Wall clock time and date at job start Sat Apr 11 2020 07:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86798 * 120.00175 * 2 1 4 4 H 1.48500 * 109.47359 * 239.99583 * 3 2 1 5 5 H 1.48497 * 109.47154 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47214 * 120.00009 * 3 2 1 7 7 C 1.38956 * 119.99736 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99674 * 179.97438 * 7 2 1 9 9 N 1.37094 * 120.00110 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00027 * 180.02562 * 9 7 2 11 11 O 1.21295 * 120.00201 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99798 * 180.02562 * 10 9 7 13 13 N 1.46903 * 109.46998 * 179.97438 * 12 10 9 14 14 C 1.46904 * 111.00204 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.46983 * 180.02562 * 14 13 12 16 16 C 1.53004 * 109.47000 * 179.97438 * 15 14 13 17 17 N 1.46499 * 109.47198 * 179.97438 * 16 15 14 18 18 C 1.34777 * 119.99665 * 180.27868 * 17 16 15 19 19 O 1.21553 * 120.00289 * 359.72074 * 18 17 16 20 20 C 1.47846 * 119.99557 * 179.72375 * 18 17 16 21 21 C 1.39590 * 120.18826 * 0.02562 * 20 18 17 22 22 C 1.37810 * 119.78543 * 179.97438 * 21 20 18 23 23 C 1.38667 * 120.41196 * 0.02562 * 22 21 20 24 24 C 1.38378 * 120.07695 * 359.97438 * 23 22 21 25 25 C 1.38234 * 119.99700 * 359.74278 * 24 23 22 26 26 C 1.51396 * 109.74347 * 180.02562 * 24 23 22 27 27 C 1.54336 * 105.17217 * 342.78162 * 26 24 23 28 28 C 1.51415 * 130.21968 * 180.02562 * 23 22 21 29 29 H 0.97007 * 120.00002 * 0.02562 * 1 2 3 30 30 H 0.97003 * 120.00232 * 359.97438 * 9 7 2 31 31 H 1.08999 * 109.47582 * 60.00001 * 12 10 9 32 32 H 1.09000 * 109.47057 * 299.99115 * 12 10 9 33 33 H 1.00901 * 110.99869 * 303.94978 * 13 12 10 34 34 H 1.08995 * 109.46789 * 59.99760 * 14 13 12 35 35 H 1.09007 * 109.46566 * 299.99922 * 14 13 12 36 36 H 1.08995 * 109.47672 * 60.00156 * 15 14 13 37 37 H 1.09006 * 109.46819 * 299.99586 * 15 14 13 38 38 H 1.09009 * 109.46730 * 59.99606 * 16 15 14 39 39 H 1.08998 * 109.46846 * 300.00150 * 16 15 14 40 40 H 0.97001 * 119.99790 * 359.97438 * 17 16 15 41 41 H 1.08000 * 120.11014 * 359.97438 * 21 20 18 42 42 H 1.07997 * 119.79290 * 179.97438 * 22 21 20 43 43 H 1.07998 * 119.94954 * 180.25522 * 25 24 23 44 44 H 1.08995 * 110.30556 * 223.86038 * 26 24 23 45 45 H 1.08999 * 110.38425 * 101.74465 * 26 24 23 46 46 H 1.09001 * 110.81710 * 268.18311 * 27 26 24 47 47 H 1.08995 * 110.98756 * 144.71822 * 27 26 24 48 48 H 1.09001 * 110.30472 * 316.11815 * 28 23 22 49 49 H 1.09006 * 110.29813 * 78.25850 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1020 1.6963 -1.2124 5 1 1.2832 2.7464 -0.0006 6 1 3.1019 1.6963 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3233 -2.3907 0.0005 10 6 1.9971 -3.5579 0.0016 11 8 3.2101 -3.5580 0.0021 12 6 1.2436 -4.8629 0.0010 13 7 2.1981 -5.9796 0.0017 14 6 1.4978 -7.2709 0.0018 15 6 2.5227 -8.4069 0.0032 16 6 1.7933 -9.7518 0.0039 17 7 2.7746 -10.8396 0.0047 18 6 2.3594 -12.1218 -0.0003 19 8 1.1706 -12.3757 -0.0002 20 6 3.3498 -13.2195 -0.0057 21 6 4.7158 -12.9323 -0.0052 22 6 5.6318 -13.9620 -0.0097 23 6 5.2048 -15.2813 -0.0153 24 6 3.8520 -15.5724 -0.0159 25 6 2.9245 -14.5474 -0.0055 26 6 3.6518 -17.0730 -0.0218 27 6 5.0085 -17.6598 -0.4657 28 6 6.0037 -16.5675 -0.0205 29 1 -0.4850 0.8401 -0.0004 30 1 0.3533 -2.3907 0.0005 31 1 0.6179 -4.9209 -0.8897 32 1 0.6160 -4.9205 0.8903 33 1 2.8336 -5.9125 -0.7792 34 1 0.8733 -7.3455 -0.8884 35 1 0.8725 -7.3450 0.8916 36 1 3.1469 -8.3321 0.8936 37 1 3.1483 -8.3329 -0.8864 38 1 1.1688 -9.8269 -0.8863 39 1 1.1680 -9.8255 0.8937 40 1 3.7233 -10.6369 0.0043 41 1 5.0539 -11.9066 -0.0012 42 1 6.6887 -13.7400 -0.0097 43 1 1.8689 -14.7755 -0.0018 44 1 2.8709 -17.3476 -0.7309 45 1 3.3959 -17.4259 0.9772 46 1 5.0376 -17.7932 -1.5472 47 1 5.2125 -18.6010 0.0447 48 1 6.8295 -16.4970 -0.7285 49 1 6.3797 -16.7831 0.9797 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175766755.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:32:46 Heat of formation + Delta-G solvation = -60.949953 kcal Electronic energy + Delta-G solvation = -27437.973417 eV Core-core repulsion = 23363.795127 eV Total energy + Delta-G solvation = -4074.178290 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.88414 -39.55308 -38.31591 -36.60180 -35.96984 -34.91404 -33.84372 -31.94686 -31.65947 -31.15900 -29.62475 -27.93168 -27.09928 -25.03943 -23.76852 -22.80516 -22.45978 -21.71873 -21.33759 -20.19708 -19.21754 -17.97300 -17.81665 -16.73549 -16.30255 -16.18748 -16.00700 -15.78998 -15.38419 -15.37477 -14.81771 -14.62591 -14.35686 -14.25076 -14.00019 -13.65523 -13.46330 -13.41477 -13.38179 -13.13402 -12.78786 -12.37864 -12.11104 -12.07159 -11.85544 -11.78779 -11.72348 -11.47439 -11.42711 -11.41348 -11.27089 -11.07143 -10.93956 -10.44102 -10.25366 -10.20749 -9.49903 -9.43458 -9.28856 -8.99893 -8.47284 -8.07513 -7.95876 -6.41405 -3.82376 0.41541 0.90001 2.49781 2.79841 3.20334 3.26081 3.30443 3.42592 3.83669 3.91005 4.00233 4.08189 4.29367 4.33549 4.45967 4.48328 4.59070 4.71615 4.80377 4.82302 4.94604 5.04170 5.10787 5.14266 5.17417 5.21789 5.26226 5.27768 5.35189 5.42417 5.49165 5.50849 5.59464 5.61745 5.65013 5.79236 5.83827 5.88904 5.95658 5.98446 6.02171 6.10405 6.14150 6.26996 6.41526 7.17099 7.18924 7.55160 7.64144 7.89608 8.06240 8.61496 9.17886 9.54473 10.05937 10.76253 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.037650 B = 0.001204 C = 0.001169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.509137 B =23252.205291 C =23937.989023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.301 4.301 8 H 0.102 0.898 9 N -0.563 5.563 10 C 0.440 3.560 11 O -0.584 6.584 12 C 0.051 3.949 13 N -0.670 5.670 14 C 0.063 3.937 15 C -0.130 4.130 16 C 0.120 3.880 17 N -0.724 5.724 18 C 0.558 3.442 19 O -0.538 6.538 20 C -0.134 4.134 21 C -0.085 4.085 22 C -0.114 4.114 23 C -0.074 4.074 24 C -0.107 4.107 25 C -0.047 4.047 26 C -0.083 4.083 27 C -0.121 4.121 28 C -0.086 4.086 29 H 0.272 0.728 30 H 0.392 0.608 31 H 0.044 0.956 32 H 0.087 0.913 33 H 0.349 0.651 34 H 0.030 0.970 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.401 0.599 41 H 0.130 0.870 42 H 0.128 0.872 43 H 0.134 0.866 44 H 0.078 0.922 45 H 0.082 0.918 46 H 0.073 0.927 47 H 0.078 0.922 48 H 0.078 0.922 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.695 -34.831 -0.983 35.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.431 4.431 8 H 0.120 0.880 9 N -0.199 5.199 10 C 0.226 3.774 11 O -0.469 6.469 12 C -0.082 4.082 13 N -0.302 5.302 14 C -0.068 4.068 15 C -0.168 4.168 16 C -0.003 4.003 17 N -0.376 5.376 18 C 0.346 3.654 19 O -0.416 6.416 20 C -0.137 4.137 21 C -0.104 4.104 22 C -0.132 4.132 23 C -0.074 4.074 24 C -0.107 4.107 25 C -0.066 4.066 26 C -0.120 4.120 27 C -0.158 4.158 28 C -0.123 4.123 29 H 0.082 0.918 30 H 0.226 0.774 31 H 0.062 0.938 32 H 0.105 0.895 33 H 0.168 0.832 34 H 0.048 0.952 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.237 0.763 41 H 0.147 0.853 42 H 0.146 0.854 43 H 0.152 0.848 44 H 0.096 0.904 45 H 0.101 0.899 46 H 0.092 0.908 47 H 0.097 0.903 48 H 0.097 0.903 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 7.583 -34.789 -0.301 35.607 hybrid contribution -0.126 1.130 -0.878 1.437 sum 7.457 -33.659 -1.179 34.495 Atomic orbital electron populations 1.69606 1.05944 1.28275 1.50476 1.25259 0.95624 0.99706 0.97264 0.85917 0.78766 0.80455 0.79073 1.19925 1.20964 1.19869 1.19663 0.93360 0.82270 1.47777 0.87971 1.41854 1.09210 1.04588 1.64297 1.19811 0.88385 0.84739 0.84511 1.90517 1.13771 1.87086 1.55497 1.21671 0.94343 0.90902 1.01294 1.60048 1.18905 0.99902 1.51342 1.21825 0.95314 0.88759 1.00868 1.21751 0.99020 0.92312 1.03698 1.21368 0.91277 0.84913 1.02775 1.45916 1.10752 1.05558 1.75369 1.18233 0.88204 0.82656 0.76320 1.90782 1.17059 1.84002 1.49722 1.19784 0.93321 0.93665 1.06941 1.21207 0.91863 0.99427 0.97868 1.20575 0.99928 0.91099 1.01638 1.20879 0.94960 0.94519 0.97029 1.20572 0.93515 0.95650 1.00985 1.20700 1.00188 0.90217 0.95497 1.21066 0.98473 0.90004 1.02420 1.22303 0.93866 0.97988 1.01685 1.21139 0.97921 0.90862 1.02414 0.91807 0.77432 0.93808 0.89529 0.83197 0.95198 0.90728 0.90067 0.91216 0.91243 0.90987 0.76349 0.85264 0.85430 0.84802 0.90388 0.89939 0.90784 0.90288 0.90318 0.89766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.60 13.05 55.50 0.72 -23.87 16 2 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 3 Si 0.93 21.07 29.55 -169.99 -5.02 16.05 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.30 -8.44 9.68 -14.93 -0.14 -8.59 16 8 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 9 N -0.56 -14.34 5.29 -10.96 -0.06 -14.40 16 10 C 0.44 10.44 7.82 -10.99 -0.09 10.35 16 11 O -0.58 -15.90 15.78 5.54 0.09 -15.81 16 12 C 0.05 0.89 6.17 -4.97 -0.03 0.86 16 13 N -0.67 -10.58 6.13 -115.05 -0.70 -11.28 16 14 C 0.06 0.73 5.69 -3.82 -0.02 0.71 16 15 C -0.13 -1.22 5.59 -26.73 -0.15 -1.37 16 16 C 0.12 1.14 5.67 -4.04 -0.02 1.11 16 17 N -0.72 -6.44 5.51 -61.25 -0.34 -6.78 16 18 C 0.56 6.25 7.77 -12.33 -0.10 6.15 16 19 O -0.54 -7.93 16.35 5.32 0.09 -7.85 16 20 C -0.13 -1.26 5.87 -105.01 -0.62 -1.87 16 21 C -0.08 -0.61 9.54 -39.23 -0.37 -0.98 16 22 C -0.11 -0.75 10.02 -39.58 -0.40 -1.14 16 23 C -0.07 -0.50 6.14 -104.06 -0.64 -1.14 16 24 C -0.11 -0.81 6.13 -104.23 -0.64 -1.45 16 25 C -0.05 -0.43 9.59 -39.14 -0.38 -0.81 16 26 C -0.08 -0.43 6.77 -26.84 -0.18 -0.61 16 27 C -0.12 -0.46 7.08 -25.33 -0.18 -0.64 16 28 C -0.09 -0.38 6.77 -26.83 -0.18 -0.56 16 29 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.39 9.54 7.90 -40.82 -0.32 9.22 16 31 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 33 H 0.35 5.62 8.43 -39.29 -0.33 5.29 16 34 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.40 2.56 6.51 -40.82 -0.27 2.30 16 41 H 0.13 0.62 6.41 -52.49 -0.34 0.28 16 42 H 0.13 0.57 8.06 -52.49 -0.42 0.14 16 43 H 0.13 1.27 7.64 -52.49 -0.40 0.87 16 44 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 47 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 48 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 49 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 409.18 15.07 6.17 6.17 Total: -1.00 -34.39 409.18 -10.80 -45.18 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: -7.51 Total: 12.05 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: -4.23 Total: 0.55 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: -0.38 Total: -56.33 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: 0.17 Total: -23.66 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -34.39 -10.80 -45.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175766755.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.766 kcal (2) G-P(sol) polarization free energy of solvation -34.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds