Wall clock time and date at job start Sat Apr 11 2020 07:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35991 * 117.00313 * 2 1 4 4 C 1.38410 * 119.93653 * 359.97438 * 3 2 1 5 5 C 1.38250 * 119.89664 * 179.97438 * 4 3 2 6 6 C 1.38105 * 120.01972 * 0.05548 * 5 4 3 7 7 C 1.38604 * 120.41853 * 0.09477 * 6 5 4 8 8 C 1.38223 * 119.86129 * 359.74368 * 7 6 5 9 9 O 1.35936 * 121.82544 * 180.31926 * 8 7 6 10 10 C 1.42838 * 117.85563 * 342.78357 * 9 8 7 11 11 C 1.53400 * 108.36479 * 49.13826 * 10 9 8 12 12 H 1.09001 * 109.69921 * 55.05648 * 11 10 9 13 13 C 1.50697 * 109.69883 * 175.61552 * 11 10 9 14 14 O 1.21280 * 120.00532 * 120.00085 * 13 11 10 15 15 N 1.34780 * 120.00061 * 299.99461 * 13 11 10 16 16 C 1.46494 * 120.00038 * 179.97438 * 15 13 11 17 17 H 1.09001 * 109.35691 * 35.18170 * 16 15 13 18 18 C 1.52965 * 109.41185 * 155.00713 * 16 15 13 19 19 C 1.53229 * 109.41314 * 183.71233 * 18 16 15 20 20 C 1.51260 * 108.53957 * 305.36317 * 19 18 16 21 21 C 1.37877 * 120.85316 * 231.33014 * 20 19 18 22 22 N 1.31513 * 120.00005 * 359.97438 * 21 20 19 23 23 Si 1.86803 * 120.00258 * 179.97438 * 21 20 19 24 24 H 1.48500 * 109.46664 * 89.99823 * 23 21 20 25 25 H 1.48495 * 109.47129 * 209.99579 * 23 21 20 26 26 H 1.48493 * 109.47033 * 330.00040 * 23 21 20 27 27 C 1.51268 * 118.29991 * 51.34962 * 20 19 18 28 28 C 1.52991 * 109.43688 * 275.35037 * 16 15 13 29 29 C 1.50772 * 118.73093 * 179.53452 * 7 6 5 30 30 H 1.09007 * 109.46740 * 59.99484 * 1 2 3 31 31 H 1.08991 * 109.47000 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46825 * 300.00354 * 1 2 3 33 33 H 1.07999 * 120.05716 * 359.97438 * 4 3 2 34 34 H 1.07994 * 119.98946 * 180.08831 * 5 4 3 35 35 H 1.07994 * 119.79293 * 180.02562 * 6 5 4 36 36 H 1.09002 * 109.68118 * 289.41664 * 10 9 8 37 37 H 1.09000 * 109.71753 * 168.87807 * 10 9 8 38 38 H 0.97000 * 119.99611 * 0.02562 * 15 13 11 39 39 H 1.09002 * 109.48383 * 63.72453 * 18 16 15 40 40 H 1.08999 * 109.47882 * 303.69816 * 18 16 15 41 41 H 1.09000 * 109.62841 * 65.08371 * 19 18 16 42 42 H 1.09005 * 109.62497 * 185.64969 * 19 18 16 43 43 H 0.96994 * 120.00734 * 180.02562 * 22 21 20 44 44 H 1.09000 * 109.62599 * 68.36676 * 27 20 19 45 45 H 1.09004 * 109.62527 * 188.74895 * 27 20 19 46 46 H 1.09005 * 109.47498 * 56.32155 * 28 16 15 47 47 H 1.08997 * 109.48700 * 296.29688 * 28 16 15 48 48 H 1.09001 * 109.44151 * 42.26525 * 29 7 6 49 49 H 1.09000 * 109.43433 * 282.39061 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2914 2.3717 -0.0005 5 6 1.9200 3.6030 0.0000 6 6 3.2992 3.6747 -0.0001 7 6 4.0621 2.5175 -0.0027 8 6 3.4401 1.2832 0.0001 9 8 4.1489 0.1233 0.0042 10 6 5.5267 0.1818 -0.3683 11 6 6.1935 1.3144 0.4227 12 1 6.0301 1.1630 1.4897 13 6 7.6723 1.3340 0.1332 14 8 8.1818 2.3208 -0.3541 15 7 8.4287 0.2548 0.4158 16 6 9.8661 0.2737 0.1338 17 1 10.2557 1.2763 0.3097 18 6 10.5781 -0.7176 1.0559 19 6 12.0906 -0.6311 0.8259 20 6 12.3659 -0.8416 -0.6465 21 6 13.2934 -1.7713 -1.0665 22 7 13.9523 -2.4885 -0.1827 23 14 13.6142 -2.0123 -2.8909 24 1 14.7004 -1.0985 -3.3274 25 1 14.0203 -3.4187 -3.1406 26 1 12.3771 -1.7112 -3.6550 27 6 11.5980 -0.0057 -1.6464 28 6 10.1035 -0.1149 -1.3268 29 6 5.5647 2.6401 -0.0134 30 1 -0.3633 0.5140 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 0.2129 2.3151 -0.0014 34 1 1.3323 4.5091 0.0010 35 1 3.7864 4.6385 0.0008 36 1 5.6099 0.3815 -1.4366 37 1 6.0118 -0.7655 -0.1330 38 1 8.0211 -0.5345 0.8052 39 1 10.2344 -1.7287 0.8375 40 1 10.3537 -0.4737 2.0943 41 1 12.4514 0.3518 1.1290 42 1 12.5940 -1.4040 1.4066 43 1 14.6050 -3.1423 -0.4780 44 1 11.9132 1.0351 -1.5722 45 1 11.7877 -0.3747 -2.6544 46 1 9.5426 0.5564 -1.9772 47 1 9.7709 -1.1401 -1.4890 48 1 5.8693 3.4294 0.6739 49 1 5.9013 2.8871 -1.0203 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180404347.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:33:11 Heat of formation + Delta-G solvation = -103.565077 kcal Electronic energy + Delta-G solvation = -30233.069464 eV Core-core repulsion = 26124.750493 eV Total energy + Delta-G solvation = -4108.318971 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -41.28732 -39.85043 -38.78764 -37.17969 -36.84141 -34.01353 -33.78150 -31.76508 -30.92841 -30.03263 -29.68264 -27.65398 -27.27595 -25.85476 -24.59622 -22.67822 -22.16174 -21.54053 -20.80673 -19.76184 -19.40269 -18.43914 -17.77805 -17.09846 -16.89579 -16.14213 -15.99302 -15.65060 -15.34845 -15.26089 -14.79990 -14.49459 -14.44947 -14.09925 -13.79851 -13.50778 -13.34782 -13.30151 -13.12109 -12.75227 -12.38443 -12.32278 -12.11332 -12.03178 -11.89957 -11.63417 -11.41826 -11.18176 -11.04480 -11.01363 -10.93500 -10.83201 -10.71164 -10.21438 -10.03029 -9.68153 -9.53148 -9.02835 -8.88854 -8.77752 -8.51223 -8.34727 -8.09494 -6.12343 -4.03324 0.98078 1.16265 2.73244 2.95981 3.00841 3.26591 3.34926 3.35985 3.36421 3.47325 4.30543 4.36874 4.41193 4.53125 4.59112 4.70114 4.77195 4.82535 4.83054 4.98189 5.04665 5.15202 5.15964 5.21915 5.28483 5.35857 5.40844 5.69694 5.71799 5.83041 5.85834 5.89356 6.08933 6.15875 6.24471 6.38172 6.42524 6.44935 6.68070 6.71942 6.80850 6.85972 6.93374 7.08357 7.20290 7.33953 7.41023 7.62568 7.68104 7.71894 7.86058 8.35677 8.43564 8.93937 9.52455 10.97067 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.022158 B = 0.002155 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.344382 B =12988.088199 C =13368.897774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.306 6.306 3 C 0.102 3.898 4 C -0.185 4.185 5 C -0.111 4.111 6 C -0.120 4.120 7 C -0.118 4.118 8 C 0.100 3.900 9 O -0.299 6.299 10 C 0.072 3.928 11 C -0.149 4.149 12 H 0.110 0.890 13 C 0.518 3.482 14 O -0.536 6.536 15 N -0.721 5.721 16 C 0.153 3.847 17 H 0.079 0.921 18 C -0.114 4.114 19 C 0.013 3.987 20 C -0.488 4.488 21 C 0.076 3.924 22 N -0.890 5.890 23 Si 0.887 3.113 24 H -0.278 1.278 25 H -0.290 1.290 26 H -0.264 1.264 27 C -0.019 4.019 28 C -0.112 4.112 29 C -0.059 4.059 30 H 0.054 0.946 31 H 0.100 0.900 32 H 0.054 0.946 33 H 0.133 0.867 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.072 0.928 37 H 0.115 0.885 38 H 0.394 0.606 39 H 0.055 0.945 40 H 0.035 0.965 41 H 0.006 0.994 42 H 0.061 0.939 43 H 0.264 0.736 44 H 0.019 0.981 45 H 0.036 0.964 46 H 0.036 0.964 47 H 0.051 0.949 48 H 0.092 0.908 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.596 7.257 1.930 27.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.219 6.219 3 C 0.057 3.943 4 C -0.204 4.204 5 C -0.129 4.129 6 C -0.138 4.138 7 C -0.119 4.119 8 C 0.055 3.945 9 O -0.213 6.213 10 C -0.003 4.003 11 C -0.171 4.171 12 H 0.128 0.872 13 C 0.302 3.698 14 O -0.413 6.413 15 N -0.371 5.371 16 C 0.051 3.949 17 H 0.097 0.903 18 C -0.153 4.153 19 C -0.025 4.025 20 C -0.507 4.507 21 C -0.127 4.127 22 N -0.528 5.528 23 Si 0.715 3.285 24 H -0.204 1.204 25 H -0.217 1.217 26 H -0.189 1.189 27 C -0.057 4.057 28 C -0.151 4.151 29 C -0.096 4.096 30 H 0.072 0.928 31 H 0.118 0.882 32 H 0.072 0.928 33 H 0.151 0.849 34 H 0.145 0.855 35 H 0.146 0.854 36 H 0.090 0.910 37 H 0.133 0.867 38 H 0.228 0.772 39 H 0.073 0.927 40 H 0.054 0.946 41 H 0.024 0.976 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.037 0.963 45 H 0.054 0.946 46 H 0.055 0.945 47 H 0.070 0.930 48 H 0.110 0.890 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -26.040 7.424 1.653 27.128 hybrid contribution -0.134 -0.333 -0.764 0.844 sum -26.174 7.091 0.889 27.132 Atomic orbital electron populations 1.23061 0.78690 1.03972 1.01107 1.86185 1.20877 1.25960 1.88899 1.18425 0.89290 0.85207 1.01403 1.21019 0.99844 0.91672 1.07832 1.20797 0.94407 0.96996 1.00733 1.20843 0.93526 0.97549 1.01886 1.19728 0.96241 0.91682 1.04245 1.17932 0.87939 0.85740 1.02888 1.86128 1.22922 1.28321 1.83921 1.22958 0.79179 0.99265 0.98940 1.22052 0.93728 0.98070 1.03230 0.87158 1.20065 0.87672 0.83542 0.78500 1.90707 1.73991 1.33016 1.43612 1.46476 1.10658 1.16379 1.63590 1.21106 0.76682 1.00811 0.96337 0.90331 1.21935 1.00483 0.97469 0.95387 1.19341 0.89097 0.97437 0.96649 1.20041 1.20343 1.19117 0.91188 1.24846 0.95262 0.95053 0.97519 1.69826 1.25524 1.23851 1.33600 0.86678 0.78702 0.77130 0.85963 1.20392 1.21667 1.18948 1.19789 0.91424 0.97407 0.97106 1.21886 0.99588 0.99431 0.94185 1.20323 0.88539 0.96454 1.04265 0.92787 0.88209 0.92773 0.84940 0.85538 0.85376 0.90984 0.86747 0.77203 0.92659 0.94586 0.97560 0.92054 0.92580 0.96307 0.94607 0.94546 0.93027 0.88992 0.88759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.31 -3.41 10.21 -35.80 -0.37 -3.77 16 3 C 0.10 1.16 6.70 -39.03 -0.26 0.90 16 4 C -0.18 -1.64 9.03 -39.51 -0.36 -2.00 16 5 C -0.11 -0.93 10.04 -39.63 -0.40 -1.33 16 6 C -0.12 -1.13 9.66 -39.50 -0.38 -1.51 16 7 C -0.12 -1.32 5.75 -104.46 -0.60 -1.92 16 8 C 0.10 1.24 6.48 -39.10 -0.25 0.99 16 9 O -0.30 -3.82 10.00 -35.62 -0.36 -4.18 16 10 C 0.07 0.80 6.26 37.36 0.23 1.03 16 11 C -0.15 -1.71 2.76 -91.53 -0.25 -1.97 16 12 H 0.11 1.15 8.14 -51.93 -0.42 0.72 16 13 C 0.52 7.70 7.12 -10.99 -0.08 7.63 16 14 O -0.54 -10.04 15.46 5.56 0.09 -9.95 16 15 N -0.72 -10.70 4.95 -53.83 -0.27 -10.97 16 16 C 0.15 2.89 2.35 -67.96 -0.16 2.73 16 17 H 0.08 1.65 7.58 -51.93 -0.39 1.26 16 18 C -0.11 -2.26 5.40 -26.63 -0.14 -2.41 16 19 C 0.01 0.31 5.97 -27.49 -0.16 0.14 16 20 C -0.49 -12.62 5.51 -98.93 -0.55 -13.17 16 21 C 0.08 2.04 5.46 -17.82 -0.10 1.95 16 22 N -0.89 -25.20 12.73 55.43 0.71 -24.49 16 23 Si 0.89 20.94 27.53 -169.99 -4.68 16.26 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.26 -6.05 6.11 56.52 0.35 -5.70 16 27 C -0.02 -0.45 5.59 -27.49 -0.15 -0.60 16 28 C -0.11 -2.30 5.50 -26.62 -0.15 -2.44 16 29 C -0.06 -0.67 4.65 -27.81 -0.13 -0.79 16 30 H 0.05 0.27 7.66 -51.92 -0.40 -0.12 16 31 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.27 7.66 -51.93 -0.40 -0.13 16 33 H 0.13 0.83 6.28 -52.49 -0.33 0.50 16 34 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 35 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.11 1.06 7.50 -51.93 -0.39 0.67 16 38 H 0.39 4.72 8.00 -40.82 -0.33 4.39 16 39 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16 42 H 0.06 1.62 7.07 -51.93 -0.37 1.25 16 43 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.04 0.84 4.59 -51.93 -0.24 0.60 16 46 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 48 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 49 H 0.09 1.16 7.71 -51.93 -0.40 0.76 16 LS Contribution 385.15 15.07 5.80 5.80 Total: -1.00 -31.63 385.15 -9.47 -41.11 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -7.50 Total: 1.81 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: -2.90 Total: -11.62 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: 0.44 Total: -35.46 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: -0.64 Total: -17.90 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.68 Total: 16.26 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.63 -9.47 -41.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180404347.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.457 kcal (2) G-P(sol) polarization free energy of solvation -31.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds