Wall clock time and date at job start Sat Apr 11 2020 07:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35979 * 116.99855 * 2 1 4 4 C 1.38714 * 120.07157 * 359.97438 * 3 2 1 5 5 C 1.37953 * 119.90139 * 179.97438 * 4 3 2 6 6 C 1.39124 * 120.28996 * 359.96392 * 5 4 3 7 7 C 1.38352 * 119.78760 * 0.20848 * 6 5 4 8 8 C 1.38505 * 119.87909 * 359.73671 * 7 6 5 9 9 C 1.50776 * 121.40443 * 179.45223 * 7 6 5 10 10 C 1.53109 * 109.66868 * 18.14482 * 9 7 6 11 11 H 1.08998 * 109.73983 * 71.36255 * 10 9 7 12 12 C 1.50702 * 109.68285 * 191.97364 * 10 9 7 13 13 O 1.21279 * 120.00190 * 358.80193 * 12 10 9 14 14 N 1.34777 * 119.99997 * 178.80140 * 12 10 9 15 15 C 1.46501 * 120.00111 * 180.02562 * 14 12 10 16 16 H 1.08996 * 109.41472 * 35.14003 * 15 14 12 17 17 C 1.52962 * 109.41050 * 155.00205 * 15 14 12 18 18 C 1.53233 * 109.39936 * 183.70575 * 17 15 14 19 19 C 1.51269 * 108.53474 * 305.36560 * 18 17 15 20 20 C 1.37869 * 120.85106 * 231.32538 * 19 18 17 21 21 N 1.31520 * 120.00292 * 0.02562 * 20 19 18 22 22 Si 1.86806 * 119.99986 * 180.02562 * 20 19 18 23 23 H 1.48503 * 109.47131 * 90.00539 * 22 20 19 24 24 H 1.48501 * 109.47125 * 210.00377 * 22 20 19 25 25 H 1.48499 * 109.47204 * 330.00374 * 22 20 19 26 26 C 1.51275 * 118.29665 * 51.35540 * 19 18 17 27 27 C 1.52960 * 109.41213 * 275.35214 * 15 14 12 28 28 C 1.53402 * 108.27230 * 311.64933 * 10 9 7 29 29 O 1.35946 * 118.43875 * 180.50192 * 6 5 4 30 30 H 1.08995 * 109.47248 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46869 * 299.99895 * 1 2 3 32 32 H 1.09003 * 109.47073 * 59.99858 * 1 2 3 33 33 H 1.07999 * 120.05123 * 359.90930 * 4 3 2 34 34 H 1.08001 * 119.85340 * 179.97438 * 5 4 3 35 35 H 1.07998 * 119.86044 * 180.16872 * 8 7 6 36 36 H 1.08996 * 109.43827 * 138.17195 * 9 7 6 37 37 H 1.08997 * 109.43700 * 258.04304 * 9 7 6 38 38 H 0.97004 * 119.99658 * 359.97438 * 14 12 10 39 39 H 1.09000 * 109.48178 * 303.67520 * 17 15 14 40 40 H 1.08993 * 109.48362 * 63.72410 * 17 15 14 41 41 H 1.08997 * 109.62551 * 65.08479 * 18 17 15 42 42 H 1.09001 * 109.62526 * 185.46753 * 18 17 15 43 43 H 0.96993 * 120.00087 * 179.97438 * 21 20 19 44 44 H 1.08995 * 109.62480 * 68.36323 * 26 19 18 45 45 H 1.09001 * 109.62152 * 188.74444 * 26 19 18 46 46 H 1.08999 * 109.47850 * 296.27927 * 27 15 14 47 47 H 1.08997 * 109.48196 * 56.31306 * 27 15 14 48 48 H 1.08992 * 109.68449 * 304.99322 * 28 10 9 49 49 H 1.08999 * 109.71371 * 184.45106 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2923 2.3759 -0.0005 5 6 1.9222 3.6032 0.0000 6 6 3.3114 3.6789 0.0018 7 6 4.0630 2.5174 -0.0012 8 6 3.4297 1.2857 -0.0006 9 6 5.5702 2.5570 -0.0117 10 6 6.0525 3.9410 0.4315 11 1 5.8716 4.0695 1.4986 12 6 7.5253 4.0811 0.1447 13 8 8.1384 3.1565 -0.3451 14 7 8.1611 5.2341 0.4325 15 6 9.5928 5.3706 0.1532 16 1 9.8382 4.8232 -0.7569 17 6 9.9353 6.8495 -0.0350 18 6 11.4127 6.9850 -0.4182 19 6 12.2474 6.2802 0.6281 20 6 13.3068 6.9197 1.2359 21 7 13.6025 8.1587 0.9086 22 14 14.3222 6.0264 2.5246 23 1 15.4496 5.3203 1.8644 24 1 14.8574 7.0087 3.5013 25 1 13.4670 5.0402 3.2324 26 6 11.8904 4.8554 0.9898 27 6 10.3957 4.7970 1.3219 28 6 5.2693 4.9985 -0.3569 29 8 3.8927 4.9078 0.0128 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 0.2136 2.3216 -0.0024 34 1 1.3343 4.5092 -0.0008 35 1 4.0167 0.3792 -0.0003 36 1 5.9577 1.8022 0.6725 37 1 5.9315 2.3519 -1.0194 38 1 7.6706 5.9739 0.8239 39 1 9.3145 7.2685 -0.8270 40 1 9.7501 7.3867 0.8951 41 1 11.5820 6.5257 -1.3921 42 1 11.6852 8.0397 -0.4584 43 1 14.3476 8.6088 1.3365 44 1 12.1040 4.1990 0.1463 45 1 12.4732 4.5405 1.8555 46 1 10.1996 5.3829 2.2199 47 1 10.1012 3.7615 1.4918 48 1 5.3753 4.8128 -1.4256 49 1 5.6490 5.9917 -0.1173 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180361759.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:32:56 Heat of formation + Delta-G solvation = -124.304304 kcal Electronic energy + Delta-G solvation = -29896.706465 eV Core-core repulsion = 25787.488174 eV Total energy + Delta-G solvation = -4109.218292 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.08301 -40.93258 -40.04667 -38.48117 -37.39830 -35.41531 -35.23309 -33.45759 -31.82337 -31.46255 -30.91599 -29.05539 -28.02864 -26.70076 -25.44218 -23.87458 -23.66429 -23.30101 -21.82751 -21.30800 -20.64164 -18.93126 -18.82387 -18.39330 -17.86849 -17.66296 -16.99053 -16.63719 -16.43652 -16.30321 -15.97319 -15.75497 -15.36450 -15.06111 -14.95076 -14.58791 -14.52712 -14.36172 -14.21309 -14.10609 -13.96585 -13.94143 -13.71170 -13.43583 -12.85257 -12.78812 -12.68788 -12.64373 -12.56362 -12.12376 -12.02392 -11.95034 -11.81879 -11.62329 -11.40420 -11.32687 -11.05709 -10.77862 -10.63256 -10.52730 -9.92576 -9.86707 -8.74076 -8.17100 -6.11146 0.19983 0.41608 1.38156 1.41635 1.48942 1.55666 2.05710 2.30541 2.40625 2.42899 2.68191 3.10625 3.40308 3.52325 3.65041 3.78714 3.87889 3.99992 4.04911 4.14791 4.22236 4.27905 4.40786 4.44147 4.45181 4.48603 4.50939 4.64358 4.71930 4.75184 4.83615 4.86624 4.90806 4.91603 4.97474 5.02023 5.07909 5.14493 5.24140 5.25188 5.30654 5.37235 5.53686 5.55947 5.58712 5.68375 5.76389 5.83452 6.28994 6.35138 6.51420 6.59875 6.94558 7.25510 7.47022 8.93155 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.029462 B = 0.001965 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.134314 B =14244.174310 C =14820.294794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.338 6.338 3 C 0.090 3.910 4 C -0.171 4.171 5 C -0.108 4.108 6 C 0.076 3.924 7 C -0.120 4.120 8 C -0.133 4.133 9 C -0.058 4.058 10 C -0.134 4.134 11 H 0.127 0.873 12 C 0.521 3.479 13 O -0.577 6.577 14 N -0.709 5.709 15 C 0.166 3.834 16 H 0.057 0.943 17 C -0.100 4.100 18 C 0.007 3.993 19 C -0.498 4.498 20 C 0.025 3.975 21 N -0.927 5.927 22 Si 0.936 3.064 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.252 1.252 26 C -0.022 4.022 27 C -0.106 4.106 28 C 0.074 3.926 29 O -0.313 6.313 30 H 0.115 0.885 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.162 0.838 34 H 0.153 0.847 35 H 0.134 0.866 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.413 0.587 39 H 0.062 0.938 40 H 0.058 0.942 41 H -0.004 1.004 42 H 0.034 0.966 43 H 0.263 0.737 44 H 0.012 0.988 45 H 0.035 0.965 46 H 0.056 0.944 47 H 0.039 0.961 48 H 0.069 0.931 49 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.237 -9.746 -0.001 30.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.253 6.253 3 C 0.045 3.955 4 C -0.190 4.190 5 C -0.127 4.127 6 C 0.031 3.969 7 C -0.121 4.121 8 C -0.152 4.152 9 C -0.095 4.095 10 C -0.156 4.156 11 H 0.145 0.855 12 C 0.308 3.692 13 O -0.456 6.456 14 N -0.360 5.360 15 C 0.062 3.938 16 H 0.075 0.925 17 C -0.138 4.138 18 C -0.031 4.031 19 C -0.517 4.517 20 C -0.173 4.173 21 N -0.567 5.567 22 Si 0.763 3.237 23 H -0.205 1.205 24 H -0.216 1.216 25 H -0.176 1.176 26 C -0.060 4.060 27 C -0.145 4.145 28 C -0.001 4.001 29 O -0.227 6.227 30 H 0.134 0.866 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.179 0.821 34 H 0.170 0.830 35 H 0.151 0.849 36 H 0.105 0.895 37 H 0.098 0.902 38 H 0.250 0.750 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.015 0.985 42 H 0.052 0.948 43 H 0.072 0.928 44 H 0.030 0.970 45 H 0.053 0.947 46 H 0.075 0.925 47 H 0.058 0.942 48 H 0.088 0.912 49 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -28.689 -10.254 -0.267 30.468 hybrid contribution 1.054 0.020 0.644 1.235 sum -27.635 -10.234 0.378 29.472 Atomic orbital electron populations 1.23345 0.76426 1.05518 1.02380 1.86063 1.23468 1.26580 1.89144 1.18953 0.92109 0.85079 0.99385 1.21304 1.01371 0.90604 1.05674 1.20650 0.91062 0.99094 1.01877 1.18821 0.92585 0.83857 1.01639 1.19623 0.95448 0.92303 1.04709 1.20245 0.92157 0.97608 1.05142 1.20253 0.89790 0.96088 1.03377 1.21951 0.90925 0.98311 1.04404 0.85513 1.20578 0.89292 0.82166 0.77183 1.90705 1.69111 1.40366 1.45427 1.46156 1.10252 1.16011 1.63587 1.20646 0.78727 0.97080 0.97379 0.92474 1.21692 0.97910 0.93399 1.00838 1.19310 0.91918 0.97620 0.94249 1.20589 1.12682 0.97336 1.21073 1.25545 0.97841 0.95294 0.98657 1.69950 1.29763 1.12627 1.44372 0.85878 0.79170 0.78680 0.79988 1.20467 1.21624 1.17648 1.19798 0.93830 0.95608 0.96774 1.21764 0.96540 0.98292 0.97883 1.23025 0.78255 1.00217 0.98602 1.86035 1.26118 1.26221 1.84357 0.86634 0.91520 0.91548 0.82103 0.82960 0.84852 0.89464 0.90154 0.74979 0.91907 0.92279 0.98515 0.94764 0.92781 0.96956 0.94655 0.92546 0.94230 0.91247 0.84492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 113.37 1.11 1.25 16 2 O -0.34 -5.89 10.50 -93.31 -0.98 -6.87 16 3 C 0.09 1.68 6.68 22.45 0.15 1.83 16 4 C -0.17 -2.55 9.03 22.32 0.20 -2.35 16 5 C -0.11 -1.80 9.93 22.41 0.22 -1.58 16 6 C 0.08 1.54 6.47 22.51 0.15 1.68 16 7 C -0.12 -2.56 5.75 -19.75 -0.11 -2.67 16 8 C -0.13 -2.78 9.60 22.40 0.22 -2.56 16 9 C -0.06 -1.29 4.65 29.91 0.14 -1.15 16 10 C -0.13 -2.75 2.76 -11.37 -0.03 -2.78 16 11 H 0.13 2.25 8.14 -2.39 -0.02 2.23 16 12 C 0.52 14.51 7.12 87.66 0.62 15.13 16 13 O -0.58 -21.30 15.47 -3.03 -0.05 -21.34 16 14 N -0.71 -19.03 4.95 -442.66 -2.19 -21.22 16 15 C 0.17 5.98 2.35 44.97 0.11 6.09 16 16 H 0.06 2.35 7.58 -2.39 -0.02 2.33 16 17 C -0.10 -3.76 5.40 30.66 0.17 -3.59 16 18 C 0.01 0.34 5.96 30.11 0.18 0.52 16 19 C -0.50 -25.79 5.51 -16.17 -0.09 -25.88 16 20 C 0.03 1.37 5.46 84.65 0.46 1.83 16 21 N -0.93 -53.36 12.74 21.45 0.27 -53.08 16 22 Si 0.94 42.97 27.53 68.60 1.89 44.86 16 23 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 24 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 25 H -0.25 -10.94 6.11 99.48 0.61 -10.33 16 26 C -0.02 -1.02 5.59 30.11 0.17 -0.85 16 27 C -0.11 -4.22 5.50 30.66 0.17 -4.05 16 28 C 0.07 1.30 6.25 72.12 0.45 1.75 16 29 O -0.31 -6.15 10.27 -92.94 -0.95 -7.10 16 30 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.07 0.38 7.67 -2.39 -0.02 0.37 16 32 H 0.07 0.39 7.66 -2.39 -0.02 0.37 16 33 H 0.16 1.38 6.31 -2.91 -0.02 1.36 16 34 H 0.15 1.89 8.06 -2.91 -0.02 1.86 16 35 H 0.13 2.66 8.06 -2.91 -0.02 2.64 16 36 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.08 2.00 7.72 -2.39 -0.02 1.98 16 38 H 0.41 8.16 8.00 -92.70 -0.74 7.42 16 39 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 42 H 0.03 1.82 7.08 -2.39 -0.02 1.80 16 43 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 44 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 45 H 0.04 1.62 4.59 -2.39 -0.01 1.60 16 46 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 47 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 48 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 49 H 0.14 1.72 7.50 -2.39 -0.02 1.70 16 Total: -1.00 -68.12 385.57 2.40 -65.72 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: 0.13 Total: 16.43 kcal Atomic # 6 Polarization: -21.66 SS G_CDS: 4.28 Total: -17.39 kcal Atomic # 7 Polarization: -72.38 SS G_CDS: -1.92 Total: -74.30 kcal Atomic # 8 Polarization: -33.34 SS G_CDS: -1.98 Total: -35.32 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 1.89 Total: 44.86 kcal Total: -68.12 2.40 -65.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180361759.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.583 kcal (2) G-P(sol) polarization free energy of solvation -68.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds