Wall clock time and date at job start Sat Apr 11 2020 07:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34228 * 116.99920 * 2 1 4 4 O 1.20830 * 119.99810 * 0.02562 * 3 2 1 5 5 C 1.50704 * 120.00269 * 179.97438 * 3 2 1 6 6 C 1.52997 * 109.47361 * 180.02562 * 5 3 2 7 7 N 1.46492 * 109.47151 * 180.02562 * 6 5 3 8 8 C 1.37098 * 120.00085 * 265.55750 * 7 6 5 9 9 H 1.08003 * 119.99780 * 145.67077 * 8 7 6 10 10 C 1.38949 * 119.99792 * 325.67186 * 8 7 6 11 11 N 1.31411 * 119.99943 * 338.41259 * 10 8 7 12 12 Si 1.86797 * 120.00015 * 158.41488 * 10 8 7 13 13 H 1.48503 * 109.47598 * 59.99580 * 12 10 8 14 14 H 1.48497 * 109.47431 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47085 * 299.99765 * 12 10 8 16 16 C 1.34778 * 120.00320 * 85.55786 * 7 6 5 17 17 O 1.21297 * 119.99780 * 359.97438 * 16 7 6 18 18 C 1.50702 * 120.00316 * 180.02562 * 16 7 6 19 19 C 1.50694 * 109.47137 * 179.97438 * 18 16 7 20 20 C 1.38238 * 120.00342 * 269.72919 * 19 18 16 21 21 C 1.38237 * 120.00053 * 179.78854 * 20 19 18 22 22 C 1.38233 * 119.99971 * 0.44057 * 21 20 19 23 23 C 1.50696 * 119.99864 * 179.83351 * 22 21 20 24 24 C 1.53783 * 113.61553 * 37.47270 * 23 22 21 25 25 C 1.53779 * 87.08343 * 220.01630 * 24 23 22 26 26 C 1.53784 * 113.61584 * 299.97763 * 23 22 21 27 27 C 1.38233 * 120.00184 * 359.80992 * 22 21 20 28 28 C 1.38237 * 120.00047 * 359.97438 * 27 22 21 29 29 H 1.09001 * 109.46713 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46984 * 299.99579 * 1 2 3 31 31 H 1.08995 * 109.47151 * 59.99711 * 1 2 3 32 32 H 1.08998 * 109.46820 * 60.00444 * 5 3 2 33 33 H 1.09003 * 109.46695 * 300.00722 * 5 3 2 34 34 H 1.08998 * 109.47233 * 60.00156 * 6 5 3 35 35 H 1.09006 * 109.46681 * 300.00031 * 6 5 3 36 36 H 0.97005 * 120.00053 * 180.02562 * 11 10 8 37 37 H 1.08999 * 109.47080 * 300.00005 * 18 16 7 38 38 H 1.08999 * 109.47024 * 59.99761 * 18 16 7 39 39 H 1.08004 * 119.99595 * 359.97438 * 20 19 18 40 40 H 1.07998 * 119.99705 * 180.26789 * 21 20 19 41 41 H 1.09006 * 112.84948 * 168.78193 * 23 22 21 42 42 H 1.08998 * 113.61433 * 334.56855 * 24 23 22 43 43 H 1.09001 * 113.61291 * 105.47274 * 24 23 22 44 44 H 1.08997 * 113.61683 * 270.88706 * 25 24 23 45 45 H 1.09001 * 113.61383 * 139.98012 * 25 24 23 46 46 H 1.09004 * 113.61220 * 254.53302 * 26 23 22 47 47 H 1.08995 * 113.61341 * 25.34451 * 26 23 22 48 48 H 1.08003 * 120.00408 * 180.02562 * 27 22 21 49 49 H 1.07997 * 120.00001 * 179.97438 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7421 0.0011 7 7 5.4630 2.8188 0.0011 8 6 6.1428 2.9461 1.1848 9 1 7.1077 2.4764 1.3066 10 6 5.5905 3.6795 2.2277 11 7 4.6671 4.5812 1.9801 12 14 6.1604 3.3837 3.9819 13 1 7.6164 3.6579 4.0823 14 1 5.4226 4.2870 4.9011 15 1 5.8957 1.9714 4.3569 16 6 6.1407 2.7643 -1.1627 17 8 5.5393 2.6512 -2.2100 18 6 7.6457 2.8426 -1.1627 19 6 8.1530 2.7590 -2.5792 20 6 8.4531 1.5292 -3.1345 21 6 8.9144 1.4523 -4.4354 22 6 9.0842 2.6058 -5.1779 23 6 9.5906 2.5222 -6.5948 24 6 9.0497 1.3103 -7.3717 25 6 10.4578 1.1666 -7.9729 26 6 10.9821 1.8786 -6.7147 27 6 8.7891 3.8360 -4.6209 28 6 8.3236 3.9127 -3.3215 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 3.9564 0.7807 -0.8892 33 1 3.9557 0.7809 0.8908 34 1 3.6101 3.2360 0.8911 35 1 3.6106 3.2364 -0.8890 36 1 4.2817 5.0934 2.7081 37 1 7.9604 3.7871 -0.7188 38 1 8.0526 2.0148 -0.5819 39 1 8.3243 0.6283 -2.5530 40 1 9.1447 0.4911 -4.8707 41 1 9.4977 3.4651 -7.1338 42 1 8.7604 0.4758 -6.7330 43 1 8.2859 1.5676 -8.1056 44 1 10.6016 1.7381 -8.8898 45 1 10.7917 0.1327 -8.0606 46 1 11.7783 2.5948 -6.9180 47 1 11.2217 1.2007 -5.8955 48 1 8.9213 4.7373 -5.2011 49 1 8.0934 4.8739 -2.8862 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121134430.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:31:55 Heat of formation + Delta-G solvation = -81.878584 kcal Electronic energy + Delta-G solvation = -29777.526679 eV Core-core repulsion = 25670.148104 eV Total energy + Delta-G solvation = -4107.378574 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.05971 -39.90958 -38.73430 -37.49676 -36.16001 -34.93073 -32.40751 -31.91106 -30.71845 -30.53906 -28.07726 -27.29002 -25.68702 -25.06671 -24.63647 -22.99904 -22.48587 -20.91148 -20.16945 -19.18736 -19.03274 -17.45349 -16.78741 -16.40631 -16.23880 -16.13331 -15.85123 -15.54943 -14.89718 -14.74853 -14.49244 -14.16439 -13.86009 -13.63087 -13.51299 -13.12491 -13.06299 -12.96512 -12.56239 -12.51005 -12.34902 -12.18492 -12.07568 -11.76209 -11.56140 -11.30502 -11.25191 -11.13422 -10.97815 -10.74361 -10.70589 -10.53718 -10.49358 -10.45076 -10.39118 -10.14918 -10.06267 -9.99062 -9.18846 -8.58030 -8.50380 -8.01014 -7.63751 -6.43482 -4.13721 1.72242 1.82093 2.67689 3.05326 3.08992 3.18490 3.19092 3.84634 4.02554 4.09731 4.54926 4.62181 4.64200 4.78896 4.93415 4.97878 5.16438 5.24167 5.25306 5.31040 5.31161 5.34966 5.43488 5.55456 5.58831 5.64206 5.67825 5.76331 5.82699 5.84072 5.87610 5.88869 5.93858 6.11469 6.14308 6.24141 6.30195 6.31660 6.36508 6.48996 6.54893 6.73827 6.80909 6.90486 6.94932 7.13118 7.29109 7.40357 7.45492 7.82057 8.18665 8.29267 9.00733 9.43569 9.86775 10.57515 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010213 B = 0.002771 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2740.851907 B =10101.785583 C =12140.414847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.367 6.367 3 C 0.466 3.534 4 O -0.505 6.505 5 C -0.124 4.124 6 C 0.127 3.873 7 N -0.440 5.440 8 C -0.349 4.349 9 H 0.093 0.907 10 C 0.044 3.956 11 N -0.851 5.851 12 Si 0.913 3.087 13 H -0.271 1.271 14 H -0.284 1.284 15 H -0.272 1.272 16 C 0.474 3.526 17 O -0.595 6.595 18 C -0.087 4.087 19 C -0.045 4.045 20 C -0.107 4.107 21 C -0.117 4.117 22 C -0.087 4.087 23 C -0.069 4.069 24 C -0.135 4.135 25 C -0.144 4.144 26 C -0.131 4.131 27 C -0.117 4.117 28 C -0.105 4.105 29 H 0.095 0.905 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.118 0.882 35 H 0.063 0.937 36 H 0.272 0.728 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.092 0.908 42 H 0.085 0.915 43 H 0.066 0.934 44 H 0.078 0.922 45 H 0.065 0.935 46 H 0.065 0.935 47 H 0.083 0.917 48 H 0.114 0.886 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.197 -7.213 -9.216 13.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.284 6.284 3 C 0.309 3.691 4 O -0.392 6.392 5 C -0.163 4.163 6 C 0.003 3.997 7 N -0.158 5.158 8 C -0.477 4.477 9 H 0.111 0.889 10 C -0.163 4.163 11 N -0.487 5.487 12 Si 0.739 3.261 13 H -0.196 1.196 14 H -0.209 1.209 15 H -0.197 1.197 16 C 0.263 3.737 17 O -0.480 6.480 18 C -0.126 4.126 19 C -0.046 4.046 20 C -0.125 4.125 21 C -0.135 4.135 22 C -0.087 4.087 23 C -0.087 4.087 24 C -0.173 4.173 25 C -0.182 4.182 26 C -0.169 4.169 27 C -0.135 4.135 28 C -0.123 4.123 29 H 0.114 0.886 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.116 0.884 33 H 0.121 0.879 34 H 0.136 0.864 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.115 0.885 38 H 0.106 0.894 39 H 0.134 0.866 40 H 0.133 0.867 41 H 0.110 0.890 42 H 0.104 0.896 43 H 0.085 0.915 44 H 0.096 0.904 45 H 0.084 0.916 46 H 0.084 0.916 47 H 0.101 0.899 48 H 0.132 0.868 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 5.531 -6.801 -9.604 13.003 hybrid contribution -0.132 0.003 1.111 1.119 sum 5.399 -6.799 -8.493 12.145 Atomic orbital electron populations 1.23163 0.77406 1.03005 1.02329 1.86540 1.22724 1.34453 1.84678 1.24092 0.92411 0.80877 0.71720 1.90651 1.67262 1.36222 1.45041 1.21910 0.85812 1.03508 1.05107 1.21188 0.82249 0.90801 1.05466 1.43416 1.04405 1.62926 1.05066 1.19410 1.05529 1.32736 0.89991 0.88922 1.25370 0.96878 0.93536 1.00484 1.69916 1.27161 1.18378 1.33235 0.86229 0.79078 0.78600 0.82206 1.19593 1.20890 1.19732 1.20303 0.88998 0.80680 0.83681 1.90569 1.70475 1.55301 1.31661 1.20469 0.94705 1.04568 0.92906 1.19593 0.96176 0.93102 0.95717 1.20933 0.99281 0.97107 0.95223 1.20800 1.01028 0.97477 0.94219 1.19546 1.00762 0.93346 0.95034 1.21458 0.96115 0.98478 0.92677 1.23042 0.96571 0.98348 0.99300 1.22842 0.97007 1.00716 0.97593 1.22985 0.96188 0.99604 0.98083 1.20900 1.00477 0.96781 0.95332 1.20991 0.98841 0.98237 0.94202 0.88638 0.92168 0.92194 0.88441 0.87869 0.86402 0.91897 0.91723 0.88520 0.89364 0.86569 0.86741 0.88950 0.89645 0.91525 0.90375 0.91585 0.91629 0.89888 0.86776 0.86375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.56 101.05 1.07 1.51 16 2 O -0.37 -6.09 10.57 -39.25 -0.41 -6.51 16 3 C 0.47 9.12 7.96 36.01 0.29 9.40 16 4 O -0.50 -11.17 15.73 -18.75 -0.30 -11.47 16 5 C -0.12 -2.50 6.11 -27.88 -0.17 -2.67 16 6 C 0.13 3.05 4.21 -4.05 -0.02 3.03 16 7 N -0.44 -10.60 2.55 -114.81 -0.29 -10.90 16 8 C -0.35 -8.33 8.70 -14.93 -0.13 -8.46 16 9 H 0.09 2.06 6.98 -52.48 -0.37 1.69 16 10 C 0.04 1.08 4.94 -17.47 -0.09 0.99 16 11 N -0.85 -22.15 11.31 55.50 0.63 -21.52 16 12 Si 0.91 18.67 29.60 -169.99 -5.03 13.63 16 13 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 14 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 15 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 16 C 0.47 11.08 7.60 -10.98 -0.08 11.00 16 17 O -0.59 -15.36 15.69 5.54 0.09 -15.27 16 18 C -0.09 -1.67 4.49 -29.04 -0.13 -1.80 16 19 C -0.05 -0.82 4.37 -104.62 -0.46 -1.27 16 20 C -0.11 -1.75 9.70 -39.58 -0.38 -2.13 16 21 C -0.12 -1.69 8.61 -39.58 -0.34 -2.03 16 22 C -0.09 -1.21 5.29 -104.63 -0.55 -1.77 16 23 C -0.07 -0.76 3.98 -90.96 -0.36 -1.12 16 24 C -0.14 -1.36 7.45 -25.92 -0.19 -1.55 16 25 C -0.14 -1.21 8.08 -25.92 -0.21 -1.42 16 26 C -0.13 -1.24 7.55 -25.92 -0.20 -1.43 16 27 C -0.12 -1.75 9.71 -39.58 -0.38 -2.14 16 28 C -0.10 -1.79 9.70 -39.58 -0.38 -2.17 16 29 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 31 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 32 H 0.10 1.93 8.14 -51.93 -0.42 1.51 16 33 H 0.10 1.95 8.14 -51.93 -0.42 1.53 16 34 H 0.12 3.07 5.30 -51.93 -0.28 2.80 16 35 H 0.06 1.63 7.52 -51.93 -0.39 1.24 16 36 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 37 H 0.10 1.84 8.04 -51.93 -0.42 1.42 16 38 H 0.09 1.54 7.59 -51.93 -0.39 1.15 16 39 H 0.12 1.74 8.06 -52.48 -0.42 1.32 16 40 H 0.11 1.39 6.66 -52.49 -0.35 1.04 16 41 H 0.09 0.95 8.09 -51.93 -0.42 0.53 16 42 H 0.09 0.89 6.31 -51.93 -0.33 0.56 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.08 0.81 7.72 -51.93 -0.40 0.41 16 48 H 0.11 1.45 8.05 -52.48 -0.42 1.03 16 49 H 0.12 1.95 8.06 -52.49 -0.42 1.53 16 LS Contribution 405.72 15.07 6.11 6.11 Total: -1.00 -30.18 405.72 -9.48 -39.67 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -7.55 Total: 10.28 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: -2.73 Total: -4.04 kcal Atomic # 7 Polarization: -32.75 SS G_CDS: 0.33 Total: -32.42 kcal Atomic # 8 Polarization: -32.62 SS G_CDS: -0.62 Total: -33.24 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.63 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -30.18 -9.48 -39.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121134430.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.210 kcal (2) G-P(sol) polarization free energy of solvation -30.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds