Wall clock time and date at job start Sat Apr 11 2020 07:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30786 * 1 3 3 Si 1.86801 * 120.00775 * 2 1 4 4 H 1.48495 * 109.47657 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46988 * 300.00509 * 3 2 1 6 6 H 1.48504 * 109.46785 * 59.99619 * 3 2 1 7 7 C 1.40067 * 119.99443 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99736 * 194.78768 * 7 2 1 9 9 C 1.40898 * 120.00392 * 14.79438 * 7 2 1 10 10 C 1.40265 * 120.69810 * 24.66964 * 9 7 2 11 11 C 1.40226 * 118.13956 * 180.25619 * 10 9 7 12 12 C 1.40845 * 120.56723 * 180.35785 * 11 10 9 13 13 C 1.36138 * 119.71136 * 179.72832 * 12 11 10 14 14 C 1.39298 * 120.76622 * 359.66201 * 13 12 11 15 15 C 1.36281 * 121.07080 * 0.02562 * 14 13 12 16 16 C 1.40432 * 119.96941 * 0.02562 * 15 14 13 17 17 N 1.34032 * 120.12494 * 180.02562 * 16 15 14 18 18 C 1.31363 * 121.96642 * 179.97438 * 17 16 15 19 19 N 1.38087 * 119.76938 * 179.97438 * 18 17 16 20 20 C 1.46507 * 119.99429 * 0.02562 * 19 18 17 21 21 C 1.53000 * 109.46957 * 179.97438 * 20 19 18 22 22 O 1.42901 * 109.47183 * 65.00052 * 21 20 19 23 23 C 1.42902 * 114.00117 * 179.97438 * 22 21 20 24 24 C 1.53002 * 109.46910 * 180.02562 * 23 22 21 25 25 O 1.42902 * 109.47121 * 65.00760 * 24 23 22 26 26 C 1.42898 * 113.99866 * 180.02562 * 25 24 23 27 27 C 1.53007 * 109.46891 * 179.97438 * 26 25 24 28 28 N 1.46901 * 109.46872 * 64.99516 * 27 26 25 29 29 H 0.97003 * 119.99477 * 359.97438 * 1 2 3 30 30 H 1.08003 * 120.92692 * 359.97438 * 10 9 7 31 31 H 1.08003 * 120.14596 * 359.41127 * 12 11 10 32 32 H 1.07999 * 119.61562 * 179.67838 * 13 12 11 33 33 H 1.08001 * 119.46516 * 180.02562 * 14 13 12 34 34 H 1.07998 * 120.01365 * 179.97438 * 15 14 13 35 35 H 0.96996 * 120.00743 * 180.02562 * 19 18 17 36 36 H 1.08988 * 109.47520 * 300.00267 * 20 19 18 37 37 H 1.09004 * 109.46981 * 60.00514 * 20 19 18 38 38 H 1.08998 * 109.47475 * 185.00441 * 21 20 19 39 39 H 1.09000 * 109.47277 * 305.00219 * 21 20 19 40 40 H 1.09000 * 109.47445 * 300.00550 * 23 22 21 41 41 H 1.09005 * 109.46741 * 60.00837 * 23 22 21 42 42 H 1.09000 * 109.46969 * 185.00504 * 24 23 22 43 43 H 1.08994 * 109.47291 * 305.00112 * 24 23 22 44 44 H 1.08997 * 109.46524 * 299.98965 * 26 25 24 45 45 H 1.08993 * 109.47711 * 59.99684 * 26 25 24 46 46 H 1.08996 * 109.46612 * 184.99784 * 27 26 25 47 47 H 1.09001 * 109.46951 * 304.99890 * 27 26 25 48 48 H 1.00894 * 111.00097 * 56.05217 * 28 27 26 49 49 H 1.00906 * 110.99415 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2421 1.6176 0.0000 4 1 3.7020 1.3462 0.0006 5 1 1.8833 2.3964 -1.2124 6 1 1.8833 2.3964 1.2125 7 6 2.0081 -1.2131 0.0005 8 1 3.0613 -1.2285 0.2393 9 6 1.3386 -2.4132 -0.3105 10 6 0.1762 -2.4020 -1.0955 11 6 -0.4498 -3.6269 -1.3677 12 6 -1.6154 -3.6758 -2.1567 13 6 -2.2058 -4.8751 -2.4146 14 6 -1.6666 -6.0573 -1.9127 15 6 -0.5365 -6.0473 -1.1512 16 6 0.1030 -4.8312 -0.8608 17 7 1.2149 -4.8177 -0.1126 18 6 1.8424 -3.7015 0.1807 19 7 2.9845 -3.7403 0.9559 20 6 3.4925 -5.0234 1.4479 21 6 4.7585 -4.7877 2.2741 22 8 4.4302 -4.0371 3.4450 23 6 5.5483 -3.7613 4.2911 24 6 5.0819 -2.9580 5.5069 25 8 4.1989 -3.7578 6.2961 26 6 3.7025 -3.0975 7.4621 27 6 2.7722 -4.0422 8.2259 28 7 3.5422 -5.1887 8.7264 29 1 -0.4849 0.8401 0.0004 30 1 -0.2278 -1.4754 -1.4758 31 1 -2.0420 -2.7654 -2.5512 32 1 -3.1025 -4.9103 -3.0155 33 1 -2.1520 -6.9972 -2.1306 34 1 -0.1334 -6.9741 -0.7704 35 1 3.4503 -2.9182 1.1748 36 1 2.7352 -5.4994 2.0706 37 1 3.7264 -5.6700 0.6020 38 1 5.1861 -5.7470 2.5655 39 1 5.4832 -4.2329 1.6782 40 1 5.9920 -4.6995 4.6243 41 1 6.2897 -3.1853 3.7372 42 1 5.9461 -2.6715 6.1062 43 1 4.5592 -2.0623 5.1717 44 1 4.5378 -2.8137 8.1021 45 1 3.1509 -2.2049 7.1672 46 1 2.3245 -3.5107 9.0655 47 1 1.9861 -4.3959 7.5588 48 1 4.3169 -4.8831 9.2960 49 1 2.9496 -5.8281 9.2346 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170507926.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:32:42 Heat of formation + Delta-G solvation = -68.167036 kcal Electronic energy + Delta-G solvation = -29466.229070 eV Core-core repulsion = 25391.737824 eV Total energy + Delta-G solvation = -4074.491246 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.82946 -39.56423 -38.71794 -37.98644 -36.16869 -35.50340 -35.11727 -33.21086 -31.91642 -30.96979 -30.24336 -28.82886 -28.23621 -27.24905 -24.27495 -23.46375 -23.35805 -22.94054 -22.87487 -22.08184 -19.84518 -18.57490 -18.16919 -17.94736 -17.83315 -17.29866 -17.11742 -16.51528 -16.43340 -16.29908 -15.98781 -15.50461 -15.21839 -15.17086 -14.92425 -14.75740 -14.61472 -14.33105 -14.12114 -14.02533 -13.81688 -13.51706 -13.34812 -12.95726 -12.90045 -12.80102 -12.66941 -12.37374 -12.31588 -12.20904 -12.04421 -11.94036 -11.79024 -11.55249 -11.24759 -10.59086 -10.57093 -10.50414 -10.28158 -9.96219 -9.58227 -8.97074 -8.66138 -8.22432 -6.24111 0.15766 0.55722 1.36215 1.40209 1.54434 1.75665 2.17482 2.35968 2.55345 2.74987 2.77944 3.02582 3.65821 3.84989 3.92642 4.02522 4.11134 4.20754 4.23506 4.24091 4.30149 4.31241 4.35732 4.44908 4.48337 4.51679 4.53516 4.55826 4.67769 4.73386 4.78712 4.81204 4.84823 4.88868 4.96306 5.03068 5.10926 5.27724 5.45461 5.62292 5.72720 5.85931 5.98010 6.05012 6.15361 6.27646 6.31231 6.36692 6.42629 6.61447 6.65346 6.74484 6.79406 6.98322 7.76740 8.28648 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.007780 B = 0.003049 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3597.907048 B = 9181.140898 C =11066.474677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.030 3.970 3 Si 0.987 3.013 4 H -0.249 1.249 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.458 4.458 8 H 0.090 0.910 9 C 0.016 3.984 10 C -0.216 4.216 11 C -0.096 4.096 12 C -0.139 4.139 13 C -0.130 4.130 14 C -0.150 4.150 15 C -0.105 4.105 16 C 0.057 3.943 17 N -0.573 5.573 18 C 0.375 3.625 19 N -0.704 5.704 20 C 0.144 3.856 21 C 0.059 3.941 22 O -0.405 6.405 23 C 0.060 3.940 24 C 0.058 3.942 25 O -0.393 6.393 26 C 0.058 3.942 27 C 0.062 3.938 28 N -0.855 5.855 29 H 0.289 0.711 30 H 0.115 0.885 31 H 0.112 0.888 32 H 0.142 0.858 33 H 0.146 0.854 34 H 0.123 0.877 35 H 0.410 0.590 36 H 0.041 0.959 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.046 0.954 44 H 0.065 0.935 45 H 0.051 0.949 46 H 0.063 0.937 47 H 0.059 0.941 48 H 0.347 0.653 49 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.057 -3.152 11.651 15.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.186 4.186 3 Si 0.807 3.193 4 H -0.171 1.171 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.488 4.488 8 H 0.108 0.892 9 C 0.010 3.990 10 C -0.242 4.242 11 C -0.100 4.100 12 C -0.158 4.158 13 C -0.149 4.149 14 C -0.169 4.169 15 C -0.124 4.124 16 C -0.060 4.060 17 N -0.295 5.295 18 C 0.120 3.880 19 N -0.341 5.341 20 C 0.020 3.980 21 C -0.017 4.017 22 O -0.325 6.325 23 C -0.016 4.016 24 C -0.018 4.018 25 O -0.312 6.312 26 C -0.019 4.019 27 C -0.068 4.068 28 N -0.387 5.387 29 H 0.100 0.900 30 H 0.133 0.867 31 H 0.130 0.870 32 H 0.160 0.840 33 H 0.164 0.836 34 H 0.141 0.859 35 H 0.248 0.752 36 H 0.059 0.941 37 H 0.093 0.907 38 H 0.103 0.897 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.104 0.896 42 H 0.107 0.893 43 H 0.064 0.936 44 H 0.083 0.917 45 H 0.069 0.931 46 H 0.081 0.919 47 H 0.077 0.923 48 H 0.160 0.840 49 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 10.019 -4.304 11.193 15.627 hybrid contribution -0.242 2.463 0.758 2.589 sum 9.777 -1.840 11.951 15.550 Atomic orbital electron populations 1.69887 1.09324 1.30633 1.34015 1.26845 0.95495 1.04682 0.91578 0.85071 0.79732 0.75746 0.78710 1.17147 1.19306 1.19268 1.19628 0.97253 0.91092 1.40783 0.89190 1.19332 0.94955 0.91477 0.93263 1.21244 1.01333 0.95580 1.06033 1.18937 0.97162 0.94195 0.99677 1.21027 0.95783 0.98560 1.00462 1.20888 1.00672 0.91957 1.01380 1.20806 0.96830 0.98863 1.00416 1.20684 0.96474 0.95415 0.99851 1.18586 0.93713 0.93469 1.00221 1.67073 1.11968 1.28199 1.22269 1.20342 0.88248 0.89446 0.89995 1.44021 1.25994 1.09430 1.54696 1.21173 0.94809 0.85750 0.96313 1.22770 0.95766 0.97042 0.86117 1.88035 1.34489 1.74971 1.35002 1.22693 0.88706 1.00039 0.90123 1.22668 0.94054 0.93698 0.91424 1.88043 1.64967 1.40854 1.37383 1.22664 0.97350 0.94911 0.87012 1.21777 0.95441 0.91903 0.97716 1.58528 1.14595 1.18154 1.47465 0.90008 0.86718 0.86999 0.84046 0.83613 0.85943 0.75228 0.94055 0.90726 0.89724 0.91125 0.91885 0.89646 0.89336 0.93606 0.91727 0.93074 0.91907 0.92257 0.83959 0.83702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.25 10.83 21.85 0.24 -42.02 16 2 C 0.03 1.46 5.22 85.29 0.45 1.90 16 3 Si 0.99 36.33 29.59 68.60 2.03 38.36 16 4 H -0.25 -8.60 7.11 99.48 0.71 -7.90 16 5 H -0.27 -9.68 7.11 99.48 0.71 -8.98 16 6 H -0.27 -9.53 7.11 99.48 0.71 -8.82 16 7 C -0.46 -23.40 8.60 23.37 0.20 -23.20 16 8 H 0.09 4.20 6.76 -2.91 -0.02 4.18 16 9 C 0.02 0.89 5.74 -19.90 -0.11 0.78 16 10 C -0.22 -12.11 8.53 23.25 0.20 -11.91 16 11 C -0.10 -5.06 5.74 -21.26 -0.12 -5.18 16 12 C -0.14 -6.27 9.75 22.42 0.22 -6.05 16 13 C -0.13 -4.89 9.96 22.04 0.22 -4.67 16 14 C -0.15 -5.48 9.95 22.07 0.22 -5.26 16 15 C -0.10 -4.49 9.94 22.35 0.22 -4.27 16 16 C 0.06 2.93 6.60 40.24 0.27 3.19 16 17 N -0.57 -29.50 9.45 -180.98 -1.71 -31.21 16 18 C 0.37 19.09 7.67 135.70 1.04 20.14 16 19 N -0.70 -29.55 5.57 -339.37 -1.89 -31.45 16 20 C 0.14 4.98 6.06 86.38 0.52 5.50 16 21 C 0.06 1.54 6.07 71.98 0.44 1.98 16 22 O -0.40 -12.27 10.25 -144.35 -1.48 -13.75 16 23 C 0.06 1.32 6.32 71.98 0.45 1.77 16 24 C 0.06 1.26 6.32 71.98 0.45 1.72 16 25 O -0.39 -10.59 10.26 -144.35 -1.48 -12.07 16 26 C 0.06 1.16 6.22 71.98 0.45 1.61 16 27 C 0.06 1.18 7.17 86.31 0.62 1.80 16 28 N -0.86 -14.87 9.57 -186.71 -1.79 -16.65 16 29 H 0.29 13.54 8.30 -92.71 -0.77 12.77 16 30 H 0.12 6.64 6.15 -2.91 -0.02 6.62 16 31 H 0.11 4.75 8.06 -2.91 -0.02 4.72 16 32 H 0.14 4.13 8.06 -2.91 -0.02 4.10 16 33 H 0.15 4.07 8.06 -2.91 -0.02 4.05 16 34 H 0.12 4.78 8.06 -2.91 -0.02 4.75 16 35 H 0.41 16.44 6.80 -92.71 -0.63 15.81 16 36 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.07 2.49 8.14 -2.38 -0.02 2.48 16 38 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 42 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 48 H 0.35 4.59 8.99 -89.70 -0.81 3.78 16 49 H 0.35 4.85 9.08 -89.69 -0.81 4.03 16 Total: -1.00 -71.55 408.70 -1.62 -73.17 By element: Atomic # 1 Polarization: 57.01 SS G_CDS: -1.26 Total: 55.75 kcal Atomic # 6 Polarization: -25.87 SS G_CDS: 5.73 Total: -20.14 kcal Atomic # 7 Polarization: -116.17 SS G_CDS: -5.15 Total: -121.32 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -2.96 Total: -25.82 kcal Atomic # 14 Polarization: 36.33 SS G_CDS: 2.03 Total: 38.36 kcal Total: -71.55 -1.62 -73.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170507926.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.003 kcal (2) G-P(sol) polarization free energy of solvation -71.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds