5 C 1.47165 * 126.88051 * 179.73732 * 4 3 2 6 6 O 1.21636 * 119.99641 * 186.65264 * 5 4 3 7 7 N 1.34770 * 120.00346 * 6.65053 * 5 4 3 8 8 C 1.47425 * 125.64564 * 5.55117 * 7 5 4 9 9 C 1.55134 * 104.72344 * 155.81334 * 8 7 5 10 10 H 1.08997 * 110.93693 * 155.28362 * 9 8 7 11 11 N 1.46496 * 111.19489 * 279.19098 * 9 8 7 12 12 C 1.36936 * 120.00143 * 267.18451 * 11 9 8 13 13 H 1.07999 * 119.99844 * 0.02562 * 12 11 9 14 14 C 1.38814 * 119.99885 * 179.97438 * 12 11 9 15 15 N 1.31610 * 120.00091 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99641 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47092 * 90.00476 * 16 14 12 18 18 H 1.48504 * 109.46704 * 210.00049 * 16 14 12 19 19 H 1.48495 * 109.47093 * 330.00258 * 16 14 12 20 20 C 1.55162 * 101.48436 * 37.29523 * 9 8 7 21 21 H 1.09007 * 110.87151 * 82.76563 * 20 9 8 22 22 N 1.46499 * 110.71958 * 205.96664 * 20 9 8 23 23 C 1.35309 * 125.86476 * 79.69363 * 22 20 9 24 24 C 1.35355 * 106.17548 * 179.90189 * 23 22 20 25 25 N 1.33772 * 106.49288 * 0.35438 * 24 23 22 26 26 N 1.28634 * 108.88721 * 359.77094 * 25 24 23 27 27 C 1.47023 * 125.65062 * 185.85568 * 7 5 4 28 28 N 1.36602 * 106.23650 * 359.58796 * 4 3 2 29 29 C 1.46492 * 125.19264 * 180.15555 * 28 4 3 30 30 N 1.28447 * 109.61358 * 0.42970 * 28 4 3 31 31 H 1.09004 * 109.46534 * 90.00240 * 1 2 3 32 32 H 1.08999 * 109.47752 * 210.00266 * 1 2 3 33 33 H 1.08999 * 109.47337 * 330.00745 * 1 2 3 34 34 H 1.07995 * 127.31631 * 359.97438 * 3 2 1 35 35 H 1.08999 * 110.37000 * 274.74159 * 8 7 5 36 36 H 1.09001 * 110.36823 * 37.06967 * 8 7 5 37 37 H 0.97004 * 119.99983 * 87.18488 * 11 9 8 38 38 H 0.97003 * 120.00483 * 179.97438 * 15 14 12 39 39 H 1.08004 * 126.91282 * 0.02562 * 23 22 20 40 40 H 1.07993 * 126.75541 * 180.12330 * 24 23 22 41 41 H 1.09006 * 109.88398 * 300.44000 * 27 7 5 42 42 H 1.08999 * 109.88299 * 61.45630 * 27 7 5 43 43 H 1.09008 * 109.47396 * 265.49709 * 29 28 4 44 44 H 1.09001 * 109.47447 * 25.49798 * 29 28 4 45 45 H 1.08999 * 109.47261 * 145.49658 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3294 1.1290 0.0000 4 6 3.6239 0.6395 -0.0060 5 6 4.8663 1.4282 -0.0138 6 8 5.9399 0.8705 -0.1405 7 7 4.8147 2.7683 0.1194 8 6 3.6008 3.5582 0.3948 9 6 4.1203 4.8621 1.0555 10 1 3.4134 5.6794 0.9129 11 7 4.4034 4.6586 2.4783 12 6 3.4400 4.9277 3.4135 13 1 2.4713 5.2897 3.1021 14 6 3.7082 4.7343 4.7617 15 7 4.8885 4.2927 5.1412 16 14 2.3936 5.1009 6.0373 17 1 1.5835 3.8799 6.2782 18 1 3.0393 5.5246 7.3057 19 1 1.5132 6.1894 5.5422 20 6 5.4279 5.1125 0.2585 21 1 5.2173 5.6167 -0.6847 22 7 6.3811 5.8873 1.0568 23 6 7.1832 5.3969 2.0299 24 6 7.8949 6.4489 2.4977 25 7 7.4929 7.5187 1.8025 26 7 6.5955 7.1525 0.9567 27 6 5.9586 3.6852 0.0080 28 7 3.5173 -0.7224 0.0003 29 6 4.6449 -1.6575 0.0004 30 7 2.2774 -1.0578 0.0002 31 1 -0.3632 0.0000 -1.0277 32 1 -0.3634 -0.8899 0.5138 33 1 -0.3634 0.8900 0.5137 34 1 2.0206 2.1638 -0.0004 35 1 3.0761 3.7836 -0.5336 36 1 2.9460 3.0208 1.0808 37 1 5.2734 4.3331 2.7581 38 1 5.0760 4.1579 6.0833 39 1 7.2447 4.3719 2.3645 40 1 8.6381 6.4292 3.2810 41 1 6.7104 3.4327 0.7558 42 1 6.3916 3.6181 -0.9901 43 1 4.8696 -1.9560 -1.0237 44 1 5.5183 -1.1736 0.4377 45 1 4.3860 -2.5388 0.5872 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070152176.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:30:11 Heat of formation + Delta-G solvation = 163.782092 kcal Electronic energy + Delta-G solvation = -31281.548733 eV Core-core repulsion = 27145.867964 eV Total energy + Delta-G solvation = -4135.680769 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.16311 -43.58897 -41.08926 -39.07496 -35.90688 -35.31955 -34.82741 -33.01130 -32.42908 -31.91570 -30.57627 -30.37995 -29.27602 -26.68412 -26.01342 -25.71328 -23.75787 -23.55546 -22.59215 -22.16292 -21.32845 -20.06986 -19.39089 -18.81132 -18.07807 -17.57372 -17.49698 -17.21039 -16.64505 -16.48775 -16.33332 -16.01591 -15.58409 -15.30927 -15.05453 -14.74680 -14.54272 -14.36534 -14.30776 -14.14876 -13.66452 -13.45924 -13.30417 -13.22861 -13.13156 -13.02800 -12.87536 -12.73738 -12.70436 -12.44746 -12.15610 -11.89268 -11.82039 -11.64936 -11.31965 -11.09392 -10.84167 -10.23676 -10.18511 -9.91083 -9.76296 -9.06883 -7.97845 -5.26742 0.16027 0.73336 1.09034 1.45625 1.48102 1.49124 1.54307 1.54709 1.71466 1.99300 2.11087 2.52246 2.95337 3.24501 3.36185 3.49498 3.54418 3.63038 3.67204 3.87684 4.02310 4.05365 4.22719 4.25418 4.30043 4.35574 4.42332 4.45568 4.52840 4.58305 4.60116 4.63280 4.76909 4.82874 4.86991 4.91750 5.02252 5.12935 5.15256 5.31479 5.52650 5.56089 5.74751 5.75401 6.18390 6.21755 6.80216 7.04819 7.31509 7.59516 7.97630 8.19891 9.24028 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.009146 B = 0.004455 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3060.588946 B = 6282.992245 C = 8138.637183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.012 3.988 3 C -0.185 4.185 4 C -0.051 4.051 5 C 0.607 3.393 6 O -0.572 6.572 7 N -0.586 5.586 8 C 0.068 3.932 9 C 0.151 3.849 10 H 0.104 0.896 11 N -0.718 5.718 12 C -0.241 4.241 13 H 0.085 0.915 14 C -0.061 4.061 15 N -0.957 5.957 16 Si 0.960 3.040 17 H -0.289 1.289 18 H -0.305 1.305 19 H -0.269 1.269 20 C 0.119 3.881 21 H 0.169 0.831 22 N -0.261 5.261 23 C -0.022 4.022 24 C -0.061 4.061 25 N -0.304 5.304 26 N -0.105 5.105 27 C 0.112 3.888 28 N -0.269 5.269 29 C 0.083 3.917 30 N -0.297 5.297 31 H 0.090 0.910 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.191 0.809 35 H 0.121 0.879 36 H 0.089 0.911 37 H 0.377 0.623 38 H 0.249 0.751 39 H 0.186 0.814 40 H 0.204 0.796 41 H 0.067 0.933 42 H 0.110 0.890 43 H 0.098 0.902 44 H 0.097 0.903 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.122 -6.974 -14.470 16.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.144 4.144 3 C -0.213 4.213 4 C -0.179 4.179 5 C 0.396 3.604 6 O -0.453 6.453 7 N -0.318 5.318 8 C -0.057 4.057 9 C 0.038 3.962 10 H 0.121 0.879 11 N -0.358 5.358 12 C -0.372 4.372 13 H 0.103 0.897 14 C -0.255 4.255 15 N -0.606 5.606 16 Si 0.791 3.209 17 H -0.217 1.217 18 H -0.232 1.232 19 H -0.194 1.194 20 C 0.016 3.984 21 H 0.187 0.813 22 N -0.054 5.054 23 C -0.174 4.174 24 C -0.218 4.218 25 N -0.170 5.170 26 N -0.084 5.084 27 C -0.012 4.012 28 N -0.057 5.057 29 C -0.056 4.056 30 N -0.132 5.132 31 H 0.109 0.891 32 H 0.090 0.910 33 H 0.111 0.889 34 H 0.208 0.792 35 H 0.139 0.861 36 H 0.107 0.893 37 H 0.211 0.789 38 H 0.058 0.942 39 H 0.203 0.797 40 H 0.221 0.779 41 H 0.085 0.915 42 H 0.128 0.872 43 H 0.117 0.883 44 H 0.116 0.884 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -3.973 -7.223 -15.180 17.274 hybrid contribution 0.365 -0.426 2.102 2.176 sum -3.608 -7.650 -13.078 15.575 Atomic orbital electron populations 1.20224 0.83944 1.04117 1.03994 1.22682 0.98749 0.88435 1.04563 1.22947 0.89625 1.01969 1.06789 1.21261 0.95780 0.85675 1.15192 1.16561 0.86600 0.80724 0.76554 1.90748 1.31029 1.70377 1.53159 1.47703 1.10949 1.04130 1.68994 1.23934 0.87332 0.92667 1.01731 1.22104 0.93514 0.96326 0.84215 0.87850 1.42453 1.15205 1.78155 1.00027 1.19534 0.94673 1.35845 0.87172 0.89677 1.25389 0.98407 1.02618 0.99060 1.69754 1.22477 1.53113 1.15249 0.85340 0.78869 0.77764 0.78946 1.21677 1.23182 1.19398 1.23343 0.88012 0.90615 0.96450 0.81348 1.47076 1.26669 1.06693 1.24983 1.23513 0.96341 1.02729 0.94806 1.23820 1.05392 0.88460 1.04103 1.74943 1.08794 1.26947 1.06294 1.78067 1.15187 0.94239 1.20952 1.22114 0.88983 0.85996 1.04102 1.45745 1.05523 1.04439 1.49964 1.22450 0.84999 0.92604 1.05580 1.73085 0.89727 1.28836 1.21554 0.89111 0.90984 0.88930 0.79205 0.86145 0.89332 0.78850 0.94228 0.79680 0.77906 0.91522 0.87236 0.88338 0.88434 0.87490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.06 10.45 71.24 0.74 -0.32 16 2 C 0.01 0.29 7.22 43.05 0.31 0.60 16 3 C -0.18 -4.61 9.21 22.66 0.21 -4.40 16 4 C -0.05 -1.49 6.89 40.78 0.28 -1.20 16 5 C 0.61 18.52 7.81 86.59 0.68 19.20 16 6 O -0.57 -19.71 15.03 -4.15 -0.06 -19.77 16 7 N -0.59 -15.44 3.32 -815.49 -2.71 -18.15 16 8 C 0.07 1.60 4.84 86.93 0.42 2.02 16 9 C 0.15 4.36 3.58 46.46 0.17 4.53 16 10 H 0.10 2.82 8.09 -2.39 -0.02 2.81 16 11 N -0.72 -29.73 4.71 -316.01 -1.49 -31.22 16 12 C -0.24 -11.60 9.96 84.03 0.84 -10.77 16 13 H 0.09 3.85 7.83 -2.91 -0.02 3.83 16 14 C -0.06 -3.22 5.50 84.86 0.47 -2.75 16 15 N -0.96 -54.04 13.06 21.65 0.28 -53.76 16 16 Si 0.96 43.62 29.55 68.60 2.03 45.64 16 17 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 18 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 19 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 20 C 0.12 2.94 3.85 46.18 0.18 3.12 16 21 H 0.17 2.91 8.14 -2.38 -0.02 2.89 16 22 N -0.26 -8.34 3.14 -321.52 -1.01 -9.35 16 23 C -0.02 -0.76 8.48 83.49 0.71 -0.06 16 24 C -0.06 -2.11 12.06 83.73 1.01 -1.10 16 25 N -0.30 -11.72 12.41 -58.26 -0.72 -12.44 16 26 N -0.11 -3.84 13.16 37.02 0.49 -3.36 16 27 C 0.11 2.72 6.48 86.73 0.56 3.28 16 28 N -0.27 -7.62 3.75 -356.03 -1.33 -8.96 16 29 C 0.08 1.85 10.89 127.77 1.39 3.24 16 30 N -0.30 -8.40 11.90 -47.49 -0.57 -8.97 16 31 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 32 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.19 3.74 4.99 -2.91 -0.01 3.73 16 35 H 0.12 1.77 7.78 -2.39 -0.02 1.75 16 36 H 0.09 2.44 5.93 -2.39 -0.01 2.43 16 37 H 0.38 17.07 5.25 -92.71 -0.49 16.59 16 38 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 39 H 0.19 6.18 6.48 -2.91 -0.02 6.16 16 40 H 0.20 5.88 8.06 -2.91 -0.02 5.86 16 41 H 0.07 1.89 6.03 -2.38 -0.01 1.88 16 42 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 43 H 0.10 1.81 8.14 -2.38 -0.02 1.79 16 44 H 0.10 2.45 6.22 -2.39 -0.01 2.43 16 45 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -72.32 370.51 3.43 -68.89 By element: Atomic # 1 Polarization: 35.49 SS G_CDS: 0.57 Total: 36.06 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: 7.96 Total: 15.38 kcal Atomic # 7 Polarization: -139.14 SS G_CDS: -7.06 Total: -146.21 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -0.06 Total: -19.77 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Total: -72.32 3.43 -68.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070152176.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 232.675 kcal (2) G-P(sol) polarization free energy of solvation -72.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 160.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 163.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds