Wall clock time and date at job start Sat Apr 11 2020 07:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 119.99754 * 2 1 4 4 H 1.48503 * 109.47010 * 239.99246 * 3 2 1 5 5 H 1.48498 * 109.47278 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47460 * 119.99637 * 3 2 1 7 7 C 1.38816 * 120.00348 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00429 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99644 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99819 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47161 * 174.36709 * 10 9 7 12 12 C 1.53004 * 115.55230 * 294.95580 * 11 10 9 13 13 C 1.53005 * 109.46715 * 279.32253 * 12 11 10 14 14 N 1.46491 * 109.46941 * 175.45807 * 13 12 11 15 15 C 1.34781 * 120.00111 * 180.02562 * 14 13 12 16 16 O 1.21588 * 119.99833 * 359.97438 * 15 14 13 17 17 C 1.47518 * 120.00228 * 179.97438 * 15 14 13 18 18 C 1.39916 * 120.69645 * 0.02562 * 17 15 14 19 19 C 1.38438 * 118.54832 * 179.97438 * 18 17 15 20 20 C 1.38404 * 119.62640 * 359.97438 * 19 18 17 21 21 N 1.32359 * 120.60043 * 359.97438 * 20 19 18 22 22 C 1.32035 * 122.18742 * 0.02562 * 21 20 19 23 23 O 1.35425 * 119.78162 * 180.02562 * 22 21 20 24 24 C 1.51551 * 109.52045 * 179.97438 * 20 19 18 25 25 C 1.54577 * 105.24972 * 17.27146 * 24 20 19 26 26 C 1.51284 * 130.45842 * 179.97438 * 19 18 17 27 27 C 1.52999 * 117.51593 * 80.65165 * 11 10 9 28 28 C 1.52997 * 117.49739 * 149.28035 * 11 10 9 29 29 H 0.96995 * 120.00318 * 0.02562 * 1 2 3 30 30 H 0.97001 * 120.00542 * 359.97438 * 9 7 2 31 31 H 1.09000 * 109.46930 * 54.37234 * 10 9 7 32 32 H 1.08992 * 109.47215 * 294.36695 * 10 9 7 33 33 H 1.08998 * 109.47018 * 159.32527 * 12 11 10 34 34 H 1.08991 * 109.46930 * 39.32129 * 12 11 10 35 35 H 1.09002 * 109.46978 * 55.45375 * 13 12 11 36 36 H 1.09001 * 109.47093 * 295.45554 * 13 12 11 37 37 H 0.96998 * 120.00295 * 359.97438 * 14 13 12 38 38 H 1.08005 * 120.72588 * 359.96283 * 18 17 15 39 39 H 0.96708 * 113.99569 * 269.96778 * 23 22 21 40 40 H 1.08999 * 110.29441 * 136.20274 * 24 20 19 41 41 H 1.09003 * 110.29069 * 258.22539 * 24 20 19 42 42 H 1.08997 * 110.90301 * 215.34080 * 25 24 20 43 43 H 1.08995 * 110.84088 * 91.72394 * 25 24 20 44 44 H 1.08995 * 110.30718 * 281.74254 * 26 19 18 45 45 H 1.09005 * 110.30907 * 43.81246 * 26 19 18 46 46 H 1.09001 * 117.49933 * 214.97335 * 27 11 10 47 47 H 1.09008 * 117.50085 * 359.97438 * 27 11 10 48 48 H 1.09002 * 117.50106 * 359.97438 * 28 11 10 49 49 H 1.09002 * 117.49752 * 145.00381 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2851 2.7464 -0.0006 6 1 3.1038 1.6966 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 1.0700 -4.8162 0.1421 12 6 0.3083 -4.8760 1.4677 13 6 1.1963 -5.5142 2.5378 14 7 0.5090 -5.4732 3.8308 15 6 1.1052 -5.9819 4.9274 16 8 2.2133 -6.4751 4.8433 17 6 0.4133 -5.9401 6.2296 18 6 -0.8623 -5.3764 6.3429 19 6 -1.4708 -5.3611 7.5863 20 6 -0.8108 -5.8987 8.6776 21 7 0.3953 -6.4268 8.5426 22 6 1.0195 -6.4666 7.3798 23 8 2.2531 -7.0193 7.2972 24 6 -1.6787 -5.7612 9.9124 25 6 -3.1034 -5.4863 9.3794 26 6 -2.8215 -4.8288 8.0117 27 6 0.3325 -5.2742 -1.1177 28 6 1.4400 -6.1447 -0.5206 29 1 -0.4850 0.8400 -0.0004 30 1 0.3556 -2.3881 0.0005 31 1 2.7583 -3.6721 0.8359 32 1 2.6070 -3.7594 -0.9355 33 1 -0.5946 -5.4734 1.3413 34 1 0.0360 -3.8667 1.7761 35 1 2.1344 -4.9635 2.6073 36 1 1.4023 -6.5502 2.2685 37 1 -0.3749 -5.0794 3.8980 38 1 -1.3612 -4.9621 5.4792 39 1 2.9753 -6.3924 7.4412 40 1 -1.6633 -6.6853 10.4901 41 1 -1.3353 -4.9275 10.5249 42 1 -3.6387 -4.8004 10.0359 43 1 -3.6572 -6.4169 9.2552 44 1 -2.7858 -3.7442 8.1129 45 1 -3.5859 -5.1159 7.2895 46 1 -0.6954 -5.6181 -1.0021 47 1 0.5508 -4.7492 -2.0477 48 1 2.3872 -6.1925 -1.0578 49 1 1.1408 -7.0613 -0.0122 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168154938.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:32:40 Heat of formation + Delta-G solvation = -10.441260 kcal Electronic energy + Delta-G solvation = -29463.509223 eV Core-core repulsion = 25391.521154 eV Total energy + Delta-G solvation = -4071.988069 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.38108 -39.52813 -38.37094 -37.89602 -35.54227 -34.83543 -33.93337 -33.26458 -30.79381 -30.21477 -29.03023 -28.14641 -25.99230 -24.33934 -23.83995 -22.79804 -22.55733 -21.74671 -21.27904 -20.58535 -18.86014 -18.56781 -17.53977 -17.34282 -17.02661 -16.24968 -15.91437 -15.69923 -15.50184 -14.94671 -14.59898 -14.46703 -14.36666 -14.08199 -13.48109 -13.42375 -13.34752 -13.13938 -13.07796 -12.92075 -12.68793 -12.38008 -12.25206 -11.91514 -11.81951 -11.68333 -11.48442 -11.34405 -11.13979 -10.97946 -10.83696 -10.62750 -10.24157 -10.16071 -10.14415 -9.92413 -9.68993 -9.53906 -9.33092 -9.10530 -8.87855 -8.84498 -6.91566 -5.77532 -3.05238 0.27272 0.76190 2.66487 2.92411 3.18585 3.43197 3.44394 3.47564 3.48480 3.90913 3.98599 4.04959 4.34622 4.39539 4.53428 4.60328 4.68389 4.72906 4.99128 5.00316 5.08721 5.14557 5.20433 5.21890 5.29526 5.30618 5.41892 5.45008 5.50291 5.53901 5.57869 5.65844 5.68491 5.73026 5.76133 5.91020 6.05346 6.14100 6.17307 6.21705 6.40099 6.42450 6.45458 6.54068 6.75188 6.83602 7.27337 7.42098 7.56784 7.69198 8.14081 8.41779 9.53357 10.11626 10.47557 11.45283 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009716 B = 0.002458 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2881.228040 B =11387.592883 C =12696.549273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.237 4.237 8 H 0.069 0.931 9 N -0.727 5.727 10 C 0.187 3.813 11 C -0.119 4.119 12 C -0.091 4.091 13 C 0.126 3.874 14 N -0.722 5.722 15 C 0.562 3.438 16 O -0.520 6.520 17 C -0.201 4.201 18 C -0.017 4.017 19 C -0.169 4.169 20 C 0.166 3.834 21 N -0.506 5.506 22 C 0.375 3.625 23 O -0.459 6.459 24 C -0.075 4.075 25 C -0.118 4.118 26 C -0.078 4.078 27 C -0.164 4.164 28 C -0.177 4.177 29 H 0.255 0.745 30 H 0.385 0.615 31 H 0.027 0.973 32 H 0.017 0.983 33 H 0.062 0.938 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.398 0.602 38 H 0.143 0.857 39 H 0.406 0.594 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.086 0.914 43 H 0.077 0.923 44 H 0.088 0.912 45 H 0.082 0.918 46 H 0.088 0.912 47 H 0.096 0.904 48 H 0.092 0.908 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.740 -13.790 16.765 23.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.369 4.369 8 H 0.087 0.913 9 N -0.371 5.371 10 C 0.060 3.940 11 C -0.120 4.120 12 C -0.129 4.129 13 C 0.003 3.997 14 N -0.374 5.374 15 C 0.348 3.652 16 O -0.396 6.396 17 C -0.208 4.208 18 C -0.043 4.043 19 C -0.171 4.171 20 C 0.027 3.973 21 N -0.225 5.225 22 C 0.194 3.806 23 O -0.266 6.266 24 C -0.112 4.112 25 C -0.156 4.156 26 C -0.115 4.115 27 C -0.202 4.202 28 C -0.215 4.215 29 H 0.065 0.935 30 H 0.218 0.782 31 H 0.045 0.955 32 H 0.035 0.965 33 H 0.081 0.919 34 H 0.106 0.894 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.233 0.767 38 H 0.161 0.839 39 H 0.266 0.734 40 H 0.107 0.893 41 H 0.113 0.887 42 H 0.105 0.895 43 H 0.096 0.904 44 H 0.106 0.894 45 H 0.101 0.899 46 H 0.107 0.893 47 H 0.114 0.886 48 H 0.111 0.889 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.587 -14.898 17.244 23.721 hybrid contribution -0.271 1.879 -0.750 2.041 sum -6.858 -13.019 16.494 22.104 Atomic orbital electron populations 1.69644 1.05052 1.25663 1.57954 1.24706 0.95512 0.97578 1.03157 0.86286 0.78538 0.83612 0.77872 1.21305 1.21712 1.21315 1.19193 0.91002 0.84190 1.42483 0.91330 1.42282 1.05873 0.99631 1.89345 1.20186 0.91915 0.84182 0.97743 1.21553 1.01750 0.96050 0.92650 1.21259 0.96855 1.02255 0.92537 1.21401 0.96452 1.01180 0.80644 1.45939 1.21409 1.61386 1.08657 1.17719 0.85644 0.78727 0.83130 1.90819 1.18963 1.44309 1.85554 1.21042 0.97560 1.06264 0.95960 1.21199 0.92270 0.93453 0.97390 1.21397 0.99232 1.02616 0.93836 1.21867 0.88673 0.90485 0.96246 1.66371 1.10834 1.18087 1.27160 1.18866 0.87642 0.88031 0.86038 1.84722 1.12016 1.37494 1.92385 1.21166 0.92515 1.03808 0.93740 1.22374 0.95599 1.01608 0.96039 1.20979 0.92417 1.00860 0.97279 1.22966 0.96446 1.03090 0.97653 1.22979 1.00065 0.94042 1.04407 0.93549 0.78174 0.95543 0.96524 0.91941 0.89430 0.90725 0.91524 0.76731 0.83944 0.73427 0.89272 0.88654 0.89531 0.90397 0.89387 0.89906 0.89337 0.88583 0.88908 0.89237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.70 13.06 55.49 0.72 -26.98 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.31 29.55 -169.99 -5.02 17.28 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.73 -17.96 5.30 -59.91 -0.32 -18.28 16 10 C 0.19 3.74 6.10 -4.04 -0.02 3.72 16 11 C -0.12 -1.87 1.52 -154.51 -0.23 -2.10 16 12 C -0.09 -1.29 5.24 -26.73 -0.14 -1.43 16 13 C 0.13 1.75 5.51 -4.04 -0.02 1.73 16 14 N -0.72 -9.07 5.51 -61.36 -0.34 -9.41 16 15 C 0.56 8.04 7.77 -12.48 -0.10 7.94 16 16 O -0.52 -9.07 15.20 -16.43 -0.25 -9.32 16 17 C -0.20 -2.51 5.90 -104.72 -0.62 -3.13 16 18 C -0.02 -0.17 9.64 -38.88 -0.37 -0.54 16 19 C -0.17 -1.50 6.14 -104.20 -0.64 -2.14 16 20 C 0.17 1.65 7.32 -81.89 -0.60 1.06 16 21 N -0.51 -6.38 10.36 -8.88 -0.09 -6.47 16 22 C 0.37 4.97 7.77 -16.70 -0.13 4.84 16 23 O -0.46 -6.09 11.67 -39.69 -0.46 -6.55 16 24 C -0.07 -0.46 6.78 -26.64 -0.18 -0.65 16 25 C -0.12 -0.52 7.10 -25.20 -0.18 -0.70 16 26 C -0.08 -0.44 6.76 -26.89 -0.18 -0.62 16 27 C -0.16 -2.38 9.90 -26.73 -0.26 -2.64 16 28 C -0.18 -2.35 9.57 -26.73 -0.26 -2.60 16 29 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.38 9.92 7.46 -40.82 -0.30 9.61 16 31 H 0.03 0.55 7.69 -51.93 -0.40 0.15 16 32 H 0.02 0.35 8.09 -51.93 -0.42 -0.07 16 33 H 0.06 0.76 7.94 -51.93 -0.41 0.35 16 34 H 0.09 1.43 7.64 -51.93 -0.40 1.04 16 35 H 0.07 1.20 7.69 -51.93 -0.40 0.80 16 36 H 0.07 0.92 7.80 -51.93 -0.41 0.51 16 37 H 0.40 4.00 6.58 -40.82 -0.27 3.73 16 38 H 0.14 1.03 6.52 -52.48 -0.34 0.69 16 39 H 0.41 3.77 9.06 45.56 0.41 4.18 16 40 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 43 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.09 1.15 8.08 -51.93 -0.42 0.73 16 47 H 0.10 1.50 8.14 -51.92 -0.42 1.08 16 48 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 49 H 0.09 1.05 7.98 -51.93 -0.41 0.64 16 LS Contribution 404.26 15.07 6.09 6.09 Total: -1.00 -34.98 404.26 -10.55 -45.53 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: -6.70 Total: 12.59 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: -4.19 Total: -4.49 kcal Atomic # 7 Polarization: -61.12 SS G_CDS: -0.02 Total: -61.14 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: -0.71 Total: -15.87 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.98 -10.55 -45.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168154938.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.093 kcal (2) G-P(sol) polarization free energy of solvation -34.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds