Wall clock time and date at job start Sat Apr 11 2020 07:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30786 * 1 3 3 Si 1.86801 * 120.00775 * 2 1 4 4 H 1.48495 * 109.47657 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46988 * 300.00509 * 3 2 1 6 6 H 1.48504 * 109.46785 * 59.99619 * 3 2 1 7 7 C 1.40067 * 119.99443 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99736 * 194.78768 * 7 2 1 9 9 C 1.40898 * 120.00392 * 14.79438 * 7 2 1 10 10 C 1.40265 * 120.69810 * 24.66964 * 9 7 2 11 11 C 1.40226 * 118.13956 * 180.25619 * 10 9 7 12 12 C 1.40845 * 120.56723 * 180.35785 * 11 10 9 13 13 C 1.36138 * 119.71136 * 179.72832 * 12 11 10 14 14 C 1.39298 * 120.76622 * 359.66201 * 13 12 11 15 15 C 1.36281 * 121.07080 * 0.02562 * 14 13 12 16 16 C 1.40432 * 119.96941 * 0.02562 * 15 14 13 17 17 N 1.34032 * 120.12494 * 180.02562 * 16 15 14 18 18 C 1.31363 * 121.96642 * 179.97438 * 17 16 15 19 19 N 1.38087 * 119.76938 * 179.97438 * 18 17 16 20 20 C 1.46507 * 119.99429 * 0.02562 * 19 18 17 21 21 C 1.53000 * 109.46957 * 179.97438 * 20 19 18 22 22 O 1.42901 * 109.47183 * 65.00052 * 21 20 19 23 23 C 1.42902 * 114.00117 * 179.97438 * 22 21 20 24 24 C 1.53002 * 109.46910 * 180.02562 * 23 22 21 25 25 O 1.42902 * 109.47121 * 65.00760 * 24 23 22 26 26 C 1.42898 * 113.99866 * 180.02562 * 25 24 23 27 27 C 1.53007 * 109.46891 * 179.97438 * 26 25 24 28 28 N 1.46901 * 109.46872 * 64.99516 * 27 26 25 29 29 H 0.97003 * 119.99477 * 359.97438 * 1 2 3 30 30 H 1.08003 * 120.92692 * 359.97438 * 10 9 7 31 31 H 1.08003 * 120.14596 * 359.41127 * 12 11 10 32 32 H 1.07999 * 119.61562 * 179.67838 * 13 12 11 33 33 H 1.08001 * 119.46516 * 180.02562 * 14 13 12 34 34 H 1.07998 * 120.01365 * 179.97438 * 15 14 13 35 35 H 0.96996 * 120.00743 * 180.02562 * 19 18 17 36 36 H 1.08988 * 109.47520 * 300.00267 * 20 19 18 37 37 H 1.09004 * 109.46981 * 60.00514 * 20 19 18 38 38 H 1.08998 * 109.47475 * 185.00441 * 21 20 19 39 39 H 1.09000 * 109.47277 * 305.00219 * 21 20 19 40 40 H 1.09000 * 109.47445 * 300.00550 * 23 22 21 41 41 H 1.09005 * 109.46741 * 60.00837 * 23 22 21 42 42 H 1.09000 * 109.46969 * 185.00504 * 24 23 22 43 43 H 1.08994 * 109.47291 * 305.00112 * 24 23 22 44 44 H 1.08997 * 109.46524 * 299.98965 * 26 25 24 45 45 H 1.08993 * 109.47711 * 59.99684 * 26 25 24 46 46 H 1.08996 * 109.46612 * 184.99784 * 27 26 25 47 47 H 1.09001 * 109.46951 * 304.99890 * 27 26 25 48 48 H 1.00894 * 111.00097 * 56.05217 * 28 27 26 49 49 H 1.00906 * 110.99415 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2421 1.6176 0.0000 4 1 3.7020 1.3462 0.0006 5 1 1.8833 2.3964 -1.2124 6 1 1.8833 2.3964 1.2125 7 6 2.0081 -1.2131 0.0005 8 1 3.0613 -1.2285 0.2393 9 6 1.3386 -2.4132 -0.3105 10 6 0.1762 -2.4020 -1.0955 11 6 -0.4498 -3.6269 -1.3677 12 6 -1.6154 -3.6758 -2.1567 13 6 -2.2058 -4.8751 -2.4146 14 6 -1.6666 -6.0573 -1.9127 15 6 -0.5365 -6.0473 -1.1512 16 6 0.1030 -4.8312 -0.8608 17 7 1.2149 -4.8177 -0.1126 18 6 1.8424 -3.7015 0.1807 19 7 2.9845 -3.7403 0.9559 20 6 3.4925 -5.0234 1.4479 21 6 4.7585 -4.7877 2.2741 22 8 4.4302 -4.0371 3.4450 23 6 5.5483 -3.7613 4.2911 24 6 5.0819 -2.9580 5.5069 25 8 4.1989 -3.7578 6.2961 26 6 3.7025 -3.0975 7.4621 27 6 2.7722 -4.0422 8.2259 28 7 3.5422 -5.1887 8.7264 29 1 -0.4849 0.8401 0.0004 30 1 -0.2278 -1.4754 -1.4758 31 1 -2.0420 -2.7654 -2.5512 32 1 -3.1025 -4.9103 -3.0155 33 1 -2.1520 -6.9972 -2.1306 34 1 -0.1334 -6.9741 -0.7704 35 1 3.4503 -2.9182 1.1748 36 1 2.7352 -5.4994 2.0706 37 1 3.7264 -5.6700 0.6020 38 1 5.1861 -5.7470 2.5655 39 1 5.4832 -4.2329 1.6782 40 1 5.9920 -4.6995 4.6243 41 1 6.2897 -3.1853 3.7372 42 1 5.9461 -2.6715 6.1062 43 1 4.5592 -2.0623 5.1717 44 1 4.5378 -2.8137 8.1021 45 1 3.1509 -2.2049 7.1672 46 1 2.3245 -3.5107 9.0655 47 1 1.9861 -4.3959 7.5588 48 1 4.3169 -4.8831 9.2960 49 1 2.9496 -5.8281 9.2346 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170507926.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:32:43 Heat of formation + Delta-G solvation = -47.083741 kcal Electronic energy + Delta-G solvation = -29465.314829 eV Core-core repulsion = 25391.737824 eV Total energy + Delta-G solvation = -4073.577006 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.06958 -38.56406 -37.60236 -36.43915 -34.74317 -34.34369 -33.55035 -31.40294 -30.68607 -29.45760 -28.75665 -27.65441 -27.05215 -25.42871 -22.76125 -22.56310 -22.13923 -21.61257 -21.30173 -20.31973 -18.08612 -17.20248 -17.03000 -16.81166 -16.28672 -16.25716 -15.65362 -15.50280 -15.19646 -14.82145 -14.67861 -14.25769 -14.17939 -13.74129 -13.50881 -13.29975 -13.10174 -13.07029 -12.80636 -12.48046 -12.35789 -11.99000 -11.92385 -11.75610 -11.55970 -11.37870 -11.26419 -11.06289 -10.95931 -10.87019 -10.69646 -10.57963 -10.31562 -9.79400 -9.65491 -9.53029 -9.45767 -8.90507 -8.76168 -8.61455 -8.09893 -7.14493 -6.86582 -6.47427 -4.34861 1.92276 2.32941 2.92416 2.99512 3.03166 3.56340 3.60451 3.71304 3.81109 4.10222 4.20382 4.31935 4.80746 4.82490 4.95852 5.02122 5.09585 5.19459 5.21896 5.31729 5.36953 5.42103 5.48854 5.50772 5.69811 5.72003 5.74685 5.80396 5.88527 5.96794 6.13956 6.25274 6.33065 6.44323 6.55736 6.63908 6.82841 6.90632 7.00753 7.15326 7.17396 7.19245 7.31747 7.37934 7.53947 7.56901 7.74677 7.90023 7.99867 8.21526 8.39528 8.53152 8.65027 8.81577 9.60047 10.05347 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.007780 B = 0.003049 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3597.907048 B = 9181.140898 C =11066.474677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.072 3.928 3 Si 0.911 3.089 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.437 4.437 8 H 0.078 0.922 9 C 0.043 3.957 10 C -0.187 4.187 11 C -0.068 4.068 12 C -0.119 4.119 13 C -0.142 4.142 14 C -0.165 4.165 15 C -0.090 4.090 16 C 0.088 3.912 17 N -0.563 5.563 18 C 0.389 3.611 19 N -0.713 5.713 20 C 0.143 3.857 21 C 0.050 3.950 22 O -0.370 6.370 23 C 0.065 3.935 24 C 0.062 3.938 25 O -0.361 6.361 26 C 0.063 3.937 27 C 0.062 3.938 28 N -0.842 5.842 29 H 0.283 0.717 30 H 0.133 0.867 31 H 0.106 0.894 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.108 0.892 35 H 0.408 0.592 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.051 0.949 40 H 0.055 0.945 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.042 0.958 45 H 0.054 0.946 46 H 0.039 0.961 47 H 0.084 0.916 48 H 0.336 0.664 49 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.021 -2.765 11.289 14.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.147 4.147 3 Si 0.735 3.265 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.467 4.467 8 H 0.097 0.903 9 C 0.037 3.963 10 C -0.213 4.213 11 C -0.071 4.071 12 C -0.139 4.139 13 C -0.161 4.161 14 C -0.185 4.185 15 C -0.110 4.110 16 C -0.030 4.030 17 N -0.284 5.284 18 C 0.135 3.865 19 N -0.351 5.351 20 C 0.018 3.982 21 C -0.027 4.027 22 O -0.289 6.289 23 C -0.012 4.012 24 C -0.015 4.015 25 O -0.280 6.280 26 C -0.014 4.014 27 C -0.069 4.069 28 N -0.372 5.372 29 H 0.094 0.906 30 H 0.150 0.850 31 H 0.124 0.876 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.126 0.874 35 H 0.245 0.755 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.060 0.940 45 H 0.072 0.928 46 H 0.057 0.943 47 H 0.103 0.897 48 H 0.148 0.852 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 8.967 -3.892 10.812 14.576 hybrid contribution 0.180 2.461 0.867 2.616 sum 9.147 -1.431 11.679 14.904 Atomic orbital electron populations 1.69802 1.07580 1.29324 1.33512 1.25892 0.94816 1.01291 0.92740 0.86205 0.80781 0.80785 0.78695 1.18348 1.19592 1.19913 1.19314 0.96625 0.90665 1.40075 0.90349 1.18964 0.94472 0.90114 0.92799 1.21291 1.00018 0.95571 1.04389 1.18660 0.95757 0.94338 0.98389 1.20830 0.96078 0.96870 1.00075 1.20421 1.00129 0.93060 1.02515 1.20293 0.98238 0.97080 1.02912 1.20403 0.95564 0.95985 0.99019 1.18065 0.93090 0.92308 0.99543 1.67008 1.11523 1.28188 1.21663 1.20131 0.87141 0.89835 0.89422 1.43933 1.27273 1.08020 1.55827 1.21061 0.93797 0.87317 0.96017 1.22830 0.97744 0.95470 0.86606 1.88082 1.32129 1.74519 1.34167 1.22449 0.89258 0.99157 0.90297 1.22507 0.93375 0.94448 0.91130 1.88087 1.64218 1.39469 1.36200 1.22490 0.96472 0.95003 0.87431 1.21813 0.96055 0.91564 0.97445 1.58571 1.13926 1.17996 1.46731 0.90626 0.84973 0.87576 0.88166 0.88014 0.87437 0.75469 0.91654 0.91220 0.92288 0.93060 0.92664 0.92109 0.92417 0.92377 0.93969 0.92821 0.94260 0.89720 0.85172 0.84665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.40 10.83 55.55 0.60 -18.80 16 2 C 0.07 1.70 5.22 -17.31 -0.09 1.61 16 3 Si 0.91 17.62 29.59 -169.99 -5.03 12.59 16 4 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 5 H -0.27 -5.22 7.11 56.52 0.40 -4.81 16 6 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 7 C -0.44 -10.77 8.60 -37.89 -0.33 -11.10 16 8 H 0.08 1.79 6.76 -52.48 -0.35 1.43 16 9 C 0.04 1.12 5.74 -104.67 -0.60 0.52 16 10 C -0.19 -4.94 8.53 -38.07 -0.32 -5.27 16 11 C -0.07 -1.72 5.74 -106.77 -0.61 -2.33 16 12 C -0.12 -2.66 9.75 -39.35 -0.38 -3.05 16 13 C -0.14 -2.84 9.96 -39.94 -0.40 -3.24 16 14 C -0.17 -3.27 9.95 -39.89 -0.40 -3.66 16 15 C -0.09 -1.97 9.94 -39.46 -0.39 -2.36 16 16 C 0.09 2.19 6.60 -84.69 -0.56 1.63 16 17 N -0.56 -13.98 9.45 -8.55 -0.08 -14.06 16 18 C 0.39 9.48 7.67 -153.66 -1.18 8.30 16 19 N -0.71 -14.53 5.57 -58.62 -0.33 -14.85 16 20 C 0.14 2.44 6.06 -4.04 -0.02 2.42 16 21 C 0.05 0.68 6.07 37.16 0.23 0.91 16 22 O -0.37 -5.70 10.25 -40.08 -0.41 -6.11 16 23 C 0.07 0.76 6.32 37.16 0.23 1.00 16 24 C 0.06 0.71 6.32 37.16 0.23 0.95 16 25 O -0.36 -4.93 10.26 -40.08 -0.41 -5.34 16 26 C 0.06 0.66 6.22 37.16 0.23 0.89 16 27 C 0.06 0.60 7.17 -3.82 -0.03 0.57 16 28 N -0.84 -7.67 9.57 -10.37 -0.10 -7.77 16 29 H 0.28 6.39 8.30 -40.82 -0.34 6.06 16 30 H 0.13 3.57 6.15 -52.48 -0.32 3.24 16 31 H 0.11 2.20 8.06 -52.48 -0.42 1.78 16 32 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 33 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 34 H 0.11 2.16 8.06 -52.49 -0.42 1.73 16 35 H 0.41 7.99 6.80 -40.82 -0.28 7.71 16 36 H 0.07 1.24 8.14 -51.94 -0.42 0.82 16 37 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 47 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 48 H 0.34 2.45 8.99 -39.30 -0.35 2.10 16 49 H 0.34 2.48 9.08 -39.29 -0.36 2.12 16 LS Contribution 408.70 15.07 6.16 6.16 Total: -1.00 -31.14 408.70 -11.55 -42.69 By element: Atomic # 1 Polarization: 25.26 SS G_CDS: -7.56 Total: 17.70 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: -4.39 Total: -12.21 kcal Atomic # 7 Polarization: -55.57 SS G_CDS: 0.09 Total: -55.48 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: -0.82 Total: -11.45 kcal Atomic # 14 Polarization: 17.62 SS G_CDS: -5.03 Total: 12.59 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -31.14 -11.55 -42.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170507926.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.393 kcal (2) G-P(sol) polarization free energy of solvation -31.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds