Wall clock time and date at job start Sat Apr 11 2020 07:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34498 * 126.47591 * 2 1 4 4 N 1.30856 * 109.16285 * 179.71744 * 3 2 1 5 5 C 1.33321 * 109.68854 * 0.41184 * 4 3 2 6 6 C 1.36659 * 107.78209 * 359.59518 * 5 4 3 7 7 C 1.46772 * 126.84523 * 180.24558 * 6 5 4 8 8 O 1.21674 * 120.00016 * 171.89989 * 7 6 5 9 9 N 1.34780 * 119.99577 * 351.89605 * 7 6 5 10 10 C 1.47420 * 125.64996 * 1.29026 * 9 7 6 11 11 C 1.54911 * 104.83278 * 204.09100 * 10 9 7 12 12 C 1.55164 * 101.57765 * 322.98382 * 11 10 9 13 13 H 1.08992 * 110.72196 * 276.96718 * 12 11 10 14 14 N 1.46499 * 110.71975 * 153.86630 * 12 11 10 15 15 C 1.35321 * 125.86766 * 275.00381 * 14 12 11 16 16 C 1.35345 * 106.17481 * 179.97438 * 15 14 12 17 17 C 1.50696 * 126.75427 * 179.97438 * 16 15 14 18 18 N 1.46499 * 109.47307 * 94.99906 * 17 16 15 19 19 C 1.36938 * 120.00211 * 180.02562 * 18 17 16 20 20 H 1.08000 * 119.99802 * 359.97438 * 19 18 17 21 21 C 1.38807 * 119.99901 * 180.02562 * 19 18 17 22 22 N 1.31616 * 120.00385 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00015 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46854 * 89.99749 * 23 21 19 25 25 H 1.48500 * 109.47459 * 209.99793 * 23 21 19 26 26 H 1.48501 * 109.46921 * 330.00473 * 23 21 19 27 27 N 1.33780 * 106.49737 * 359.97438 * 16 15 14 28 28 N 1.28635 * 108.88278 * 359.73720 * 27 16 15 29 29 C 1.47016 * 125.64609 * 180.97340 * 9 7 6 30 30 H 1.09002 * 109.47051 * 274.80488 * 1 2 3 31 31 H 1.09003 * 109.47039 * 34.79861 * 1 2 3 32 32 H 1.08999 * 109.47078 * 154.80218 * 1 2 3 33 33 H 1.07996 * 125.41527 * 359.96926 * 3 2 1 34 34 H 1.07999 * 126.10810 * 179.85998 * 5 4 3 35 35 H 1.09005 * 110.36495 * 322.92259 * 10 9 7 36 36 H 1.09000 * 110.37133 * 85.24605 * 10 9 7 37 37 H 1.08992 * 111.00427 * 81.05723 * 11 10 9 38 38 H 1.08994 * 111.00317 * 204.87743 * 11 10 9 39 39 H 1.08001 * 126.90995 * 0.02562 * 15 14 12 40 40 H 1.08999 * 109.47635 * 215.00172 * 17 16 15 41 41 H 1.08998 * 109.47076 * 335.00557 * 17 16 15 42 42 H 0.97004 * 119.99722 * 0.02562 * 18 17 16 43 43 H 0.97000 * 120.00421 * 180.02562 * 22 21 19 44 44 H 1.09001 * 109.88598 * 298.39872 * 29 9 7 45 45 H 1.08998 * 109.88300 * 59.56351 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2646 1.0815 0.0000 4 7 3.5138 0.6921 0.0061 5 6 3.5691 -0.6400 0.0012 6 6 2.2862 -1.1109 0.0007 7 6 1.8648 -2.5168 0.0010 8 8 0.6908 -2.8000 0.1490 9 7 2.7784 -3.4942 -0.1627 10 6 4.2301 -3.2950 -0.3246 11 6 4.7231 -4.5598 -1.0708 12 6 3.8347 -5.6621 -0.4359 13 1 4.2578 -6.0014 0.5096 14 7 3.6652 -6.7869 -1.3591 15 6 2.7380 -6.8740 -2.3409 16 6 2.9384 -8.0690 -2.9438 17 6 2.1584 -8.6372 -4.1012 18 7 2.8506 -8.3288 -5.3550 19 6 2.3246 -8.7467 -6.5483 20 1 1.3997 -9.3040 -6.5650 21 6 2.9808 -8.4548 -7.7361 22 7 4.1082 -7.7760 -7.7156 23 14 2.2637 -9.0255 -9.3639 24 1 1.3548 -7.9797 -9.8981 25 1 3.3636 -9.2670 -10.3319 26 1 1.5024 -10.2834 -9.1555 27 7 3.9653 -8.6468 -2.3101 28 7 4.3771 -7.8590 -1.3803 29 6 2.4930 -4.9358 -0.2028 30 1 -0.3633 0.0861 1.0241 31 1 -0.3633 0.8439 -0.5865 32 1 -0.3633 -0.9299 -0.4375 33 1 1.9289 2.1080 -0.0005 34 1 4.4673 -1.2397 0.0022 35 1 4.4265 -2.4029 -0.9194 36 1 4.7133 -3.2165 0.6493 37 1 4.5388 -4.4782 -2.1419 38 1 5.7785 -4.7447 -0.8710 39 1 1.9893 -6.1376 -2.5931 40 1 2.0759 -9.7182 -3.9882 41 1 1.1616 -8.1966 -4.1187 42 1 3.6815 -7.8285 -5.3398 43 1 4.5665 -7.5718 -8.5458 44 1 2.0567 -5.2539 0.7441 45 1 1.8076 -5.1554 -1.0214 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098688610.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:31:29 Heat of formation + Delta-G solvation = 147.357381 kcal Electronic energy + Delta-G solvation = -29409.808973 eV Core-core repulsion = 25273.415974 eV Total energy + Delta-G solvation = -4136.392998 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.35213 -43.29478 -41.00945 -38.86527 -36.85714 -35.52902 -34.88652 -33.72902 -32.28544 -31.74239 -31.28704 -29.54804 -28.04098 -27.74169 -26.05618 -24.80231 -24.22858 -23.19353 -22.59101 -22.22851 -21.53144 -20.65493 -19.41465 -18.72809 -18.36391 -17.52728 -17.35939 -17.16950 -16.84684 -16.56852 -16.37846 -16.01191 -15.58325 -15.33526 -15.19350 -15.11448 -14.84152 -14.59365 -14.35017 -14.09153 -13.88459 -13.87873 -13.62761 -13.57490 -13.05358 -12.99978 -12.83241 -12.73337 -12.58245 -12.14432 -12.09952 -11.90225 -11.83259 -11.57928 -11.03270 -11.01807 -10.96385 -10.78723 -10.26116 -10.00786 -9.67605 -9.03036 -7.94021 -5.24505 0.19584 0.52756 0.99990 1.41865 1.45697 1.50298 1.51603 1.60521 1.76525 2.06456 2.17846 2.58788 2.82828 3.16885 3.30509 3.39303 3.47610 3.65129 3.67135 3.81378 3.89942 3.90981 4.02793 4.06550 4.15645 4.21404 4.29889 4.34470 4.36483 4.45570 4.53677 4.55763 4.66133 4.73780 4.82774 4.90654 4.94448 5.09326 5.10827 5.15996 5.39533 5.50347 5.61371 6.02832 6.11597 6.25695 6.73983 6.91117 7.32603 7.46467 8.03193 8.29517 9.29877 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.011964 B = 0.002334 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.860098 B =11994.064722 C =13115.399343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.434 5.434 3 C 0.220 3.780 4 N -0.531 5.531 5 C 0.030 3.970 6 C -0.112 4.112 7 C 0.610 3.390 8 O -0.576 6.576 9 N -0.602 5.602 10 C 0.088 3.912 11 C -0.138 4.138 12 C 0.131 3.869 13 H 0.160 0.840 14 N -0.274 5.274 15 C -0.025 4.025 16 C -0.030 4.030 17 C 0.234 3.766 18 N -0.738 5.738 19 C -0.244 4.244 20 H 0.084 0.916 21 C -0.077 4.077 22 N -0.972 5.972 23 Si 0.978 3.022 24 H -0.284 1.284 25 H -0.297 1.297 26 H -0.268 1.268 27 N -0.294 5.294 28 N -0.096 5.096 29 C 0.106 3.894 30 H 0.092 0.908 31 H 0.120 0.880 32 H 0.080 0.920 33 H 0.252 0.748 34 H 0.212 0.788 35 H 0.110 0.890 36 H 0.121 0.879 37 H 0.072 0.928 38 H 0.126 0.874 39 H 0.211 0.789 40 H 0.032 0.968 41 H 0.059 0.941 42 H 0.371 0.629 43 H 0.251 0.749 44 H 0.101 0.899 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.134 20.810 23.309 31.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.114 5.114 3 C -0.062 4.062 4 N -0.249 5.249 5 C -0.124 4.124 6 C -0.229 4.229 7 C 0.401 3.599 8 O -0.457 6.457 9 N -0.335 5.335 10 C -0.034 4.034 11 C -0.177 4.177 12 C 0.030 3.970 13 H 0.178 0.822 14 N -0.069 5.069 15 C -0.177 4.177 16 C -0.168 4.168 17 C 0.106 3.894 18 N -0.381 5.381 19 C -0.376 4.376 20 H 0.102 0.898 21 C -0.269 4.269 22 N -0.622 5.622 23 Si 0.807 3.193 24 H -0.211 1.211 25 H -0.224 1.224 26 H -0.192 1.192 27 N -0.161 5.161 28 N -0.074 5.074 29 C -0.017 4.017 30 H 0.110 0.890 31 H 0.139 0.861 32 H 0.098 0.902 33 H 0.268 0.732 34 H 0.228 0.772 35 H 0.128 0.872 36 H 0.139 0.861 37 H 0.091 0.909 38 H 0.144 0.856 39 H 0.228 0.772 40 H 0.050 0.950 41 H 0.076 0.924 42 H 0.202 0.798 43 H 0.060 0.940 44 H 0.119 0.881 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.313 20.366 23.995 31.647 hybrid contribution -1.503 -0.227 -1.584 2.195 sum -4.816 20.139 22.411 30.513 Atomic orbital electron populations 1.22436 0.73933 1.06034 1.05262 1.45517 1.09276 1.05534 1.51028 1.26010 0.84933 0.94878 1.00419 1.70249 1.20393 1.12575 1.21663 1.23757 0.96133 0.91539 1.00963 1.20537 0.92442 0.88326 1.21580 1.16505 0.83968 0.83291 0.76137 1.90806 1.18158 1.84089 1.52610 1.47837 1.08868 1.05092 1.71732 1.23176 0.78158 0.98910 1.03109 1.23332 1.01893 0.91853 1.00601 1.22971 0.97475 0.82978 0.93564 0.82219 1.47410 1.21135 1.14923 1.23393 1.23495 0.99766 1.00823 0.93583 1.22206 0.98551 0.94958 1.01081 1.18969 0.92989 0.97044 0.80376 1.42491 1.27570 1.66954 1.01106 1.19688 1.05085 1.27836 0.84954 0.89847 1.25634 0.97962 1.01874 1.01427 1.69847 1.19250 1.46361 1.26791 0.85068 0.76860 0.78239 0.79141 1.21052 1.22402 1.19240 1.75049 1.11690 1.24453 1.04922 1.78158 1.18068 0.92933 1.18288 1.22141 0.95328 0.79679 1.04592 0.88981 0.86145 0.90156 0.73215 0.77206 0.87209 0.86071 0.90898 0.85595 0.77211 0.95042 0.92353 0.79767 0.94035 0.88122 0.90566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.61 10.74 127.77 1.37 1.99 16 2 N -0.43 -6.11 3.17 -539.81 -1.71 -7.82 16 3 C 0.22 2.57 12.52 180.33 2.26 4.82 16 4 N -0.53 -8.90 11.20 -199.57 -2.24 -11.13 16 5 C 0.03 0.45 10.21 84.10 0.86 1.31 16 6 C -0.11 -1.94 6.86 40.01 0.27 -1.66 16 7 C 0.61 12.02 7.81 86.47 0.68 12.69 16 8 O -0.58 -14.91 15.22 -4.27 -0.06 -14.97 16 9 N -0.60 -8.67 3.33 -816.38 -2.71 -11.38 16 10 C 0.09 0.68 5.28 86.86 0.46 1.14 16 11 C -0.14 -1.55 6.77 31.99 0.22 -1.33 16 12 C 0.13 1.86 4.01 46.19 0.18 2.05 16 13 H 0.16 1.46 8.14 -2.39 -0.02 1.44 16 14 N -0.27 -6.89 3.38 -321.51 -1.09 -7.97 16 15 C -0.03 -0.73 10.48 83.49 0.87 0.14 16 16 C -0.03 -1.13 6.61 41.59 0.28 -0.85 16 17 C 0.23 9.96 6.82 85.63 0.58 10.54 16 18 N -0.74 -39.32 5.59 -347.19 -1.94 -41.26 16 19 C -0.24 -13.89 9.99 84.03 0.84 -13.05 16 20 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 21 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 22 N -0.97 -61.03 13.06 21.65 0.28 -60.75 16 23 Si 0.98 46.71 29.55 68.60 2.03 48.74 16 24 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 25 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 26 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 27 N -0.29 -11.89 12.41 -48.60 -0.60 -12.50 16 28 N -0.10 -3.18 13.16 37.02 0.49 -2.69 16 29 C 0.11 1.56 6.47 86.73 0.56 2.12 16 30 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.08 1.22 6.42 -2.39 -0.02 1.20 16 33 H 0.25 0.54 8.06 -2.91 -0.02 0.51 16 34 H 0.21 1.82 4.73 -2.91 -0.01 1.81 16 35 H 0.11 0.77 5.31 -2.38 -0.01 0.76 16 36 H 0.12 0.23 8.04 -2.39 -0.02 0.21 16 37 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.21 4.93 6.84 -2.91 -0.02 4.91 16 40 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 42 H 0.37 21.52 7.66 -92.71 -0.71 20.81 16 43 H 0.25 15.22 8.31 -92.71 -0.77 14.44 16 44 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.08 1.36 5.83 -2.39 -0.01 1.34 16 Total: -1.00 -86.08 375.64 2.68 -83.39 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: 0.34 Total: 22.50 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: 9.90 Total: 15.86 kcal Atomic # 7 Polarization: -145.99 SS G_CDS: -9.52 Total: -155.51 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: -0.06 Total: -14.97 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.74 kcal Total: -86.08 2.68 -83.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098688610.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 230.751 kcal (2) G-P(sol) polarization free energy of solvation -86.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds