Wall clock time and date at job start Sat Apr 11 2020 07:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 119.99754 * 2 1 4 4 H 1.48503 * 109.47010 * 239.99246 * 3 2 1 5 5 H 1.48498 * 109.47278 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47460 * 119.99637 * 3 2 1 7 7 C 1.38816 * 120.00348 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00429 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99644 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99819 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47161 * 174.36709 * 10 9 7 12 12 C 1.53004 * 115.55230 * 294.95580 * 11 10 9 13 13 C 1.53005 * 109.46715 * 279.32253 * 12 11 10 14 14 N 1.46491 * 109.46941 * 175.45807 * 13 12 11 15 15 C 1.34781 * 120.00111 * 180.02562 * 14 13 12 16 16 O 1.21588 * 119.99833 * 359.97438 * 15 14 13 17 17 C 1.47518 * 120.00228 * 179.97438 * 15 14 13 18 18 C 1.39916 * 120.69645 * 0.02562 * 17 15 14 19 19 C 1.38438 * 118.54832 * 179.97438 * 18 17 15 20 20 C 1.38404 * 119.62640 * 359.97438 * 19 18 17 21 21 N 1.32359 * 120.60043 * 359.97438 * 20 19 18 22 22 C 1.32035 * 122.18742 * 0.02562 * 21 20 19 23 23 O 1.35425 * 119.78162 * 180.02562 * 22 21 20 24 24 C 1.51551 * 109.52045 * 179.97438 * 20 19 18 25 25 C 1.54577 * 105.24972 * 17.27146 * 24 20 19 26 26 C 1.51284 * 130.45842 * 179.97438 * 19 18 17 27 27 C 1.52999 * 117.51593 * 80.65165 * 11 10 9 28 28 C 1.52997 * 117.49739 * 149.28035 * 11 10 9 29 29 H 0.96995 * 120.00318 * 0.02562 * 1 2 3 30 30 H 0.97001 * 120.00542 * 359.97438 * 9 7 2 31 31 H 1.09000 * 109.46930 * 54.37234 * 10 9 7 32 32 H 1.08992 * 109.47215 * 294.36695 * 10 9 7 33 33 H 1.08998 * 109.47018 * 159.32527 * 12 11 10 34 34 H 1.08991 * 109.46930 * 39.32129 * 12 11 10 35 35 H 1.09002 * 109.46978 * 55.45375 * 13 12 11 36 36 H 1.09001 * 109.47093 * 295.45554 * 13 12 11 37 37 H 0.96998 * 120.00295 * 359.97438 * 14 13 12 38 38 H 1.08005 * 120.72588 * 359.96283 * 18 17 15 39 39 H 0.96708 * 113.99569 * 269.96778 * 23 22 21 40 40 H 1.08999 * 110.29441 * 136.20274 * 24 20 19 41 41 H 1.09003 * 110.29069 * 258.22539 * 24 20 19 42 42 H 1.08997 * 110.90301 * 215.34080 * 25 24 20 43 43 H 1.08995 * 110.84088 * 91.72394 * 25 24 20 44 44 H 1.08995 * 110.30718 * 281.74254 * 26 19 18 45 45 H 1.09005 * 110.30907 * 43.81246 * 26 19 18 46 46 H 1.09001 * 117.49933 * 214.97335 * 27 11 10 47 47 H 1.09008 * 117.50085 * 359.97438 * 27 11 10 48 48 H 1.09002 * 117.50106 * 359.97438 * 28 11 10 49 49 H 1.09002 * 117.49752 * 145.00381 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2851 2.7464 -0.0006 6 1 3.1038 1.6966 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 1.0700 -4.8162 0.1421 12 6 0.3083 -4.8760 1.4677 13 6 1.1963 -5.5142 2.5378 14 7 0.5090 -5.4732 3.8308 15 6 1.1052 -5.9819 4.9274 16 8 2.2133 -6.4751 4.8433 17 6 0.4133 -5.9401 6.2296 18 6 -0.8623 -5.3764 6.3429 19 6 -1.4708 -5.3611 7.5863 20 6 -0.8108 -5.8987 8.6776 21 7 0.3953 -6.4268 8.5426 22 6 1.0195 -6.4666 7.3798 23 8 2.2531 -7.0193 7.2972 24 6 -1.6787 -5.7612 9.9124 25 6 -3.1034 -5.4863 9.3794 26 6 -2.8215 -4.8288 8.0117 27 6 0.3325 -5.2742 -1.1177 28 6 1.4400 -6.1447 -0.5206 29 1 -0.4850 0.8400 -0.0004 30 1 0.3556 -2.3881 0.0005 31 1 2.7583 -3.6721 0.8359 32 1 2.6070 -3.7594 -0.9355 33 1 -0.5946 -5.4734 1.3413 34 1 0.0360 -3.8667 1.7761 35 1 2.1344 -4.9635 2.6073 36 1 1.4023 -6.5502 2.2685 37 1 -0.3749 -5.0794 3.8980 38 1 -1.3612 -4.9621 5.4792 39 1 2.9753 -6.3924 7.4412 40 1 -1.6633 -6.6853 10.4901 41 1 -1.3353 -4.9275 10.5249 42 1 -3.6387 -4.8004 10.0359 43 1 -3.6572 -6.4169 9.2552 44 1 -2.7858 -3.7442 8.1129 45 1 -3.5859 -5.1159 7.2895 46 1 -0.6954 -5.6181 -1.0021 47 1 0.5508 -4.7492 -2.0477 48 1 2.3872 -6.1925 -1.0578 49 1 1.1408 -7.0613 -0.0122 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168154938.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:32:39 Heat of formation + Delta-G solvation = -35.578465 kcal Electronic energy + Delta-G solvation = -29464.599253 eV Core-core repulsion = 25391.521154 eV Total energy + Delta-G solvation = -4073.078099 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.20775 -40.56469 -39.54262 -38.83612 -36.30684 -36.07236 -35.72563 -34.11467 -32.77501 -31.24873 -29.84387 -28.73051 -27.79824 -25.29844 -24.72984 -24.60677 -23.59837 -22.86093 -21.86653 -21.57357 -20.04032 -19.65490 -19.03870 -18.44280 -18.22241 -17.04837 -16.88548 -16.68108 -16.54603 -16.47337 -16.02427 -15.67454 -15.36878 -15.12069 -15.03033 -14.79458 -14.28615 -14.06591 -13.97182 -13.83178 -13.78324 -13.56461 -13.17365 -13.01359 -12.93740 -12.76781 -12.71066 -12.58263 -12.27987 -12.18678 -12.08183 -11.92635 -11.84752 -11.77027 -11.28302 -11.07898 -11.00101 -10.89787 -10.60622 -10.41859 -10.19088 -9.65806 -8.96840 -7.94332 -5.21608 -0.58600 -0.02921 1.46520 1.48574 1.54725 1.68716 1.94459 2.32003 2.54336 2.57263 2.89619 3.21039 3.34142 3.38355 3.58153 3.78304 3.81521 3.84330 3.92939 3.98123 4.07076 4.11510 4.20818 4.24890 4.31847 4.41072 4.48456 4.55528 4.64040 4.79544 4.80993 4.84441 4.85522 4.92808 4.94171 4.97396 5.08456 5.08997 5.16594 5.21736 5.26729 5.34014 5.34703 5.35630 5.38659 5.39277 5.49137 6.28153 6.37062 6.47521 6.73694 7.08103 7.35507 8.11359 8.37944 9.28585 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009716 B = 0.002458 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2881.228040 B =11387.592883 C =12696.549273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.069 4.069 3 Si 0.968 3.032 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.247 4.247 8 H 0.068 0.932 9 N -0.734 5.734 10 C 0.187 3.813 11 C -0.138 4.138 12 C -0.077 4.077 13 C 0.135 3.865 14 N -0.711 5.711 15 C 0.561 3.439 16 O -0.560 6.560 17 C -0.218 4.218 18 C -0.016 4.016 19 C -0.166 4.166 20 C 0.153 3.847 21 N -0.530 5.530 22 C 0.354 3.646 23 O -0.477 6.477 24 C -0.075 4.075 25 C -0.110 4.110 26 C -0.077 4.077 27 C -0.163 4.163 28 C -0.152 4.152 29 H 0.252 0.748 30 H 0.377 0.623 31 H 0.017 0.983 32 H 0.012 0.988 33 H 0.091 0.909 34 H 0.062 0.938 35 H 0.046 0.954 36 H 0.073 0.927 37 H 0.411 0.589 38 H 0.168 0.832 39 H 0.415 0.585 40 H 0.093 0.907 41 H 0.108 0.892 42 H 0.110 0.890 43 H 0.083 0.917 44 H 0.100 0.900 45 H 0.098 0.902 46 H 0.109 0.891 47 H 0.080 0.920 48 H 0.095 0.905 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.746 -14.025 17.453 24.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.262 4.262 3 Si 0.797 3.203 4 H -0.207 1.207 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.379 4.379 8 H 0.086 0.914 9 N -0.377 5.377 10 C 0.061 3.939 11 C -0.139 4.139 12 C -0.115 4.115 13 C 0.011 3.989 14 N -0.364 5.364 15 C 0.348 3.652 16 O -0.440 6.440 17 C -0.225 4.225 18 C -0.041 4.041 19 C -0.168 4.168 20 C 0.015 3.985 21 N -0.249 5.249 22 C 0.174 3.826 23 O -0.286 6.286 24 C -0.113 4.113 25 C -0.147 4.147 26 C -0.114 4.114 27 C -0.200 4.200 28 C -0.190 4.190 29 H 0.061 0.939 30 H 0.210 0.790 31 H 0.035 0.965 32 H 0.030 0.970 33 H 0.110 0.890 34 H 0.080 0.920 35 H 0.064 0.936 36 H 0.091 0.909 37 H 0.249 0.751 38 H 0.185 0.815 39 H 0.277 0.723 40 H 0.111 0.889 41 H 0.126 0.874 42 H 0.129 0.871 43 H 0.102 0.898 44 H 0.118 0.882 45 H 0.116 0.884 46 H 0.127 0.873 47 H 0.098 0.902 48 H 0.113 0.887 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -8.594 -15.141 17.928 24.990 hybrid contribution 0.359 1.927 -0.925 2.167 sum -8.234 -13.214 17.003 23.055 Atomic orbital electron populations 1.69781 1.06282 1.26067 1.59317 1.25454 0.96397 1.00654 1.03710 0.85298 0.77325 0.79644 0.78004 1.20697 1.21806 1.20734 1.19546 0.91279 0.85594 1.41462 0.91386 1.42405 1.05640 1.00508 1.89131 1.20237 0.92694 0.84186 0.96823 1.21394 1.02251 0.96066 0.94226 1.21108 0.97583 1.01246 0.91521 1.21223 0.95437 1.00979 0.81217 1.45813 1.21804 1.60858 1.07897 1.18027 0.85225 0.77986 0.83958 1.90787 1.20712 1.46239 1.86215 1.20908 0.98859 1.08085 0.94674 1.21477 0.91227 0.92575 0.98861 1.21855 1.00528 1.01396 0.93009 1.22678 0.88043 0.89354 0.98428 1.66402 1.12294 1.19251 1.26993 1.19059 0.87750 0.89012 0.86773 1.84668 1.12801 1.38577 1.92596 1.21365 0.92943 1.04516 0.92477 1.22420 0.94387 1.02415 0.95490 1.21130 0.90552 1.01488 0.98267 1.23012 0.97953 1.02992 0.96026 1.23059 0.99769 0.93414 1.02724 0.93946 0.79014 0.96476 0.97027 0.89042 0.91972 0.93562 0.90871 0.75145 0.81511 0.72321 0.88883 0.87430 0.87130 0.89786 0.88222 0.88391 0.87259 0.90169 0.88662 0.86813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.67 13.06 21.65 0.28 -57.39 16 2 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 3 Si 0.97 46.04 29.55 68.60 2.03 48.07 16 4 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 5 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 6 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 7 C -0.25 -13.85 9.99 84.03 0.84 -13.01 16 8 H 0.07 3.74 7.83 -2.91 -0.02 3.71 16 9 N -0.73 -36.85 5.30 -343.46 -1.82 -38.67 16 10 C 0.19 7.58 6.10 86.38 0.53 8.11 16 11 C -0.14 -4.22 1.52 -52.18 -0.08 -4.30 16 12 C -0.08 -2.08 5.24 30.60 0.16 -1.92 16 13 C 0.13 3.70 5.51 86.38 0.48 4.18 16 14 N -0.71 -17.59 5.51 -466.29 -2.57 -20.16 16 15 C 0.56 16.36 7.77 86.69 0.67 17.03 16 16 O -0.56 -20.35 15.20 16.78 0.26 -20.09 16 17 C -0.22 -5.51 5.90 -19.93 -0.12 -5.62 16 18 C -0.02 -0.29 9.64 22.72 0.22 -0.07 16 19 C -0.17 -2.64 6.14 -19.59 -0.12 -2.76 16 20 C 0.15 2.90 7.32 42.79 0.31 3.21 16 21 N -0.53 -13.56 10.36 -295.12 -3.06 -16.62 16 22 C 0.35 9.76 7.77 85.16 0.66 10.42 16 23 O -0.48 -13.56 11.67 -66.43 -0.78 -14.34 16 24 C -0.08 -0.77 6.78 30.66 0.21 -0.57 16 25 C -0.11 -0.58 7.10 31.59 0.22 -0.36 16 26 C -0.08 -0.62 6.76 30.49 0.21 -0.41 16 27 C -0.16 -4.41 9.90 30.59 0.30 -4.11 16 28 C -0.15 -3.68 9.57 30.59 0.29 -3.39 16 29 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 30 H 0.38 19.80 7.46 -92.71 -0.69 19.11 16 31 H 0.02 0.73 7.69 -2.39 -0.02 0.71 16 32 H 0.01 0.49 8.09 -2.39 -0.02 0.47 16 33 H 0.09 1.96 7.94 -2.39 -0.02 1.94 16 34 H 0.06 2.02 7.64 -2.39 -0.02 2.00 16 35 H 0.05 1.54 7.69 -2.39 -0.02 1.52 16 36 H 0.07 1.93 7.80 -2.39 -0.02 1.91 16 37 H 0.41 7.74 6.58 -92.71 -0.61 7.13 16 38 H 0.17 2.05 6.52 -2.91 -0.02 2.03 16 39 H 0.42 8.70 9.06 -74.05 -0.67 8.03 16 40 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 43 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 44 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.10 0.55 8.14 -2.38 -0.02 0.53 16 46 H 0.11 2.51 8.08 -2.39 -0.02 2.49 16 47 H 0.08 2.44 8.14 -2.38 -0.02 2.42 16 48 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 49 H 0.11 2.26 7.98 -2.39 -0.02 2.24 16 Total: -1.00 -77.41 404.26 -1.37 -78.78 By element: Atomic # 1 Polarization: 38.45 SS G_CDS: -0.97 Total: 37.48 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: 5.25 Total: 2.94 kcal Atomic # 7 Polarization: -125.67 SS G_CDS: -7.16 Total: -132.83 kcal Atomic # 8 Polarization: -33.91 SS G_CDS: -0.52 Total: -34.43 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -77.41 -1.37 -78.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168154938.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.202 kcal (2) G-P(sol) polarization free energy of solvation -77.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds