Wall clock time and date at job start Sat Apr 11 2020 07:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30460 * 125.98872 * 2 1 4 4 N 1.39935 * 108.89385 * 180.26271 * 3 2 1 5 5 C 1.46503 * 125.75175 * 179.77628 * 4 3 2 6 6 C 1.34255 * 108.49611 * 359.74758 * 4 3 2 7 7 C 1.38052 * 107.41567 * 0.02562 * 6 4 3 8 8 C 1.47424 * 126.41327 * 179.97438 * 7 6 4 9 9 O 1.21608 * 119.99899 * 155.40826 * 8 7 6 10 10 N 1.34784 * 120.00216 * 335.41069 * 8 7 6 11 11 C 1.47423 * 125.64682 * 354.59883 * 10 8 7 12 12 C 1.55384 * 104.87296 * 204.09956 * 11 10 8 13 13 H 1.09000 * 111.02700 * 80.98506 * 12 11 10 14 14 N 1.46498 * 111.18891 * 204.98295 * 12 11 10 15 15 C 1.36939 * 120.00154 * 267.04103 * 14 12 11 16 16 H 1.08004 * 119.99696 * 359.97438 * 15 14 12 17 17 C 1.38811 * 120.00409 * 179.97438 * 15 14 12 18 18 N 1.31628 * 119.99710 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00390 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47018 * 59.99738 * 19 17 15 21 21 H 1.48500 * 109.47399 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.46994 * 300.00317 * 19 17 15 23 23 C 1.55160 * 101.36861 * 323.01763 * 12 11 10 24 24 H 1.08996 * 110.72172 * 153.94341 * 23 12 11 25 25 N 1.46505 * 110.72098 * 277.04626 * 23 12 11 26 26 C 1.35311 * 125.86771 * 82.85152 * 25 23 12 27 27 C 1.35351 * 106.17382 * 180.18577 * 26 25 23 28 28 N 1.33777 * 106.49636 * 359.59091 * 27 26 25 29 29 N 1.28641 * 108.88197 * 0.26176 * 28 27 26 30 30 C 1.47018 * 125.64666 * 174.56217 * 10 8 7 31 31 H 1.08996 * 109.47198 * 270.14882 * 1 2 3 32 32 H 1.09005 * 109.47144 * 30.14531 * 1 2 3 33 33 H 1.08997 * 109.47298 * 150.14412 * 1 2 3 34 34 H 1.09001 * 109.46750 * 269.97372 * 5 4 3 35 35 H 1.09000 * 109.46959 * 29.96978 * 5 4 3 36 36 H 1.08995 * 109.47008 * 149.97194 * 5 4 3 37 37 H 1.08000 * 126.29668 * 179.97438 * 6 4 3 38 38 H 1.09004 * 110.36788 * 322.93557 * 11 10 8 39 39 H 1.09000 * 110.36131 * 85.14665 * 11 10 8 40 40 H 0.97003 * 120.00457 * 87.03571 * 14 12 11 41 41 H 0.96998 * 119.99662 * 179.97438 * 18 17 15 42 42 H 1.08002 * 126.91424 * 0.04148 * 26 25 23 43 43 H 1.07993 * 126.75130 * 179.84943 * 27 26 25 44 44 H 1.09002 * 109.88508 * 59.56038 * 30 10 8 45 45 H 1.08997 * 110.01355 * 298.46496 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0556 0.0000 4 7 3.6111 0.6443 -0.0061 5 6 4.7787 1.5291 -0.0127 6 6 3.6439 -0.6979 -0.0042 7 6 2.3372 -1.1432 0.0024 8 6 1.8916 -2.5484 0.0060 9 8 0.7970 -2.8380 0.4498 10 7 2.6973 -3.5122 -0.4824 11 6 3.9936 -3.2922 -1.1491 12 6 4.2034 -4.5493 -2.0380 13 1 3.6478 -4.4650 -2.9720 14 7 5.6263 -4.7843 -2.2955 15 6 6.2132 -4.2677 -3.4197 16 1 5.6268 -3.6874 -4.1169 17 6 7.5615 -4.4899 -3.6635 18 7 8.2762 -5.1967 -2.8136 19 14 8.3619 -3.7859 -5.1974 20 1 8.2386 -2.3061 -5.1854 21 1 9.7981 -4.1623 -5.2236 22 1 7.6852 -4.3292 -6.4026 23 6 3.6099 -5.6639 -1.1365 24 1 3.2565 -6.5003 -1.7394 25 7 4.5977 -6.1166 -0.1538 26 6 4.8712 -5.5186 1.0288 27 6 5.8420 -6.2606 1.6110 28 7 6.1049 -7.2683 0.7713 29 7 5.3510 -7.1543 -0.2648 30 6 2.4292 -4.9571 -0.4379 31 1 -0.3633 0.0027 1.0276 32 1 -0.3634 0.8887 -0.5161 33 1 -0.3634 -0.8912 -0.5116 34 1 5.0635 1.7470 -1.0420 35 1 4.5331 2.4586 0.5009 36 1 5.6081 1.0399 0.4981 37 1 4.5297 -1.3157 -0.0081 38 1 3.9556 -2.3941 -1.7656 39 1 4.7910 -3.2109 -0.4103 40 1 6.1529 -5.3057 -1.6695 41 1 9.2183 -5.3523 -2.9841 42 1 4.4096 -4.6270 1.4269 43 1 6.3091 -6.0778 2.5674 44 1 1.5008 -5.1783 -0.9645 45 1 2.3568 -5.2914 0.5970 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070160768.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:30:14 Heat of formation + Delta-G solvation = 156.198499 kcal Electronic energy + Delta-G solvation = -31185.450919 eV Core-core repulsion = 27049.441300 eV Total energy + Delta-G solvation = -4136.009619 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.18831 -42.48945 -40.79209 -38.85387 -35.97891 -34.98435 -34.88793 -33.05536 -32.18162 -31.78769 -30.45844 -30.18242 -29.15183 -27.05687 -25.91577 -25.11210 -23.62950 -23.46547 -22.40336 -21.81005 -21.12052 -20.20491 -19.48907 -18.76406 -18.12942 -17.49696 -17.05557 -16.84300 -16.54749 -16.30482 -16.18659 -15.92494 -15.38581 -15.33894 -15.06822 -14.68795 -14.60867 -14.35295 -14.26412 -14.12798 -13.71494 -13.48648 -13.35983 -13.11881 -12.99660 -12.95589 -12.92203 -12.71508 -12.53114 -12.41974 -12.14279 -11.94230 -11.87456 -11.76980 -11.20624 -10.98014 -10.85855 -10.38021 -10.20850 -9.87138 -9.59731 -9.13639 -7.96161 -5.30355 0.50264 0.77109 1.09116 1.37676 1.45893 1.48289 1.50867 1.56684 1.76530 1.88495 2.29757 2.52508 3.01211 3.25109 3.37444 3.52286 3.65481 3.65919 3.74719 4.00217 4.01288 4.06572 4.14764 4.22550 4.24965 4.38143 4.39335 4.39809 4.46513 4.54933 4.61016 4.67886 4.74627 4.78382 4.91348 4.95396 4.96240 4.99328 5.16426 5.35161 5.50025 5.50586 5.76408 5.84633 6.19803 6.37347 6.56043 7.14247 7.29518 7.67061 7.96669 8.19223 9.24567 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.008745 B = 0.004392 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3201.088305 B = 6374.294596 C = 8278.792440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.117 3.883 3 N -0.326 5.326 4 N -0.359 5.359 5 C 0.085 3.915 6 C 0.114 3.886 7 C -0.310 4.310 8 C 0.618 3.382 9 O -0.568 6.568 10 N -0.608 5.608 11 C 0.083 3.917 12 C 0.159 3.841 13 H 0.102 0.898 14 N -0.720 5.720 15 C -0.251 4.251 16 H 0.087 0.913 17 C -0.062 4.062 18 N -0.960 5.960 19 Si 0.969 3.031 20 H -0.272 1.272 21 H -0.303 1.303 22 H -0.280 1.280 23 C 0.114 3.886 24 H 0.142 0.858 25 N -0.266 5.266 26 C -0.040 4.040 27 C -0.062 4.062 28 N -0.311 5.311 29 N -0.108 5.108 30 C 0.118 3.882 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.115 0.885 37 H 0.202 0.798 38 H 0.085 0.915 39 H 0.069 0.931 40 H 0.380 0.620 41 H 0.250 0.750 42 H 0.207 0.793 43 H 0.215 0.785 44 H 0.115 0.885 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.839 11.305 7.881 18.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.050 4.050 3 N -0.148 5.148 4 N -0.136 5.136 5 C -0.054 4.054 6 C -0.039 4.039 7 C -0.325 4.325 8 C 0.409 3.591 9 O -0.448 6.448 10 N -0.342 5.342 11 C -0.043 4.043 12 C 0.046 3.954 13 H 0.120 0.880 14 N -0.360 5.360 15 C -0.382 4.382 16 H 0.105 0.895 17 C -0.255 4.255 18 N -0.609 5.609 19 Si 0.798 3.202 20 H -0.198 1.198 21 H -0.230 1.230 22 H -0.206 1.206 23 C 0.011 3.989 24 H 0.159 0.841 25 N -0.060 5.060 26 C -0.191 4.191 27 C -0.219 4.219 28 N -0.176 5.176 29 N -0.087 5.087 30 C -0.006 4.006 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.109 0.891 35 H 0.121 0.879 36 H 0.133 0.867 37 H 0.218 0.782 38 H 0.103 0.897 39 H 0.087 0.913 40 H 0.214 0.786 41 H 0.059 0.941 42 H 0.224 0.776 43 H 0.231 0.769 44 H 0.132 0.868 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.831 11.469 7.057 17.925 hybrid contribution 1.016 0.026 -0.031 1.017 sum -10.814 11.495 7.026 17.276 Atomic orbital electron populations 1.20245 0.84790 1.03648 1.03930 1.22738 0.98042 0.88751 0.95464 1.77113 0.87101 1.23059 1.27559 1.48657 1.06333 1.05267 1.53319 1.22392 0.82973 0.94750 1.05285 1.23648 0.99233 0.85501 0.95515 1.20107 0.93015 0.93617 1.25743 1.16923 0.82711 0.83269 0.76194 1.90744 1.21698 1.83143 1.49175 1.48157 1.21428 1.05831 1.58782 1.23435 0.83627 1.01356 0.95890 1.21990 0.86533 0.90527 0.96362 0.88003 1.42437 1.04791 1.62646 1.26097 1.19563 0.92530 1.26430 0.99705 0.89512 1.25549 0.97594 1.01156 1.01222 1.69866 1.07383 1.44984 1.38636 0.85297 0.76762 0.78399 0.79719 1.19785 1.22992 1.20586 1.23308 0.86638 1.00158 0.88833 0.84075 1.47404 1.26535 1.17585 1.14430 1.23855 1.03222 1.03642 0.88373 1.24106 1.00207 0.94359 1.03267 1.75052 1.18924 1.23644 0.99967 1.78342 1.04330 1.06873 1.19158 1.22150 0.96454 0.79780 1.02192 0.89527 0.89735 0.90334 0.89115 0.87921 0.86668 0.78153 0.89692 0.91331 0.78613 0.94140 0.77639 0.76866 0.86751 0.89440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.40 9.81 71.23 0.70 -0.70 16 2 C 0.12 2.95 7.26 43.51 0.32 3.26 16 3 N -0.33 -8.18 12.50 -46.68 -0.58 -8.77 16 4 N -0.36 -7.39 3.98 -367.78 -1.46 -8.85 16 5 C 0.09 1.00 11.44 127.77 1.46 2.47 16 6 C 0.11 2.41 9.68 84.28 0.82 3.23 16 7 C -0.31 -7.73 5.79 -20.15 -0.12 -7.85 16 8 C 0.62 16.21 7.71 86.66 0.67 16.88 16 9 O -0.57 -17.50 15.97 -4.06 -0.06 -17.56 16 10 N -0.61 -14.02 3.33 -814.69 -2.71 -16.73 16 11 C 0.08 2.11 4.47 87.02 0.39 2.49 16 12 C 0.16 4.91 3.60 46.55 0.17 5.08 16 13 H 0.10 3.01 8.09 -2.39 -0.02 2.99 16 14 N -0.72 -31.51 5.22 -315.59 -1.65 -33.16 16 15 C -0.25 -12.33 9.96 84.03 0.84 -11.49 16 16 H 0.09 3.95 7.83 -2.91 -0.02 3.93 16 17 C -0.06 -3.28 5.50 84.86 0.47 -2.81 16 18 N -0.96 -56.64 13.06 21.65 0.28 -56.36 16 19 Si 0.97 43.10 29.55 68.60 2.03 45.12 16 20 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 21 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 22 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 23 C 0.11 3.01 3.96 46.18 0.18 3.19 16 24 H 0.14 3.47 8.14 -2.39 -0.02 3.45 16 25 N -0.27 -8.40 2.31 -321.52 -0.74 -9.14 16 26 C -0.04 -1.08 9.26 83.49 0.77 -0.31 16 27 C -0.06 -1.87 12.05 83.73 1.01 -0.86 16 28 N -0.31 -12.36 12.41 -58.26 -0.72 -13.08 16 29 N -0.11 -4.35 12.43 37.02 0.46 -3.89 16 30 C 0.12 2.49 5.92 86.73 0.51 3.01 16 31 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 33 H 0.08 1.72 7.28 -2.39 -0.02 1.71 16 34 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.20 3.54 5.92 -2.91 -0.02 3.52 16 38 H 0.08 2.15 6.92 -2.39 -0.02 2.14 16 39 H 0.07 1.80 6.55 -2.39 -0.02 1.78 16 40 H 0.38 18.84 6.11 -92.71 -0.57 18.27 16 41 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 42 H 0.21 4.26 7.70 -2.91 -0.02 4.24 16 43 H 0.21 4.69 8.06 -2.91 -0.02 4.66 16 44 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 45 H 0.09 1.79 7.29 -2.39 -0.02 1.78 16 Total: -1.00 -75.55 375.53 3.49 -72.06 By element: Atomic # 1 Polarization: 34.31 SS G_CDS: 0.48 Total: 34.78 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: 8.18 Total: 15.58 kcal Atomic # 7 Polarization: -142.85 SS G_CDS: -7.13 Total: -149.98 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -0.06 Total: -17.56 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Total: -75.55 3.49 -72.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070160768.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 228.259 kcal (2) G-P(sol) polarization free energy of solvation -75.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 156.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds