Wall clock time and date at job start Sat Apr 11 2020 07:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 119.99387 * 2 1 4 4 H 1.48504 * 109.47102 * 274.45210 * 3 2 1 5 5 H 1.48491 * 109.47454 * 34.45557 * 3 2 1 6 6 H 1.48503 * 109.46775 * 154.45988 * 3 2 1 7 7 C 1.38806 * 120.00362 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99978 * 164.49317 * 7 2 1 9 9 N 1.36939 * 120.00107 * 344.49485 * 7 2 1 10 10 C 1.47006 * 121.37129 * 335.97611 * 9 7 2 11 11 C 1.50326 * 109.16494 * 222.96379 * 10 9 7 12 12 C 1.29451 * 123.65093 * 349.03319 * 11 10 9 13 13 C 1.50704 * 117.69466 * 180.85514 * 12 11 10 14 14 C 1.52993 * 109.47211 * 94.99320 * 13 12 11 15 15 N 1.46502 * 109.46911 * 179.97438 * 14 13 12 16 16 C 1.34781 * 120.00001 * 180.02562 * 15 14 13 17 17 O 1.21698 * 119.99565 * 359.97438 * 16 15 14 18 18 C 1.46671 * 120.00014 * 180.02562 * 16 15 14 19 19 C 1.38166 * 126.19009 * 180.02562 * 18 16 15 20 20 C 1.38943 * 106.94821 * 179.97438 * 19 18 16 21 21 C 1.36274 * 108.02164 * 0.05309 * 20 19 18 22 22 N 1.34742 * 108.84009 * 359.90830 * 21 20 19 23 23 H 0.97003 * 125.71262 * 180.02562 * 22 21 20 24 24 C 1.51088 * 122.57750 * 179.87714 * 21 20 19 25 25 C 1.53541 * 107.71826 * 344.07318 * 24 21 20 26 26 O 1.43149 * 109.68944 * 48.07580 * 25 24 21 27 27 C 1.43420 * 114.25415 * 288.96630 * 26 25 24 28 28 C 1.49967 * 124.61180 * 1.12796 * 12 11 10 29 29 C 1.47339 * 121.37693 * 155.99554 * 9 7 2 30 30 H 0.97000 * 120.00275 * 359.97438 * 1 2 3 31 31 H 1.09005 * 109.51904 * 103.06702 * 10 9 7 32 32 H 1.08995 * 109.52688 * 342.87418 * 10 9 7 33 33 H 1.07998 * 118.17233 * 169.00108 * 11 10 9 34 34 H 1.08997 * 109.46748 * 334.99346 * 13 12 11 35 35 H 1.08998 * 109.46850 * 214.99941 * 13 12 11 36 36 H 1.09010 * 109.47115 * 60.00472 * 14 13 12 37 37 H 1.08998 * 109.47720 * 300.00088 * 14 13 12 38 38 H 0.96992 * 119.99871 * 359.97438 * 15 14 13 39 39 H 1.07993 * 126.52292 * 359.97438 * 19 18 16 40 40 H 1.08996 * 109.81106 * 103.63124 * 24 21 20 41 41 H 1.09001 * 109.80904 * 224.45971 * 24 21 20 42 42 H 1.09004 * 109.43441 * 168.10447 * 25 24 21 43 43 H 1.08994 * 109.43820 * 287.97385 * 25 24 21 44 44 H 1.09008 * 109.76063 * 291.08519 * 27 26 25 45 45 H 1.08993 * 109.76009 * 170.36800 * 27 26 25 46 46 H 1.08997 * 109.31799 * 101.01577 * 28 12 11 47 47 H 1.09005 * 109.31835 * 220.44049 * 28 12 11 48 48 H 1.08996 * 109.77749 * 237.79065 * 29 9 7 49 49 H 1.09003 * 109.77500 * 358.60071 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 2.4034 2.1009 -1.3959 5 1 1.4977 2.6237 0.7921 6 1 3.5916 1.4150 0.6037 7 6 2.0103 -1.2021 -0.0005 8 1 3.0608 -1.2189 -0.2506 9 7 1.3631 -2.3666 0.3160 10 6 0.1448 -2.3658 1.1388 11 6 0.2253 -3.4836 2.1407 12 6 1.1211 -4.4173 2.1033 13 6 1.0650 -5.4848 3.1656 14 6 0.2882 -6.6915 2.6355 15 7 0.2342 -7.7294 3.6681 16 6 -0.4036 -8.8912 3.4231 17 8 -0.9350 -9.0778 2.3443 18 6 -0.4582 -9.9301 4.4571 19 6 -1.0734 -11.1620 4.3441 20 6 -0.8815 -11.8228 5.5512 21 6 -0.1665 -11.0027 6.3717 22 7 0.0960 -9.8542 5.7178 23 1 0.5910 -9.1000 6.0744 24 6 0.2257 -11.3981 7.7762 25 6 -0.6371 -12.6020 8.1809 26 8 -0.6203 -13.5803 7.1360 27 6 -1.3463 -13.1983 5.9596 28 6 2.2144 -4.5085 1.0808 29 6 1.8591 -3.6720 -0.1537 30 1 -0.4850 0.8400 0.0004 31 1 -0.7263 -2.5115 0.4999 32 1 0.0590 -1.4134 1.6617 33 1 -0.5046 -3.5087 2.9363 34 1 0.5649 -5.0908 4.0504 35 1 2.0780 -5.7909 3.4269 36 1 0.7884 -7.0855 1.7507 37 1 -0.7248 -6.3854 2.3742 38 1 0.6581 -7.5807 4.5277 39 1 -1.6027 -11.5394 3.4818 40 1 1.2799 -11.6738 7.8017 41 1 0.0448 -10.5670 8.4580 42 1 -0.2394 -13.0421 9.0954 43 1 -1.6616 -12.2725 8.3534 44 1 -2.4144 -13.1772 6.1763 45 1 -1.1471 -13.9081 5.1569 46 1 3.1448 -4.1414 1.5139 47 1 2.3443 -5.5492 0.7836 48 1 1.0847 -4.1739 -0.7337 49 1 2.7475 -3.5293 -0.7689 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160330744.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:32:32 Heat of formation + Delta-G solvation = -3.708947 kcal Electronic energy + Delta-G solvation = -28888.941549 eV Core-core repulsion = 24817.245416 eV Total energy + Delta-G solvation = -4071.696133 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.07620 -39.59962 -38.33326 -37.87186 -35.52987 -33.66462 -32.92835 -32.06392 -31.34497 -29.93328 -29.50896 -28.63675 -26.14936 -25.08286 -24.13831 -23.12739 -22.60844 -22.03390 -21.00719 -20.42536 -19.47457 -18.79990 -17.62566 -16.82336 -16.37584 -16.29642 -15.98360 -15.57701 -15.54715 -15.04620 -14.81038 -14.71650 -14.26490 -14.03897 -13.96687 -13.82234 -13.59582 -13.48723 -13.30671 -12.94340 -12.67244 -12.54944 -12.23937 -12.05263 -11.88106 -11.61344 -11.45365 -11.38902 -11.05903 -10.92900 -10.73219 -10.42891 -10.32153 -10.29901 -10.17859 -9.82218 -9.57082 -9.32923 -9.23191 -8.66527 -8.37870 -7.95236 -6.73058 -5.79349 -3.17981 1.09516 2.16958 2.51183 2.74331 3.06527 3.14366 3.36880 3.38878 3.43802 3.46038 4.09855 4.32641 4.48582 4.49136 4.62164 4.65336 4.76974 4.97535 5.04295 5.04871 5.09794 5.13375 5.21802 5.30860 5.38966 5.39887 5.52119 5.56901 5.60768 5.72965 5.74927 5.95321 5.98776 6.11372 6.17158 6.21397 6.30229 6.37469 6.45933 6.53794 6.67953 6.77583 6.89022 6.89832 7.21128 7.24343 7.31686 7.39103 7.74333 7.86324 7.95694 8.38619 9.20099 9.83041 10.41685 11.31083 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.033513 B = 0.001572 C = 0.001547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.307978 B =17803.243100 C =18095.889090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.002 4.002 3 Si 0.904 3.096 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.245 4.245 8 H 0.068 0.932 9 N -0.595 5.595 10 C 0.196 3.804 11 C -0.145 4.145 12 C -0.144 4.144 13 C -0.091 4.091 14 C 0.125 3.875 15 N -0.731 5.731 16 C 0.587 3.413 17 O -0.525 6.525 18 C -0.055 4.055 19 C -0.085 4.085 20 C -0.221 4.221 21 C 0.055 3.945 22 N -0.525 5.525 23 H 0.416 0.584 24 C -0.088 4.088 25 C 0.068 3.932 26 O -0.380 6.380 27 C 0.136 3.864 28 C -0.091 4.091 29 C 0.143 3.857 30 H 0.253 0.747 31 H 0.039 0.961 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.391 0.609 39 H 0.152 0.848 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.102 0.898 43 H 0.058 0.942 44 H 0.063 0.937 45 H 0.104 0.896 46 H 0.062 0.938 47 H 0.052 0.948 48 H 0.025 0.975 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.681 -24.590 18.676 30.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.200 4.200 3 Si 0.734 3.266 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.375 4.375 8 H 0.086 0.914 9 N -0.319 5.319 10 C 0.071 3.929 11 C -0.164 4.164 12 C -0.144 4.144 13 C -0.129 4.129 14 C 0.002 3.998 15 N -0.382 5.382 16 C 0.374 3.626 17 O -0.401 6.401 18 C -0.167 4.167 19 C -0.112 4.112 20 C -0.228 4.228 21 C -0.065 4.065 22 N -0.120 5.120 23 H 0.253 0.747 24 C -0.126 4.126 25 C -0.009 4.009 26 O -0.298 6.298 27 C 0.059 3.941 28 C -0.130 4.130 29 C 0.016 3.984 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.224 0.776 39 H 0.169 0.831 40 H 0.108 0.892 41 H 0.105 0.895 42 H 0.121 0.879 43 H 0.076 0.924 44 H 0.081 0.919 45 H 0.122 0.878 46 H 0.081 0.919 47 H 0.071 0.929 48 H 0.043 0.957 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.993 -24.548 17.873 30.382 hybrid contribution 0.742 1.786 0.628 2.034 sum -0.251 -22.762 18.501 29.333 Atomic orbital electron populations 1.70018 1.05172 1.25433 1.54841 1.24988 0.95384 0.98269 1.01339 0.86251 0.79065 0.83698 0.77600 1.21480 1.21599 1.20532 1.19183 0.92212 0.84387 1.41691 0.91414 1.44133 1.29280 1.01158 1.57295 1.19711 0.88693 0.94719 0.89774 1.23131 0.96570 0.97360 0.99362 1.20209 0.99444 0.96546 0.98247 1.20910 0.99870 0.94173 0.97951 1.21498 1.01538 0.86417 0.90315 1.45999 1.56984 1.16790 1.18396 1.17004 0.78715 0.80740 0.86152 1.90876 1.45991 1.79287 1.23929 1.20543 1.10383 0.99262 0.86552 1.20848 1.00607 0.91846 0.97861 1.19947 1.08283 0.98900 0.95629 1.20258 1.03033 0.87136 0.96051 1.41614 1.43189 1.15186 1.11974 0.74670 1.21038 1.01967 0.99465 0.90114 1.22568 0.99067 0.88527 0.90767 1.88067 1.74724 1.41799 1.25221 1.21061 0.94684 0.91259 0.87094 1.20793 0.96500 0.99033 0.96678 1.20995 0.97362 0.87227 0.92812 0.93644 0.94356 0.89132 0.89105 0.91619 0.91531 0.90921 0.90930 0.77572 0.83056 0.89176 0.89469 0.87945 0.92397 0.91893 0.87823 0.91935 0.92910 0.95740 0.92534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.38 11.08 55.49 0.61 -25.77 16 2 C 0.00 -0.06 5.01 -17.43 -0.09 -0.14 16 3 Si 0.90 21.72 29.58 -169.99 -5.03 16.69 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.25 -6.77 9.71 -15.06 -0.15 -6.91 16 8 H 0.07 1.83 7.88 -52.49 -0.41 1.41 16 9 N -0.60 -15.08 3.01 -173.56 -0.52 -15.60 16 10 C 0.20 4.72 5.23 -5.10 -0.03 4.69 16 11 C -0.14 -2.77 9.47 -35.78 -0.34 -3.11 16 12 C -0.14 -2.44 5.11 -100.99 -0.52 -2.95 16 13 C -0.09 -1.14 5.32 -27.88 -0.15 -1.29 16 14 C 0.12 1.59 5.66 -4.04 -0.02 1.56 16 15 N -0.73 -7.67 5.55 -61.62 -0.34 -8.01 16 16 C 0.59 7.49 7.79 -12.85 -0.10 7.39 16 17 O -0.52 -8.84 16.88 5.19 0.09 -8.75 16 18 C -0.06 -0.58 7.07 -81.75 -0.58 -1.16 16 19 C -0.09 -0.90 10.63 -39.35 -0.42 -1.32 16 20 C -0.22 -1.98 6.02 -105.01 -0.63 -2.61 16 21 C 0.05 0.42 7.14 -81.83 -0.58 -0.17 16 22 N -0.52 -3.87 5.97 -5.43 -0.03 -3.90 16 23 H 0.42 1.81 8.19 -40.82 -0.33 1.47 16 24 C -0.09 -0.41 6.56 -27.41 -0.18 -0.59 16 25 C 0.07 0.34 6.78 37.44 0.25 0.59 16 26 O -0.38 -2.97 10.76 -35.23 -0.38 -3.35 16 27 C 0.14 0.98 7.25 36.07 0.26 1.24 16 28 C -0.09 -1.60 5.95 -28.09 -0.17 -1.76 16 29 C 0.14 3.02 6.59 -3.43 -0.02 2.99 16 30 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.09 2.41 6.41 -51.93 -0.33 2.08 16 33 H 0.09 1.54 7.73 -52.49 -0.41 1.13 16 34 H 0.07 0.75 7.78 -51.93 -0.40 0.35 16 35 H 0.07 0.75 8.11 -51.93 -0.42 0.32 16 36 H 0.07 1.01 8.11 -51.92 -0.42 0.59 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.39 2.81 7.60 -40.82 -0.31 2.50 16 39 H 0.15 1.53 8.06 -52.49 -0.42 1.10 16 40 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 42 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 43 H 0.06 0.25 8.09 -51.93 -0.42 -0.17 16 44 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 45 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 47 H 0.05 0.80 8.10 -51.93 -0.42 0.38 16 48 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.06 1.16 7.96 -51.93 -0.41 0.74 16 LS Contribution 397.03 15.07 5.98 5.98 Total: -1.00 -34.30 397.03 -10.73 -45.04 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -7.66 Total: 1.20 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -3.45 Total: -3.54 kcal Atomic # 7 Polarization: -53.00 SS G_CDS: -0.28 Total: -53.28 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: -0.29 Total: -12.10 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.69 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.30 -10.73 -45.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160330744.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.326 kcal (2) G-P(sol) polarization free energy of solvation -34.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds