Wall clock time and date at job start Sat Apr 11 2020 07:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86796 * 119.99764 * 2 1 4 4 H 1.48501 * 109.47545 * 269.99946 * 3 2 1 5 5 H 1.48507 * 109.47237 * 30.00562 * 3 2 1 6 6 H 1.48502 * 109.46825 * 149.99924 * 3 2 1 7 7 C 1.38952 * 120.00016 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99564 * 179.97438 * 7 2 1 9 9 N 1.37099 * 119.99556 * 359.97438 * 7 2 1 10 10 C 1.34784 * 119.99261 * 180.02562 * 9 7 2 11 11 O 1.21288 * 120.00179 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99462 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.46766 * 180.02562 * 12 10 9 14 14 C 1.46904 * 111.00005 * 179.97438 * 13 12 10 15 15 C 1.52998 * 109.47265 * 179.97438 * 14 13 12 16 16 N 1.46502 * 109.47041 * 179.97438 * 15 14 13 17 17 C 1.34776 * 119.99896 * 180.02562 * 16 15 14 18 18 O 1.21278 * 119.99759 * 359.97438 * 17 16 15 19 19 C 1.50700 * 119.99933 * 179.97438 * 17 16 15 20 20 C 1.50703 * 109.46848 * 179.97438 * 19 17 16 21 21 C 1.38256 * 120.02603 * 90.00626 * 20 19 17 22 22 C 1.38105 * 119.93154 * 180.02562 * 21 20 19 23 23 C 1.38497 * 120.21438 * 359.97035 * 22 21 20 24 24 C 1.38216 * 119.85394 * 0.02955 * 23 22 21 25 25 C 1.38096 * 120.03705 * 269.99829 * 20 19 17 26 26 C 1.51362 * 109.76055 * 180.02562 * 24 23 22 27 27 C 1.54347 * 105.17257 * 342.81694 * 26 24 23 28 28 C 1.51680 * 130.30808 * 179.85164 * 23 22 21 29 29 H 0.97002 * 120.00008 * 359.97438 * 1 2 3 30 30 H 0.96994 * 120.00492 * 359.97438 * 9 7 2 31 31 H 1.08999 * 109.47461 * 59.99555 * 12 10 9 32 32 H 1.09003 * 109.47057 * 299.99424 * 12 10 9 33 33 H 1.00902 * 110.99980 * 303.94821 * 13 12 10 34 34 H 1.09000 * 109.46943 * 59.99391 * 14 13 12 35 35 H 1.09006 * 109.47016 * 299.99735 * 14 13 12 36 36 H 1.09004 * 109.46882 * 59.99867 * 15 14 13 37 37 H 1.08995 * 109.46706 * 299.99980 * 15 14 13 38 38 H 0.97003 * 119.99724 * 359.97438 * 16 15 14 39 39 H 1.08997 * 109.46589 * 60.00083 * 19 17 16 40 40 H 1.08999 * 109.47003 * 299.99643 * 19 17 16 41 41 H 1.08002 * 120.03364 * 359.97438 * 21 20 19 42 42 H 1.08004 * 119.89275 * 179.97438 * 22 21 20 43 43 H 1.08005 * 119.89126 * 0.02901 * 25 20 19 44 44 H 1.09002 * 110.30308 * 223.88922 * 26 24 23 45 45 H 1.09003 * 110.38787 * 101.77978 * 26 24 23 46 46 H 1.09002 * 110.82432 * 144.56982 * 27 26 24 47 47 H 1.09005 * 110.82182 * 267.92439 * 27 26 24 48 48 H 1.08998 * 110.25544 * 78.26854 * 28 23 22 49 49 H 1.09000 * 110.49386 * 316.01666 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4455 2.6527 0.7002 6 1 3.5456 1.4402 0.7001 7 6 2.0089 -1.2034 -0.0005 8 1 3.0888 -1.2033 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0010 12 6 1.2437 -4.8629 -0.0011 13 7 2.1984 -5.9795 -0.0004 14 6 1.4981 -7.2708 -0.0003 15 6 2.5230 -8.4068 -0.0002 16 7 1.8245 -9.6946 0.0005 17 6 2.5293 -10.8434 0.0013 18 8 3.7417 -10.8110 0.0009 19 6 1.8109 -12.1682 0.0025 20 6 2.8205 -13.2871 0.0026 21 6 3.2846 -13.8001 1.1996 22 6 4.2102 -14.8251 1.1973 23 6 4.6750 -15.3418 -0.0007 24 6 4.2110 -14.8289 -1.1973 25 6 3.2827 -13.8010 -1.1929 26 6 4.8644 -15.5556 -2.3532 27 6 6.0941 -16.2614 -1.7433 28 6 5.6775 -16.4479 -0.2690 29 1 -0.4850 0.8401 0.0004 30 1 0.3534 -2.3906 0.0002 31 1 0.6173 -4.9205 -0.8913 32 1 0.6168 -4.9209 0.8887 33 1 2.8338 -5.9124 -0.7813 34 1 0.8735 -7.3455 -0.8905 35 1 0.8728 -7.3450 0.8895 36 1 3.1478 -8.3323 0.8899 37 1 3.1478 -8.3324 -0.8901 38 1 0.8549 -9.7205 0.0012 39 1 1.1858 -12.2432 -0.8872 40 1 1.1863 -12.2419 0.8928 41 1 2.9244 -13.3991 2.1355 42 1 4.5727 -15.2251 2.1328 43 1 2.9199 -13.3995 -2.1276 44 1 5.1770 -14.8451 -3.1185 45 1 4.1787 -16.2894 -2.7768 46 1 6.2650 -17.2253 -2.2227 47 1 6.9799 -15.6306 -1.8186 48 1 5.2104 -17.4227 -0.1287 49 1 6.5435 -16.3450 0.3849 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150765843.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:32:23 Heat of formation + Delta-G solvation = -84.558788 kcal Electronic energy + Delta-G solvation = -27661.587810 eV Core-core repulsion = 23586.385765 eV Total energy + Delta-G solvation = -4075.202046 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.29863 -40.43772 -40.13392 -37.56380 -36.79887 -35.98756 -35.17884 -33.27973 -33.05435 -31.67481 -30.46810 -28.76017 -27.87804 -26.93790 -25.44395 -23.54369 -23.10068 -21.96155 -21.68333 -21.09955 -20.78217 -19.92125 -18.24968 -17.61929 -17.35404 -17.27934 -16.90783 -16.72562 -16.51526 -16.26800 -15.91956 -15.90039 -15.56991 -15.29378 -15.02923 -14.79613 -14.37721 -14.13662 -14.05720 -13.89636 -13.70693 -13.52516 -13.41178 -13.30742 -12.96581 -12.86065 -12.58835 -12.48422 -12.42536 -12.37313 -12.13926 -12.12236 -12.05467 -11.75749 -11.59965 -11.51305 -10.99772 -10.37061 -10.12459 -10.01798 -9.66542 -9.38354 -9.29164 -8.47221 -5.95818 0.38005 0.49493 1.37849 1.42050 1.54559 1.65749 2.04577 2.07101 2.30710 2.81180 3.07433 3.20289 3.46184 3.56457 3.66297 3.76408 3.87336 4.08665 4.10698 4.13892 4.16052 4.16722 4.31749 4.33389 4.46544 4.50807 4.53214 4.58291 4.61942 4.63843 4.74204 4.80755 4.89647 4.92496 4.93213 4.96473 5.06325 5.23189 5.29108 5.33099 5.39083 5.41041 5.50805 5.64774 5.72975 5.84826 6.07160 6.12180 6.31574 6.57721 6.60144 7.12510 7.29180 7.55877 8.11716 8.70057 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.031818 B = 0.001260 C = 0.001241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.783596 B =22217.545494 C =22550.616467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.010 4.010 3 Si 0.991 3.009 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.275 1.275 7 C -0.337 4.337 8 H 0.077 0.923 9 N -0.571 5.571 10 C 0.434 3.566 11 O -0.626 6.626 12 C 0.069 3.931 13 N -0.688 5.688 14 C 0.060 3.940 15 C 0.128 3.872 16 N -0.714 5.714 17 C 0.510 3.490 18 O -0.584 6.584 19 C -0.091 4.091 20 C -0.079 4.079 21 C -0.120 4.120 22 C -0.121 4.121 23 C -0.117 4.117 24 C -0.117 4.117 25 C -0.110 4.110 26 C -0.083 4.083 27 C -0.119 4.119 28 C -0.081 4.081 29 H 0.278 0.722 30 H 0.398 0.602 31 H 0.073 0.927 32 H 0.110 0.890 33 H 0.345 0.655 34 H 0.058 0.942 35 H 0.095 0.905 36 H 0.054 0.946 37 H 0.052 0.948 38 H 0.420 0.580 39 H 0.131 0.869 40 H 0.133 0.867 41 H 0.134 0.866 42 H 0.132 0.868 43 H 0.125 0.875 44 H 0.073 0.927 45 H 0.092 0.908 46 H 0.097 0.903 47 H 0.066 0.934 48 H 0.091 0.909 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.123 -35.240 -2.249 35.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.210 4.210 3 Si 0.815 3.185 4 H -0.196 1.196 5 H -0.194 1.194 6 H -0.200 1.200 7 C -0.466 4.466 8 H 0.095 0.905 9 N -0.209 5.209 10 C 0.222 3.778 11 O -0.513 6.513 12 C -0.064 4.064 13 N -0.321 5.321 14 C -0.070 4.070 15 C 0.003 3.997 16 N -0.368 5.368 17 C 0.297 3.703 18 O -0.463 6.463 19 C -0.130 4.130 20 C -0.080 4.080 21 C -0.138 4.138 22 C -0.139 4.139 23 C -0.117 4.117 24 C -0.117 4.117 25 C -0.128 4.128 26 C -0.120 4.120 27 C -0.157 4.157 28 C -0.118 4.118 29 H 0.087 0.913 30 H 0.232 0.768 31 H 0.091 0.909 32 H 0.128 0.872 33 H 0.164 0.836 34 H 0.076 0.924 35 H 0.113 0.887 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.257 0.743 39 H 0.149 0.851 40 H 0.151 0.849 41 H 0.151 0.849 42 H 0.150 0.850 43 H 0.143 0.857 44 H 0.091 0.909 45 H 0.110 0.890 46 H 0.115 0.885 47 H 0.085 0.915 48 H 0.110 0.890 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.532 -35.032 -1.568 35.071 hybrid contribution -0.627 1.284 -0.753 1.615 sum -1.159 -33.748 -2.321 33.847 Atomic orbital electron populations 1.69662 1.06747 1.29318 1.50211 1.25999 0.96532 1.02283 0.96185 0.84953 0.77881 0.76992 0.78661 1.19597 1.19423 1.19977 1.19666 0.92701 0.84152 1.50095 0.90494 1.41907 1.09355 1.04624 1.64969 1.20960 0.88274 0.86341 0.82258 1.90504 1.16071 1.87997 1.56707 1.21524 0.93719 0.87479 1.03632 1.59902 1.19393 1.00973 1.51801 1.22074 0.95209 0.86731 1.02942 1.21005 0.94991 0.82209 1.01479 1.45742 1.11255 1.04592 1.75194 1.21179 0.87561 0.86583 0.74942 1.90745 1.16469 1.88277 1.50818 1.20705 0.97066 0.87178 1.08076 1.19405 0.98645 0.96681 0.93259 1.21143 0.97729 0.96843 0.98082 1.20851 0.97873 0.97352 0.97816 1.21051 0.98826 0.98451 0.93386 1.20913 0.97328 0.96674 0.96745 1.20674 0.97644 0.96491 0.98022 1.21110 0.96945 0.98672 0.95248 1.22324 0.97090 1.01645 0.94592 1.21165 0.96796 0.96419 0.97429 0.91253 0.76825 0.90872 0.87246 0.83649 0.92382 0.88718 0.92788 0.92997 0.74255 0.85102 0.84892 0.84859 0.84966 0.85723 0.90851 0.89006 0.88486 0.91471 0.89038 0.90365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.07 13.05 21.66 0.28 -48.78 16 2 C -0.01 -0.53 5.50 84.93 0.47 -0.07 16 3 Si 0.99 42.92 29.55 68.60 2.03 44.95 16 4 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 5 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 7 C -0.34 -19.16 9.68 84.04 0.81 -18.35 16 8 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 9 N -0.57 -29.05 5.29 -306.98 -1.62 -30.67 16 10 C 0.43 20.52 7.82 87.66 0.69 21.20 16 11 O -0.63 -35.14 15.78 -3.05 -0.05 -35.19 16 12 C 0.07 2.22 6.17 85.56 0.53 2.75 16 13 N -0.69 -20.87 6.13 -517.91 -3.17 -24.05 16 14 C 0.06 1.18 5.80 86.30 0.50 1.68 16 15 C 0.13 2.81 5.93 86.38 0.51 3.32 16 16 N -0.71 -11.19 5.56 -463.06 -2.57 -13.77 16 17 C 0.51 10.28 7.82 87.66 0.69 10.96 16 18 O -0.58 -18.50 16.03 -3.02 -0.05 -18.54 16 19 C -0.09 -1.09 5.83 29.10 0.17 -0.92 16 20 C -0.08 -1.44 4.37 -19.89 -0.09 -1.53 16 21 C -0.12 -2.21 9.70 22.24 0.22 -2.00 16 22 C -0.12 -2.21 10.04 22.30 0.22 -1.99 16 23 C -0.12 -2.13 6.15 -19.49 -0.12 -2.25 16 24 C -0.12 -2.18 6.14 -19.60 -0.12 -2.30 16 25 C -0.11 -2.10 9.69 22.30 0.22 -1.89 16 26 C -0.08 -1.10 6.77 30.52 0.21 -0.89 16 27 C -0.12 -1.29 7.07 31.51 0.22 -1.07 16 28 C -0.08 -1.01 6.80 30.61 0.21 -0.80 16 29 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 30 H 0.40 18.95 7.90 -92.71 -0.73 18.22 16 31 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 33 H 0.34 11.30 8.43 -89.69 -0.76 10.55 16 34 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 36 H 0.05 1.47 8.14 -2.39 -0.02 1.46 16 37 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.42 3.18 8.47 -92.71 -0.79 2.39 16 39 H 0.13 0.83 8.08 -2.39 -0.02 0.81 16 40 H 0.13 0.82 8.09 -2.39 -0.02 0.80 16 41 H 0.13 1.98 8.06 -2.91 -0.02 1.95 16 42 H 0.13 1.88 8.06 -2.91 -0.02 1.86 16 43 H 0.12 2.02 8.06 -2.91 -0.02 1.99 16 44 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 46 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 47 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 48 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 49 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -79.75 412.31 -1.11 -80.87 By element: Atomic # 1 Polarization: 40.61 SS G_CDS: -1.29 Total: 39.32 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: 5.33 Total: 5.87 kcal Atomic # 7 Polarization: -110.19 SS G_CDS: -7.09 Total: -117.27 kcal Atomic # 8 Polarization: -53.64 SS G_CDS: -0.10 Total: -53.73 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -79.75 -1.11 -80.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150765843.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.692 kcal (2) G-P(sol) polarization free energy of solvation -79.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds