Wall clock time and date at job start Sat Apr 11 2020 07:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34228 * 116.99920 * 2 1 4 4 O 1.20830 * 119.99810 * 0.02562 * 3 2 1 5 5 C 1.50704 * 120.00269 * 179.97438 * 3 2 1 6 6 C 1.52997 * 109.47361 * 180.02562 * 5 3 2 7 7 N 1.46492 * 109.47151 * 180.02562 * 6 5 3 8 8 C 1.37098 * 120.00085 * 265.55750 * 7 6 5 9 9 H 1.08003 * 119.99780 * 145.67077 * 8 7 6 10 10 C 1.38949 * 119.99792 * 325.67186 * 8 7 6 11 11 N 1.31411 * 119.99943 * 338.41259 * 10 8 7 12 12 Si 1.86797 * 120.00015 * 158.41488 * 10 8 7 13 13 H 1.48503 * 109.47598 * 59.99580 * 12 10 8 14 14 H 1.48497 * 109.47431 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47085 * 299.99765 * 12 10 8 16 16 C 1.34778 * 120.00320 * 85.55786 * 7 6 5 17 17 O 1.21297 * 119.99780 * 359.97438 * 16 7 6 18 18 C 1.50702 * 120.00316 * 180.02562 * 16 7 6 19 19 C 1.50694 * 109.47137 * 179.97438 * 18 16 7 20 20 C 1.38238 * 120.00342 * 269.72919 * 19 18 16 21 21 C 1.38237 * 120.00053 * 179.78854 * 20 19 18 22 22 C 1.38233 * 119.99971 * 0.44057 * 21 20 19 23 23 C 1.50696 * 119.99864 * 179.83351 * 22 21 20 24 24 C 1.53783 * 113.61553 * 37.47270 * 23 22 21 25 25 C 1.53779 * 87.08343 * 220.01630 * 24 23 22 26 26 C 1.53784 * 113.61584 * 299.97763 * 23 22 21 27 27 C 1.38233 * 120.00184 * 359.80992 * 22 21 20 28 28 C 1.38237 * 120.00047 * 359.97438 * 27 22 21 29 29 H 1.09001 * 109.46713 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46984 * 299.99579 * 1 2 3 31 31 H 1.08995 * 109.47151 * 59.99711 * 1 2 3 32 32 H 1.08998 * 109.46820 * 60.00444 * 5 3 2 33 33 H 1.09003 * 109.46695 * 300.00722 * 5 3 2 34 34 H 1.08998 * 109.47233 * 60.00156 * 6 5 3 35 35 H 1.09006 * 109.46681 * 300.00031 * 6 5 3 36 36 H 0.97005 * 120.00053 * 180.02562 * 11 10 8 37 37 H 1.08999 * 109.47080 * 300.00005 * 18 16 7 38 38 H 1.08999 * 109.47024 * 59.99761 * 18 16 7 39 39 H 1.08004 * 119.99595 * 359.97438 * 20 19 18 40 40 H 1.07998 * 119.99705 * 180.26789 * 21 20 19 41 41 H 1.09006 * 112.84948 * 168.78193 * 23 22 21 42 42 H 1.08998 * 113.61433 * 334.56855 * 24 23 22 43 43 H 1.09001 * 113.61291 * 105.47274 * 24 23 22 44 44 H 1.08997 * 113.61683 * 270.88706 * 25 24 23 45 45 H 1.09001 * 113.61383 * 139.98012 * 25 24 23 46 46 H 1.09004 * 113.61220 * 254.53302 * 26 23 22 47 47 H 1.08995 * 113.61341 * 25.34451 * 26 23 22 48 48 H 1.08003 * 120.00408 * 180.02562 * 27 22 21 49 49 H 1.07997 * 120.00001 * 179.97438 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7421 0.0011 7 7 5.4630 2.8188 0.0011 8 6 6.1428 2.9461 1.1848 9 1 7.1077 2.4764 1.3066 10 6 5.5905 3.6795 2.2277 11 7 4.6671 4.5812 1.9801 12 14 6.1604 3.3837 3.9819 13 1 7.6164 3.6579 4.0823 14 1 5.4226 4.2870 4.9011 15 1 5.8957 1.9714 4.3569 16 6 6.1407 2.7643 -1.1627 17 8 5.5393 2.6512 -2.2100 18 6 7.6457 2.8426 -1.1627 19 6 8.1530 2.7590 -2.5792 20 6 8.4531 1.5292 -3.1345 21 6 8.9144 1.4523 -4.4354 22 6 9.0842 2.6058 -5.1779 23 6 9.5906 2.5222 -6.5948 24 6 9.0497 1.3103 -7.3717 25 6 10.4578 1.1666 -7.9729 26 6 10.9821 1.8786 -6.7147 27 6 8.7891 3.8360 -4.6209 28 6 8.3236 3.9127 -3.3215 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 3.9564 0.7807 -0.8892 33 1 3.9557 0.7809 0.8908 34 1 3.6101 3.2360 0.8911 35 1 3.6106 3.2364 -0.8890 36 1 4.2817 5.0934 2.7081 37 1 7.9604 3.7871 -0.7188 38 1 8.0526 2.0148 -0.5819 39 1 8.3243 0.6283 -2.5530 40 1 9.1447 0.4911 -4.8707 41 1 9.4977 3.4651 -7.1338 42 1 8.7604 0.4758 -6.7330 43 1 8.2859 1.5676 -8.1056 44 1 10.6016 1.7381 -8.8898 45 1 10.7917 0.1327 -8.0606 46 1 11.7783 2.5948 -6.9180 47 1 11.2217 1.2007 -5.8955 48 1 8.9213 4.7373 -5.2011 49 1 8.0934 4.8739 -2.8862 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121134430.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:31:54 Heat of formation + Delta-G solvation = -95.207643 kcal Electronic energy + Delta-G solvation = -29778.104670 eV Core-core repulsion = 25670.148104 eV Total energy + Delta-G solvation = -4107.956566 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.59654 -41.05529 -40.30593 -38.63694 -37.65539 -36.77855 -33.93909 -33.61996 -32.38017 -31.74702 -29.36516 -28.51770 -26.90882 -26.42843 -25.82822 -24.48735 -23.66345 -22.16754 -21.65354 -20.94542 -19.96221 -19.08542 -18.36939 -17.89330 -17.64364 -17.54316 -17.43133 -16.60921 -16.42174 -16.08346 -15.89581 -15.65611 -15.28983 -15.10472 -14.76407 -14.56794 -14.30374 -14.19758 -13.93195 -13.82381 -13.65926 -13.28493 -13.28073 -13.16119 -12.93968 -12.84827 -12.65729 -12.57412 -12.48417 -12.27040 -12.12306 -11.94587 -11.85955 -11.81022 -11.63063 -11.36361 -11.23387 -11.04288 -10.99562 -10.41757 -9.72307 -9.56130 -9.25793 -8.29519 -6.05772 0.49589 0.59865 1.10332 1.45608 1.51718 1.59961 1.64995 2.04066 2.34815 2.77897 3.05329 3.20066 3.76532 3.76859 3.82486 3.91594 4.01441 4.05596 4.09468 4.16952 4.21130 4.22717 4.29309 4.29776 4.31503 4.50971 4.55564 4.58464 4.66467 4.67983 4.78986 4.84670 4.86351 4.92356 4.96246 4.97568 5.13806 5.14512 5.22626 5.24080 5.24782 5.35612 5.39048 5.52089 5.56371 5.62509 5.83491 5.84428 5.95687 6.21524 6.40216 6.67435 7.12795 7.57503 8.00673 8.72501 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010213 B = 0.002771 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2740.851907 B =10101.785583 C =12140.414847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.362 6.362 3 C 0.473 3.527 4 O -0.537 6.537 5 C -0.113 4.113 6 C 0.133 3.867 7 N -0.449 5.449 8 C -0.357 4.357 9 H 0.111 0.889 10 C 0.001 3.999 11 N -0.892 5.892 12 Si 0.981 3.019 13 H -0.259 1.259 14 H -0.291 1.291 15 H -0.263 1.263 16 C 0.465 3.535 17 O -0.626 6.626 18 C -0.075 4.075 19 C -0.072 4.072 20 C -0.118 4.118 21 C -0.118 4.118 22 C -0.083 4.083 23 C -0.076 4.076 24 C -0.140 4.140 25 C -0.133 4.133 26 C -0.128 4.128 27 C -0.124 4.124 28 C -0.125 4.125 29 H 0.139 0.861 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.101 0.899 33 H 0.119 0.881 34 H 0.097 0.903 35 H 0.029 0.971 36 H 0.271 0.729 37 H 0.093 0.907 38 H 0.106 0.894 39 H 0.125 0.875 40 H 0.139 0.861 41 H 0.100 0.900 42 H 0.081 0.919 43 H 0.067 0.933 44 H 0.090 0.910 45 H 0.076 0.924 46 H 0.074 0.926 47 H 0.080 0.920 48 H 0.134 0.866 49 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.717 -9.318 -9.783 15.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.278 6.278 3 C 0.317 3.683 4 O -0.427 6.427 5 C -0.152 4.152 6 C 0.008 3.992 7 N -0.168 5.168 8 C -0.484 4.484 9 H 0.128 0.872 10 C -0.202 4.202 11 N -0.529 5.529 12 Si 0.805 3.195 13 H -0.183 1.183 14 H -0.217 1.217 15 H -0.187 1.187 16 C 0.255 3.745 17 O -0.513 6.513 18 C -0.114 4.114 19 C -0.072 4.072 20 C -0.136 4.136 21 C -0.135 4.135 22 C -0.083 4.083 23 C -0.095 4.095 24 C -0.177 4.177 25 C -0.170 4.170 26 C -0.165 4.165 27 C -0.142 4.142 28 C -0.143 4.143 29 H 0.157 0.843 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.119 0.881 33 H 0.137 0.863 34 H 0.115 0.885 35 H 0.047 0.953 36 H 0.080 0.920 37 H 0.111 0.889 38 H 0.124 0.876 39 H 0.143 0.857 40 H 0.157 0.843 41 H 0.119 0.881 42 H 0.099 0.901 43 H 0.086 0.914 44 H 0.108 0.892 45 H 0.095 0.905 46 H 0.093 0.907 47 H 0.098 0.902 48 H 0.152 0.848 49 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 7.066 -8.939 -10.171 15.274 hybrid contribution -0.672 0.648 1.177 1.502 sum 6.394 -8.291 -8.994 13.803 Atomic orbital electron populations 1.23587 0.74756 1.05916 1.02433 1.86507 1.25181 1.32299 1.83849 1.23848 0.92125 0.81298 0.71032 1.90642 1.67843 1.37510 1.46730 1.21661 0.86810 1.00785 1.05961 1.20931 0.82649 0.92965 1.02641 1.43654 1.04417 1.63001 1.05704 1.19842 1.06168 1.32586 0.89810 0.87172 1.26250 0.96801 0.92895 1.04266 1.70055 1.28895 1.19729 1.34253 0.85166 0.78955 0.78505 0.76905 1.18306 1.21692 1.18737 1.21034 0.90780 0.79724 0.82939 1.90530 1.71566 1.56567 1.32627 1.20365 0.91501 1.04964 0.94586 1.19588 0.98098 0.94227 0.95311 1.21134 0.99443 0.96770 0.96272 1.21095 1.00093 0.98844 0.93495 1.19955 0.99129 0.92716 0.96463 1.21614 0.97483 0.99539 0.90816 1.23074 0.97756 0.97574 0.99278 1.22808 0.95235 1.01462 0.97474 1.22971 0.95321 0.99658 0.98585 1.21181 1.00053 0.98307 0.94681 1.21113 0.99951 0.97879 0.95394 0.84295 0.92064 0.92225 0.88079 0.86308 0.88478 0.95283 0.91962 0.88905 0.87586 0.85678 0.84302 0.88137 0.90082 0.91391 0.89178 0.90542 0.90709 0.90177 0.84771 0.87102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.56 113.37 1.20 1.81 16 2 O -0.36 -11.61 10.57 -51.39 -0.54 -12.15 16 3 C 0.47 18.68 7.96 71.24 0.57 19.24 16 4 O -0.54 -24.50 15.73 21.95 0.35 -24.16 16 5 C -0.11 -4.64 6.11 29.85 0.18 -4.46 16 6 C 0.13 6.65 4.21 86.38 0.36 7.02 16 7 N -0.45 -22.30 2.55 -635.55 -1.62 -23.92 16 8 C -0.36 -17.13 8.70 84.04 0.73 -16.40 16 9 H 0.11 4.80 6.98 -2.91 -0.02 4.78 16 10 C 0.00 0.05 4.94 84.93 0.42 0.47 16 11 N -0.89 -47.91 11.31 21.66 0.24 -47.66 16 12 Si 0.98 38.00 29.60 68.60 2.03 40.03 16 13 H -0.26 -9.46 7.11 99.48 0.71 -8.76 16 14 H -0.29 -11.55 7.11 99.48 0.71 -10.84 16 15 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 16 C 0.46 22.37 7.60 87.66 0.67 23.04 16 17 O -0.63 -33.52 15.69 -3.08 -0.05 -33.57 16 18 C -0.07 -2.92 4.49 29.10 0.13 -2.79 16 19 C -0.07 -2.61 4.37 -19.87 -0.09 -2.70 16 20 C -0.12 -3.79 9.70 22.27 0.22 -3.58 16 21 C -0.12 -3.22 8.61 22.27 0.19 -3.03 16 22 C -0.08 -2.20 5.29 -19.87 -0.11 -2.30 16 23 C -0.08 -1.51 3.98 -11.01 -0.04 -1.55 16 24 C -0.14 -2.47 7.45 31.12 0.23 -2.23 16 25 C -0.13 -1.81 8.08 31.12 0.25 -1.56 16 26 C -0.13 -2.06 7.55 31.12 0.23 -1.82 16 27 C -0.12 -3.67 9.71 22.27 0.22 -3.45 16 28 C -0.13 -4.37 9.70 22.27 0.22 -4.16 16 29 H 0.14 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.06 1.45 8.13 -2.39 -0.02 1.43 16 31 H 0.06 1.42 8.13 -2.39 -0.02 1.40 16 32 H 0.10 4.06 8.14 -2.39 -0.02 4.04 16 33 H 0.12 4.46 8.14 -2.39 -0.02 4.44 16 34 H 0.10 5.32 5.30 -2.39 -0.01 5.30 16 35 H 0.03 1.60 7.52 -2.38 -0.02 1.58 16 36 H 0.27 13.88 8.31 -92.70 -0.77 13.11 16 37 H 0.09 3.63 8.04 -2.39 -0.02 3.62 16 38 H 0.11 3.66 7.59 -2.39 -0.02 3.65 16 39 H 0.13 3.66 8.06 -2.91 -0.02 3.64 16 40 H 0.14 3.06 6.66 -2.91 -0.02 3.04 16 41 H 0.10 1.83 8.09 -2.38 -0.02 1.81 16 42 H 0.08 1.50 6.31 -2.39 -0.02 1.48 16 43 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 47 H 0.08 1.35 7.72 -2.39 -0.02 1.33 16 48 H 0.13 3.29 8.05 -2.91 -0.02 3.26 16 49 H 0.11 3.87 8.06 -2.91 -0.02 3.85 16 Total: -1.00 -67.51 405.72 6.93 -60.58 By element: Atomic # 1 Polarization: 38.37 SS G_CDS: 0.94 Total: 39.31 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: 5.58 Total: 1.54 kcal Atomic # 7 Polarization: -70.21 SS G_CDS: -1.38 Total: -71.58 kcal Atomic # 8 Polarization: -69.63 SS G_CDS: -0.25 Total: -69.88 kcal Atomic # 14 Polarization: 38.00 SS G_CDS: 2.03 Total: 40.03 kcal Total: -67.51 6.93 -60.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121134430.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.631 kcal (2) G-P(sol) polarization free energy of solvation -67.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds