Wall clock time and date at job start Sat Apr 11 2020 07:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34498 * 126.47591 * 2 1 4 4 N 1.30856 * 109.16285 * 179.71744 * 3 2 1 5 5 C 1.33321 * 109.68854 * 0.41184 * 4 3 2 6 6 C 1.36659 * 107.78209 * 359.59518 * 5 4 3 7 7 C 1.46772 * 126.84523 * 180.24558 * 6 5 4 8 8 O 1.21674 * 120.00016 * 171.89989 * 7 6 5 9 9 N 1.34780 * 119.99577 * 351.89605 * 7 6 5 10 10 C 1.47420 * 125.64996 * 1.29026 * 9 7 6 11 11 C 1.54911 * 104.83278 * 204.09100 * 10 9 7 12 12 C 1.55164 * 101.57765 * 322.98382 * 11 10 9 13 13 H 1.08992 * 110.72196 * 276.96718 * 12 11 10 14 14 N 1.46499 * 110.71975 * 153.86630 * 12 11 10 15 15 C 1.35321 * 125.86766 * 275.00381 * 14 12 11 16 16 C 1.35345 * 106.17481 * 179.97438 * 15 14 12 17 17 C 1.50696 * 126.75427 * 179.97438 * 16 15 14 18 18 N 1.46499 * 109.47307 * 94.99906 * 17 16 15 19 19 C 1.36938 * 120.00211 * 180.02562 * 18 17 16 20 20 H 1.08000 * 119.99802 * 359.97438 * 19 18 17 21 21 C 1.38807 * 119.99901 * 180.02562 * 19 18 17 22 22 N 1.31616 * 120.00385 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00015 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46854 * 89.99749 * 23 21 19 25 25 H 1.48500 * 109.47459 * 209.99793 * 23 21 19 26 26 H 1.48501 * 109.46921 * 330.00473 * 23 21 19 27 27 N 1.33780 * 106.49737 * 359.97438 * 16 15 14 28 28 N 1.28635 * 108.88278 * 359.73720 * 27 16 15 29 29 C 1.47016 * 125.64609 * 180.97340 * 9 7 6 30 30 H 1.09002 * 109.47051 * 274.80488 * 1 2 3 31 31 H 1.09003 * 109.47039 * 34.79861 * 1 2 3 32 32 H 1.08999 * 109.47078 * 154.80218 * 1 2 3 33 33 H 1.07996 * 125.41527 * 359.96926 * 3 2 1 34 34 H 1.07999 * 126.10810 * 179.85998 * 5 4 3 35 35 H 1.09005 * 110.36495 * 322.92259 * 10 9 7 36 36 H 1.09000 * 110.37133 * 85.24605 * 10 9 7 37 37 H 1.08992 * 111.00427 * 81.05723 * 11 10 9 38 38 H 1.08994 * 111.00317 * 204.87743 * 11 10 9 39 39 H 1.08001 * 126.90995 * 0.02562 * 15 14 12 40 40 H 1.08999 * 109.47635 * 215.00172 * 17 16 15 41 41 H 1.08998 * 109.47076 * 335.00557 * 17 16 15 42 42 H 0.97004 * 119.99722 * 0.02562 * 18 17 16 43 43 H 0.97000 * 120.00421 * 180.02562 * 22 21 19 44 44 H 1.09001 * 109.88598 * 298.39872 * 29 9 7 45 45 H 1.08998 * 109.88300 * 59.56351 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2646 1.0815 0.0000 4 7 3.5138 0.6921 0.0061 5 6 3.5691 -0.6400 0.0012 6 6 2.2862 -1.1109 0.0007 7 6 1.8648 -2.5168 0.0010 8 8 0.6908 -2.8000 0.1490 9 7 2.7784 -3.4942 -0.1627 10 6 4.2301 -3.2950 -0.3246 11 6 4.7231 -4.5598 -1.0708 12 6 3.8347 -5.6621 -0.4359 13 1 4.2578 -6.0014 0.5096 14 7 3.6652 -6.7869 -1.3591 15 6 2.7380 -6.8740 -2.3409 16 6 2.9384 -8.0690 -2.9438 17 6 2.1584 -8.6372 -4.1012 18 7 2.8506 -8.3288 -5.3550 19 6 2.3246 -8.7467 -6.5483 20 1 1.3997 -9.3040 -6.5650 21 6 2.9808 -8.4548 -7.7361 22 7 4.1082 -7.7760 -7.7156 23 14 2.2637 -9.0255 -9.3639 24 1 1.3548 -7.9797 -9.8981 25 1 3.3636 -9.2670 -10.3319 26 1 1.5024 -10.2834 -9.1555 27 7 3.9653 -8.6468 -2.3101 28 7 4.3771 -7.8590 -1.3803 29 6 2.4930 -4.9358 -0.2028 30 1 -0.3633 0.0861 1.0241 31 1 -0.3633 0.8439 -0.5865 32 1 -0.3633 -0.9299 -0.4375 33 1 1.9289 2.1080 -0.0005 34 1 4.4673 -1.2397 0.0022 35 1 4.4265 -2.4029 -0.9194 36 1 4.7133 -3.2165 0.6493 37 1 4.5388 -4.4782 -2.1419 38 1 5.7785 -4.7447 -0.8710 39 1 1.9893 -6.1376 -2.5931 40 1 2.0759 -9.7182 -3.9882 41 1 1.1616 -8.1966 -4.1187 42 1 3.6815 -7.8285 -5.3398 43 1 4.5665 -7.5718 -8.5458 44 1 2.0567 -5.2539 0.7441 45 1 1.8076 -5.1554 -1.0214 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098688610.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:31:30 Heat of formation + Delta-G solvation = 175.354618 kcal Electronic energy + Delta-G solvation = -29408.594921 eV Core-core repulsion = 25273.415974 eV Total energy + Delta-G solvation = -4135.178947 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.10971 -42.72493 -40.31843 -38.09432 -35.17703 -34.61363 -34.01760 -31.98804 -31.39130 -30.80176 -29.90821 -28.84032 -27.57441 -26.02837 -25.21500 -23.36509 -22.87373 -22.53418 -21.93521 -20.92519 -20.57938 -20.04033 -18.06054 -17.75761 -17.12847 -16.88105 -16.53726 -16.27239 -15.94182 -15.71926 -14.94518 -14.75712 -14.59726 -14.41719 -14.33392 -13.98805 -13.72448 -13.49731 -13.40611 -13.23180 -13.17018 -12.95428 -12.68705 -12.39876 -12.23261 -11.86598 -11.56409 -11.26621 -10.91854 -10.89619 -10.80352 -10.50840 -10.34192 -10.23118 -10.09090 -9.90593 -9.72887 -9.35876 -9.09820 -8.90335 -8.86158 -6.91530 -5.73630 -3.03250 0.80251 1.70549 1.74947 2.22638 2.35865 2.66416 2.82348 2.87174 3.46019 3.51176 3.51991 3.53326 3.78197 4.01939 4.08676 4.28574 4.31185 4.34544 4.51425 4.57166 4.63091 4.69754 4.74067 4.79900 4.93620 5.05019 5.05767 5.08442 5.21733 5.27037 5.42733 5.47578 5.51361 5.62591 5.65106 5.80007 5.95469 6.17224 6.37413 6.50779 6.64384 6.70345 6.75856 6.77216 7.35235 7.55670 7.71740 8.43592 8.78623 9.55474 10.10809 10.46831 11.49149 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.011964 B = 0.002334 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.860098 B =11994.064722 C =13115.399343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.427 5.427 3 C 0.210 3.790 4 N -0.496 5.496 5 C 0.026 3.974 6 C -0.085 4.085 7 C 0.614 3.386 8 O -0.538 6.538 9 N -0.605 5.605 10 C 0.084 3.916 11 C -0.143 4.143 12 C 0.137 3.863 13 H 0.132 0.868 14 N -0.294 5.294 15 C -0.046 4.046 16 C 0.000 4.000 17 C 0.232 3.768 18 N -0.726 5.726 19 C -0.239 4.239 20 H 0.073 0.927 21 C -0.013 4.013 22 N -0.932 5.932 23 Si 0.909 3.091 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.281 1.281 27 N -0.250 5.250 28 N -0.090 5.090 29 C 0.104 3.896 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.105 0.895 33 H 0.214 0.786 34 H 0.191 0.809 35 H 0.103 0.897 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.106 0.894 39 H 0.187 0.813 40 H 0.040 0.960 41 H 0.038 0.962 42 H 0.385 0.615 43 H 0.255 0.745 44 H 0.092 0.908 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.775 19.094 22.166 29.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.107 5.107 3 C -0.072 4.072 4 N -0.214 5.214 5 C -0.128 4.128 6 C -0.202 4.202 7 C 0.404 3.596 8 O -0.416 6.416 9 N -0.339 5.339 10 C -0.038 4.038 11 C -0.182 4.182 12 C 0.034 3.966 13 H 0.149 0.851 14 N -0.088 5.088 15 C -0.196 4.196 16 C -0.137 4.137 17 C 0.103 3.897 18 N -0.370 5.370 19 C -0.370 4.370 20 H 0.091 0.909 21 C -0.209 4.209 22 N -0.581 5.581 23 Si 0.740 3.260 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.207 1.207 27 N -0.118 5.118 28 N -0.069 5.069 29 C -0.020 4.020 30 H 0.101 0.899 31 H 0.108 0.892 32 H 0.123 0.877 33 H 0.231 0.769 34 H 0.208 0.792 35 H 0.121 0.879 36 H 0.106 0.894 37 H 0.114 0.886 38 H 0.125 0.875 39 H 0.204 0.796 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.219 0.781 43 H 0.065 0.935 44 H 0.110 0.890 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.949 18.669 22.802 29.617 hybrid contribution -1.603 0.200 -1.364 2.114 sum -4.552 18.869 21.438 28.920 Atomic orbital electron populations 1.22335 0.75003 1.06055 1.04301 1.45282 1.08469 1.05657 1.51266 1.25228 0.85548 0.93681 1.02782 1.70219 1.19018 1.12110 1.20044 1.23368 0.95709 0.91495 1.02228 1.20497 0.91687 0.88401 1.19621 1.16287 0.84237 0.82568 0.76507 1.90830 1.16680 1.83515 1.50615 1.47810 1.07890 1.05555 1.72653 1.22970 0.79811 0.99618 1.01437 1.23331 1.01064 0.91915 1.01916 1.22469 0.96768 0.84092 0.93306 0.85068 1.47089 1.22869 1.14953 1.23909 1.23292 0.99832 1.01992 0.94443 1.22457 0.97622 0.93165 1.00498 1.18963 0.92201 0.97268 0.81315 1.42297 1.27802 1.67164 0.99777 1.19228 1.05027 1.28809 0.83968 0.90879 1.24755 0.97331 1.01051 0.97784 1.69677 1.17608 1.44483 1.26292 0.86159 0.77787 0.78236 0.83819 1.21754 1.21778 1.20651 1.75117 1.10555 1.22637 1.03485 1.78282 1.17652 0.92149 1.18793 1.22195 0.95754 0.79382 1.04635 0.89883 0.89184 0.87687 0.76914 0.79234 0.87888 0.89398 0.88640 0.87515 0.79611 0.94223 0.94460 0.78118 0.93519 0.89021 0.89171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.35 10.74 59.85 0.64 0.99 16 2 N -0.43 -3.31 3.17 -121.97 -0.39 -3.70 16 3 C 0.21 1.46 12.52 -90.57 -1.13 0.33 16 4 N -0.50 -4.64 11.20 -14.43 -0.16 -4.80 16 5 C 0.03 0.22 10.21 -17.48 -0.18 0.04 16 6 C -0.09 -0.78 6.86 -82.14 -0.56 -1.35 16 7 C 0.61 6.27 7.81 -12.81 -0.10 6.17 16 8 O -0.54 -6.92 15.22 5.21 0.08 -6.85 16 9 N -0.60 -4.85 3.33 -172.02 -0.57 -5.42 16 10 C 0.08 0.44 5.28 -2.53 -0.01 0.43 16 11 C -0.14 -0.97 6.77 -24.58 -0.17 -1.14 16 12 C 0.14 1.13 4.01 -66.09 -0.26 0.86 16 13 H 0.13 0.83 8.14 -51.93 -0.42 0.40 16 14 N -0.29 -3.87 3.38 -52.97 -0.18 -4.05 16 15 C -0.05 -0.68 10.48 -17.04 -0.18 -0.86 16 16 C 0.00 0.00 6.61 -82.78 -0.55 -0.55 16 17 C 0.23 4.88 6.82 -5.20 -0.04 4.84 16 18 N -0.73 -19.01 5.59 -61.09 -0.34 -19.35 16 19 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 20 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 21 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 22 N -0.93 -28.72 13.06 55.49 0.72 -28.00 16 23 Si 0.91 22.60 29.55 -169.99 -5.02 17.57 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 26 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 27 N -0.25 -5.00 12.41 33.29 0.41 -4.58 16 28 N -0.09 -1.52 13.16 60.35 0.79 -0.73 16 29 C 0.10 0.85 6.47 -3.06 -0.02 0.83 16 30 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.10 0.78 6.42 -51.93 -0.33 0.45 16 33 H 0.21 0.58 8.06 -52.49 -0.42 0.16 16 34 H 0.19 1.07 4.73 -52.49 -0.25 0.82 16 35 H 0.10 0.49 5.31 -51.93 -0.28 0.22 16 36 H 0.09 0.26 8.04 -51.93 -0.42 -0.15 16 37 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.11 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.19 2.29 6.84 -52.49 -0.36 1.94 16 40 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.39 10.85 7.66 -40.82 -0.31 10.54 16 43 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 44 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.09 0.85 5.83 -51.93 -0.30 0.55 16 LS Contribution 375.64 15.07 5.66 5.66 Total: -1.00 -38.61 375.64 -7.40 -46.01 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -5.60 Total: 5.04 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: -2.81 Total: 3.19 kcal Atomic # 7 Polarization: -70.92 SS G_CDS: 0.29 Total: -70.63 kcal Atomic # 8 Polarization: -6.92 SS G_CDS: 0.08 Total: -6.85 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -38.61 -7.40 -46.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098688610.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 221.367 kcal (2) G-P(sol) polarization free energy of solvation -38.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 182.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 175.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds