Wall clock time and date at job start Sat Apr 11 2020 07:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86796 * 119.99764 * 2 1 4 4 H 1.48501 * 109.47545 * 269.99946 * 3 2 1 5 5 H 1.48507 * 109.47237 * 30.00562 * 3 2 1 6 6 H 1.48502 * 109.46825 * 149.99924 * 3 2 1 7 7 C 1.38952 * 120.00016 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99564 * 179.97438 * 7 2 1 9 9 N 1.37099 * 119.99556 * 359.97438 * 7 2 1 10 10 C 1.34784 * 119.99261 * 180.02562 * 9 7 2 11 11 O 1.21288 * 120.00179 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99462 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.46766 * 180.02562 * 12 10 9 14 14 C 1.46904 * 111.00005 * 179.97438 * 13 12 10 15 15 C 1.52998 * 109.47265 * 179.97438 * 14 13 12 16 16 N 1.46502 * 109.47041 * 179.97438 * 15 14 13 17 17 C 1.34776 * 119.99896 * 180.02562 * 16 15 14 18 18 O 1.21278 * 119.99759 * 359.97438 * 17 16 15 19 19 C 1.50700 * 119.99933 * 179.97438 * 17 16 15 20 20 C 1.50703 * 109.46848 * 179.97438 * 19 17 16 21 21 C 1.38256 * 120.02603 * 90.00626 * 20 19 17 22 22 C 1.38105 * 119.93154 * 180.02562 * 21 20 19 23 23 C 1.38497 * 120.21438 * 359.97035 * 22 21 20 24 24 C 1.38216 * 119.85394 * 0.02955 * 23 22 21 25 25 C 1.38096 * 120.03705 * 269.99829 * 20 19 17 26 26 C 1.51362 * 109.76055 * 180.02562 * 24 23 22 27 27 C 1.54347 * 105.17257 * 342.81694 * 26 24 23 28 28 C 1.51680 * 130.30808 * 179.85164 * 23 22 21 29 29 H 0.97002 * 120.00008 * 359.97438 * 1 2 3 30 30 H 0.96994 * 120.00492 * 359.97438 * 9 7 2 31 31 H 1.08999 * 109.47461 * 59.99555 * 12 10 9 32 32 H 1.09003 * 109.47057 * 299.99424 * 12 10 9 33 33 H 1.00902 * 110.99980 * 303.94821 * 13 12 10 34 34 H 1.09000 * 109.46943 * 59.99391 * 14 13 12 35 35 H 1.09006 * 109.47016 * 299.99735 * 14 13 12 36 36 H 1.09004 * 109.46882 * 59.99867 * 15 14 13 37 37 H 1.08995 * 109.46706 * 299.99980 * 15 14 13 38 38 H 0.97003 * 119.99724 * 359.97438 * 16 15 14 39 39 H 1.08997 * 109.46589 * 60.00083 * 19 17 16 40 40 H 1.08999 * 109.47003 * 299.99643 * 19 17 16 41 41 H 1.08002 * 120.03364 * 359.97438 * 21 20 19 42 42 H 1.08004 * 119.89275 * 179.97438 * 22 21 20 43 43 H 1.08005 * 119.89126 * 0.02901 * 25 20 19 44 44 H 1.09002 * 110.30308 * 223.88922 * 26 24 23 45 45 H 1.09003 * 110.38787 * 101.77978 * 26 24 23 46 46 H 1.09002 * 110.82432 * 144.56982 * 27 26 24 47 47 H 1.09005 * 110.82182 * 267.92439 * 27 26 24 48 48 H 1.08998 * 110.25544 * 78.26854 * 28 23 22 49 49 H 1.09000 * 110.49386 * 316.01666 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4455 2.6527 0.7002 6 1 3.5456 1.4402 0.7001 7 6 2.0089 -1.2034 -0.0005 8 1 3.0888 -1.2033 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0010 12 6 1.2437 -4.8629 -0.0011 13 7 2.1984 -5.9795 -0.0004 14 6 1.4981 -7.2708 -0.0003 15 6 2.5230 -8.4068 -0.0002 16 7 1.8245 -9.6946 0.0005 17 6 2.5293 -10.8434 0.0013 18 8 3.7417 -10.8110 0.0009 19 6 1.8109 -12.1682 0.0025 20 6 2.8205 -13.2871 0.0026 21 6 3.2846 -13.8001 1.1996 22 6 4.2102 -14.8251 1.1973 23 6 4.6750 -15.3418 -0.0007 24 6 4.2110 -14.8289 -1.1973 25 6 3.2827 -13.8010 -1.1929 26 6 4.8644 -15.5556 -2.3532 27 6 6.0941 -16.2614 -1.7433 28 6 5.6775 -16.4479 -0.2690 29 1 -0.4850 0.8401 0.0004 30 1 0.3534 -2.3906 0.0002 31 1 0.6173 -4.9205 -0.8913 32 1 0.6168 -4.9209 0.8887 33 1 2.8338 -5.9124 -0.7813 34 1 0.8735 -7.3455 -0.8905 35 1 0.8728 -7.3450 0.8895 36 1 3.1478 -8.3323 0.8899 37 1 3.1478 -8.3324 -0.8901 38 1 0.8549 -9.7205 0.0012 39 1 1.1858 -12.2432 -0.8872 40 1 1.1863 -12.2419 0.8928 41 1 2.9244 -13.3991 2.1355 42 1 4.5727 -15.2251 2.1328 43 1 2.9199 -13.3995 -2.1276 44 1 5.1770 -14.8451 -3.1185 45 1 4.1787 -16.2894 -2.7768 46 1 6.2650 -17.2253 -2.2227 47 1 6.9799 -15.6306 -1.8186 48 1 5.2104 -17.4227 -0.1287 49 1 6.5435 -16.3450 0.3849 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150765843.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:32:24 Heat of formation + Delta-G solvation = -59.198986 kcal Electronic energy + Delta-G solvation = -27660.488127 eV Core-core repulsion = 23586.385765 eV Total energy + Delta-G solvation = -4074.102362 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.62353 -39.63772 -38.32989 -36.57805 -36.02134 -34.35019 -33.74824 -32.42027 -31.25747 -30.99684 -29.43222 -28.10939 -26.83412 -25.69706 -23.88582 -22.88672 -22.15556 -21.17749 -21.14670 -20.09131 -19.28624 -17.92391 -17.31985 -16.62328 -16.41834 -16.10055 -16.03389 -15.85400 -15.52233 -15.14768 -14.86933 -14.57709 -14.27888 -13.98547 -13.84528 -13.52984 -13.44737 -13.37963 -13.23932 -13.11949 -12.77713 -12.54864 -12.20037 -11.97665 -11.91281 -11.58912 -11.53603 -11.52880 -11.45120 -11.41556 -11.21929 -11.03813 -11.01727 -10.39629 -10.22873 -10.09232 -9.52058 -9.24611 -8.99889 -8.65701 -8.51402 -8.13957 -7.97510 -6.42875 -3.83664 1.03996 1.16591 2.46258 2.88073 3.17567 3.26407 3.32744 3.50796 3.88955 4.02387 4.12214 4.20435 4.37046 4.39081 4.61498 4.63869 4.65535 4.72891 4.86087 4.91030 4.98650 5.03620 5.12620 5.17143 5.20286 5.25332 5.29418 5.29917 5.37758 5.42202 5.45190 5.54433 5.71347 5.76673 5.79468 5.83880 5.89986 5.91744 5.93995 6.14244 6.19082 6.25862 6.30564 6.37995 6.74505 7.08785 7.28216 7.54491 7.55870 8.04256 8.05077 8.59877 9.16827 9.52657 10.04076 10.74841 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.031818 B = 0.001260 C = 0.001241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.783596 B =22217.545494 C =22550.616467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.440 3.560 11 O -0.582 6.582 12 C 0.053 3.947 13 N -0.666 5.666 14 C 0.050 3.950 15 C 0.120 3.880 16 N -0.731 5.731 17 C 0.512 3.488 18 O -0.527 6.527 19 C -0.100 4.100 20 C -0.065 4.065 21 C -0.104 4.104 22 C -0.106 4.106 23 C -0.100 4.100 24 C -0.098 4.098 25 C -0.091 4.091 26 C -0.082 4.082 27 C -0.121 4.121 28 C -0.082 4.082 29 H 0.271 0.729 30 H 0.392 0.608 31 H 0.045 0.955 32 H 0.087 0.913 33 H 0.352 0.648 34 H 0.032 0.968 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.400 0.600 39 H 0.102 0.898 40 H 0.104 0.896 41 H 0.122 0.878 42 H 0.119 0.881 43 H 0.117 0.883 44 H 0.074 0.926 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.072 0.928 48 H 0.078 0.922 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.282 -34.199 -2.023 34.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.225 3.775 11 O -0.466 6.466 12 C -0.080 4.080 13 N -0.299 5.299 14 C -0.080 4.080 15 C -0.004 4.004 16 N -0.384 5.384 17 C 0.297 3.703 18 O -0.402 6.402 19 C -0.140 4.140 20 C -0.066 4.066 21 C -0.122 4.122 22 C -0.124 4.124 23 C -0.100 4.100 24 C -0.098 4.098 25 C -0.110 4.110 26 C -0.119 4.119 27 C -0.159 4.159 28 C -0.119 4.119 29 H 0.081 0.919 30 H 0.225 0.775 31 H 0.063 0.937 32 H 0.105 0.895 33 H 0.172 0.828 34 H 0.050 0.950 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.233 0.767 39 H 0.121 0.879 40 H 0.122 0.878 41 H 0.140 0.860 42 H 0.137 0.863 43 H 0.135 0.865 44 H 0.093 0.907 45 H 0.097 0.903 46 H 0.094 0.906 47 H 0.091 0.909 48 H 0.096 0.904 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.396 -33.972 -1.343 34.027 hybrid contribution -1.209 1.017 -0.833 1.786 sum 0.187 -32.955 -2.177 33.028 Atomic orbital electron populations 1.69612 1.05950 1.28173 1.50610 1.25259 0.95632 0.99725 0.97263 0.85853 0.79280 0.80755 0.78384 1.20416 1.20907 1.19370 1.19719 0.93416 0.82224 1.47597 0.87882 1.41852 1.09183 1.04579 1.64348 1.19781 0.88400 0.84703 0.84633 1.90535 1.13731 1.87016 1.55307 1.21669 0.94216 0.90813 1.01313 1.59931 1.18829 0.99473 1.51674 1.22079 0.95553 0.89424 1.00965 1.21274 0.94950 0.80747 1.03399 1.45934 1.10300 1.05922 1.76240 1.20517 0.88110 0.85255 0.76385 1.90763 1.13851 1.87478 1.48123 1.20654 0.97592 0.90463 1.05326 1.19094 0.98056 0.96093 0.93349 1.20855 0.97404 0.96530 0.97395 1.20554 0.97702 0.97124 0.97025 1.20649 0.98282 0.97684 0.93366 1.20500 0.97195 0.96450 0.95618 1.20397 0.97129 0.96012 0.97416 1.21040 0.96422 0.98520 0.95942 1.22293 0.97843 1.00804 0.94942 1.21099 0.97193 0.96641 0.96949 0.91871 0.77459 0.93718 0.89471 0.82798 0.94956 0.90474 0.90238 0.91421 0.76660 0.87937 0.87803 0.85997 0.86267 0.86476 0.90700 0.90320 0.90598 0.90886 0.90357 0.90710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.43 13.05 55.50 0.72 -23.70 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 21.05 29.55 -169.99 -5.02 16.03 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 7 C -0.30 -8.38 9.68 -14.93 -0.14 -8.53 16 8 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 9 N -0.56 -14.21 5.29 -10.96 -0.06 -14.27 16 10 C 0.44 10.35 7.82 -10.98 -0.09 10.27 16 11 O -0.58 -15.92 15.78 5.55 0.09 -15.83 16 12 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16 13 N -0.67 -10.52 6.13 -115.05 -0.70 -11.22 16 14 C 0.05 0.56 5.80 -3.82 -0.02 0.54 16 15 C 0.12 1.37 5.93 -4.04 -0.02 1.34 16 16 N -0.73 -6.44 5.56 -60.29 -0.33 -6.77 16 17 C 0.51 5.42 7.82 -10.99 -0.09 5.34 16 18 O -0.53 -8.17 16.03 5.56 0.09 -8.08 16 19 C -0.10 -0.71 5.83 -29.03 -0.17 -0.87 16 20 C -0.07 -0.62 4.37 -104.67 -0.46 -1.07 16 21 C -0.10 -0.97 9.70 -39.62 -0.38 -1.35 16 22 C -0.11 -0.97 10.04 -39.53 -0.40 -1.36 16 23 C -0.10 -0.91 6.15 -104.05 -0.64 -1.55 16 24 C -0.10 -0.91 6.14 -104.21 -0.64 -1.55 16 25 C -0.09 -0.88 9.69 -39.54 -0.38 -1.26 16 26 C -0.08 -0.57 6.77 -26.85 -0.18 -0.75 16 27 C -0.12 -0.72 7.07 -25.32 -0.18 -0.90 16 28 C -0.08 -0.54 6.80 -26.70 -0.18 -0.72 16 29 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 30 H 0.39 9.39 7.90 -40.82 -0.32 9.07 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.35 5.80 8.43 -39.29 -0.33 5.47 16 34 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.40 2.19 8.47 -40.82 -0.35 1.85 16 39 H 0.10 0.48 8.08 -51.93 -0.42 0.06 16 40 H 0.10 0.49 8.09 -51.93 -0.42 0.07 16 41 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 42 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 43 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 44 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 49 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 412.31 15.07 6.21 6.21 Total: -1.00 -35.42 412.31 -10.80 -46.22 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: -7.69 Total: 12.47 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: -4.10 Total: -1.06 kcal Atomic # 7 Polarization: -55.59 SS G_CDS: -0.37 Total: -55.96 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: 0.18 Total: -23.91 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -35.42 -10.80 -46.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150765843.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.976 kcal (2) G-P(sol) polarization free energy of solvation -35.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds