Wall clock time and date at job start Sat Apr 11 2020 07:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46903 * 111.00331 * 2 1 4 4 C 1.50702 * 109.46760 * 66.04477 * 3 2 1 5 5 O 1.21287 * 120.00288 * 0.02562 * 4 3 2 6 6 N 1.34779 * 119.99633 * 179.97438 * 4 3 2 7 7 C 1.37097 * 119.99657 * 180.02562 * 6 4 3 8 8 H 1.08000 * 120.00222 * 359.97438 * 7 6 4 9 9 C 1.38954 * 119.99821 * 180.02562 * 7 6 4 10 10 N 1.31405 * 120.00105 * 180.02562 * 9 7 6 11 11 Si 1.86804 * 119.99802 * 359.97438 * 9 7 6 12 12 H 1.48496 * 109.47231 * 90.00853 * 11 9 7 13 13 H 1.48509 * 109.47054 * 210.00279 * 11 9 7 14 14 H 1.48494 * 109.47386 * 330.00073 * 11 9 7 15 15 C 1.46904 * 110.99938 * 236.04638 * 2 1 3 16 16 H 1.08998 * 110.88613 * 63.56954 * 15 2 1 17 17 C 1.55152 * 111.00400 * 299.68734 * 15 2 1 18 18 C 1.54323 * 102.94050 * 206.38468 * 17 15 2 19 19 N 1.47016 * 107.27348 * 22.19368 * 18 17 15 20 20 C 1.34778 * 125.64890 * 181.02349 * 19 18 17 21 21 O 1.21290 * 119.99956 * 180.02562 * 20 19 18 22 22 C 1.50700 * 120.00125 * 0.02562 * 20 19 18 23 23 C 1.53784 * 113.61311 * 180.02562 * 22 20 19 24 24 C 1.53787 * 87.07851 * 220.01760 * 23 22 20 25 25 F 1.39897 * 113.61095 * 139.98181 * 24 23 22 26 26 F 1.39897 * 113.61330 * 270.79983 * 24 23 22 27 27 C 1.53783 * 87.17004 * 25.39307 * 24 23 22 28 28 C 1.47430 * 108.70349 * 1.28457 * 19 18 17 29 29 H 1.08997 * 109.47000 * 189.84361 * 1 2 3 30 30 H 1.08999 * 109.46943 * 309.84260 * 1 2 3 31 31 H 1.08996 * 109.47306 * 69.83999 * 1 2 3 32 32 H 1.08994 * 109.47600 * 186.05087 * 3 2 1 33 33 H 1.09003 * 109.47212 * 306.04914 * 3 2 1 34 34 H 0.96998 * 120.00248 * 0.02562 * 6 4 3 35 35 H 0.97005 * 120.00506 * 179.97438 * 10 9 7 36 36 H 1.08997 * 110.72038 * 88.02305 * 17 15 2 37 37 H 1.09003 * 110.71824 * 324.74697 * 17 15 2 38 38 H 1.09000 * 109.88482 * 262.77606 * 18 17 15 39 39 H 1.09002 * 109.88394 * 141.61384 * 18 17 15 40 40 H 1.08998 * 112.90368 * 311.25153 * 22 20 19 41 41 H 1.09002 * 113.61445 * 105.46794 * 23 22 20 42 42 H 1.08999 * 113.69346 * 334.57799 * 23 22 20 43 43 H 1.08994 * 113.61656 * 89.15774 * 27 24 23 44 44 H 1.09001 * 113.60861 * 220.06143 * 27 24 23 45 45 H 1.08999 * 110.36584 * 94.48261 * 28 19 18 46 46 H 1.08998 * 110.37031 * 216.80340 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 1.2985 5 8 1.0054 1.4453 2.1411 6 7 2.0190 3.3198 1.5238 7 6 1.6932 3.9343 2.7052 8 1 1.1302 3.3987 3.4552 9 6 2.0866 5.2466 2.9373 10 7 1.7749 5.8355 4.0699 11 14 3.0599 6.1733 1.6397 12 1 2.1234 6.8775 0.7276 13 1 3.9468 7.1645 2.3002 14 1 3.8834 5.2146 0.8601 15 6 1.9954 -0.7660 -1.1376 16 1 1.7115 -0.3029 -2.0826 17 6 1.5250 -2.2433 -1.0787 18 6 2.6363 -2.9907 -1.8454 19 7 3.8376 -2.1440 -1.8083 20 6 5.0214 -2.4344 -2.3834 21 8 5.9487 -1.6584 -2.2877 22 6 5.1930 -3.7232 -3.1453 23 6 6.5998 -3.9051 -3.7392 24 6 5.9124 -4.4817 -4.9882 25 9 6.4986 -4.0711 -6.1902 26 9 5.7084 -5.8644 -4.9276 27 6 4.6748 -3.6585 -4.5936 28 6 3.5347 -0.9274 -1.0325 29 1 -0.3633 -1.0125 0.1757 30 1 -0.3633 0.6584 0.7890 31 1 -0.3634 0.3542 -0.9647 32 1 3.0797 1.3444 -0.1083 33 1 1.5611 1.9274 -0.8309 34 1 2.5243 3.8010 0.8500 35 1 2.0498 6.7515 4.2321 36 1 0.5641 -2.3623 -1.5793 37 1 1.4688 -2.5893 -0.0466 38 1 2.3291 -3.1532 -2.8785 39 1 2.8413 -3.9464 -1.3628 40 1 4.8364 -4.5929 -2.5935 41 1 7.2100 -4.6313 -3.2021 42 1 7.1226 -2.9664 -3.9226 43 1 4.6691 -2.6515 -5.0107 44 1 3.7331 -4.1860 -4.7453 45 1 3.8348 -1.0562 0.0074 46 1 4.0370 -0.0642 -1.4690 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189604325.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:33:14 Heat of formation + Delta-G solvation = -122.812608 kcal Electronic energy + Delta-G solvation = -30398.381367 eV Core-core repulsion = 25767.290981 eV Total energy + Delta-G solvation = -4631.090386 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -49.28845 -47.61233 -40.79127 -39.22210 -38.17431 -37.05422 -35.64961 -33.91115 -31.71103 -31.23121 -29.45303 -28.09881 -26.84513 -26.67178 -24.93037 -23.85535 -22.96542 -21.19164 -20.39820 -19.62222 -19.32136 -18.42412 -18.17845 -17.32761 -17.10789 -16.88103 -16.57678 -15.98271 -15.84848 -15.10228 -14.96400 -14.84467 -14.57737 -14.48709 -14.34747 -13.97543 -13.87411 -13.73771 -13.29665 -13.24803 -13.17910 -13.10752 -12.74995 -12.47198 -12.35730 -12.17589 -12.04271 -11.95735 -11.88457 -11.54592 -11.41635 -11.20542 -11.09778 -10.99957 -10.91926 -10.60281 -10.19451 -9.99095 -9.55555 -8.98885 -8.63461 -8.20837 -8.08428 -6.32699 -3.84185 2.15019 2.48113 2.91850 3.02633 3.06035 3.14844 3.23285 3.67681 3.69947 3.71654 3.75704 3.85813 4.09127 4.12115 4.33312 4.50072 4.64455 4.71670 4.78339 4.84011 4.88861 4.96437 4.98394 5.05666 5.18449 5.19375 5.20846 5.40238 5.50476 5.53434 5.54292 5.62875 5.72791 5.74665 5.79086 5.86274 5.93678 5.95785 6.39498 7.01638 7.11610 7.19806 7.56229 7.75997 8.12373 8.57987 8.93287 9.40567 9.80639 10.80241 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.018485 B = 0.002105 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.396220 B =13296.092388 C =14346.890435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.507 5.507 3 C 0.039 3.961 4 C 0.453 3.547 5 O -0.559 6.559 6 N -0.590 5.590 7 C -0.305 4.305 8 H 0.120 0.880 9 C 0.042 3.958 10 N -0.880 5.880 11 Si 0.878 3.122 12 H -0.271 1.271 13 H -0.276 1.276 14 H -0.269 1.269 15 C 0.069 3.931 16 H 0.056 0.944 17 C -0.123 4.123 18 C 0.101 3.899 19 N -0.613 5.613 20 C 0.542 3.458 21 O -0.532 6.532 22 C -0.129 4.129 23 C -0.143 4.143 24 C 0.256 3.744 25 F -0.187 7.187 26 F -0.178 7.178 27 C -0.148 4.148 28 C 0.111 3.889 29 H 0.065 0.935 30 H 0.097 0.903 31 H 0.016 0.984 32 H 0.090 0.910 33 H 0.050 0.950 34 H 0.370 0.630 35 H 0.273 0.727 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.127 0.873 41 H 0.101 0.899 42 H 0.127 0.873 43 H 0.117 0.883 44 H 0.103 0.897 45 H 0.086 0.914 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.056 -20.814 -20.238 29.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.231 5.231 3 C -0.093 4.093 4 C 0.238 3.762 5 O -0.441 6.441 6 N -0.229 5.229 7 C -0.433 4.433 8 H 0.138 0.862 9 C -0.161 4.161 10 N -0.520 5.520 11 Si 0.705 3.295 12 H -0.197 1.197 13 H -0.201 1.201 14 H -0.194 1.194 15 C -0.041 4.041 16 H 0.074 0.926 17 C -0.161 4.161 18 C -0.023 4.023 19 N -0.347 5.347 20 C 0.330 3.670 21 O -0.408 6.408 22 C -0.150 4.150 23 C -0.181 4.181 24 C 0.220 3.780 25 F -0.168 7.168 26 F -0.159 7.159 27 C -0.187 4.187 28 C -0.011 4.011 29 H 0.083 0.917 30 H 0.115 0.885 31 H 0.034 0.966 32 H 0.108 0.892 33 H 0.068 0.932 34 H 0.203 0.797 35 H 0.084 0.916 36 H 0.101 0.899 37 H 0.112 0.888 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.145 0.855 41 H 0.119 0.881 42 H 0.145 0.855 43 H 0.136 0.864 44 H 0.121 0.879 45 H 0.104 0.896 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.368 -20.880 -19.096 28.630 hybrid contribution 0.497 1.124 -1.783 2.166 sum 4.866 -19.756 -20.879 29.153 Atomic orbital electron populations 1.22529 0.85923 1.03139 1.00805 1.61592 1.09079 1.12615 1.39836 1.21959 1.00932 0.89161 0.97210 1.19562 0.85253 0.82440 0.88908 1.90533 1.42765 1.64056 1.46744 1.42219 1.50773 1.12010 1.17942 1.19417 1.33752 0.96201 0.93948 0.86233 1.25040 0.97829 0.96533 0.96734 1.69616 1.45694 1.13587 1.23139 0.86689 0.80517 0.80592 0.81716 1.19668 1.20134 1.19416 1.22838 0.93841 0.94436 0.92972 0.92589 1.22705 0.97376 0.93827 1.02217 1.22120 0.84802 0.94549 1.00781 1.48384 1.11320 1.22088 1.52955 1.19659 0.81157 0.87332 0.78848 1.90754 1.39297 1.50269 1.60477 1.22548 0.98569 0.98107 0.95782 1.24016 0.96849 1.04402 0.92808 1.21953 0.96266 0.77058 0.82742 1.93033 1.85422 1.89474 1.48825 1.93033 1.95450 1.30944 1.96431 1.24052 0.98171 1.02630 0.93815 1.22360 0.94605 0.87146 0.97017 0.91669 0.88475 0.96591 0.89205 0.93174 0.79713 0.91593 0.89877 0.88844 0.91206 0.90861 0.85523 0.88082 0.85485 0.86446 0.87865 0.89572 0.90282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 8.91 60.06 0.54 0.86 16 2 N -0.51 -7.26 4.40 -233.61 -1.03 -8.29 16 3 C 0.04 0.62 5.34 -4.97 -0.03 0.59 16 4 C 0.45 9.92 7.41 -10.98 -0.08 9.84 16 5 O -0.56 -14.33 13.97 5.55 0.08 -14.25 16 6 N -0.59 -13.80 5.09 -10.96 -0.06 -13.85 16 7 C -0.30 -8.48 10.16 -14.93 -0.15 -8.64 16 8 H 0.12 3.80 7.39 -52.49 -0.39 3.41 16 9 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 10 N -0.88 -25.54 13.96 55.50 0.77 -24.76 16 11 Si 0.88 19.29 27.74 -169.99 -4.71 14.57 16 12 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 13 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 14 H -0.27 -5.41 6.52 56.52 0.37 -5.04 16 15 C 0.07 0.73 2.71 -65.45 -0.18 0.55 16 16 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 17 C -0.12 -0.96 5.37 -24.90 -0.13 -1.09 16 18 C 0.10 0.64 6.45 -3.07 -0.02 0.62 16 19 N -0.61 -5.74 3.32 -170.38 -0.57 -6.30 16 20 C 0.54 5.49 7.38 -10.98 -0.08 5.41 16 21 O -0.53 -7.51 16.16 5.55 0.09 -7.42 16 22 C -0.13 -0.84 3.34 -90.87 -0.30 -1.14 16 23 C -0.14 -0.98 7.19 -25.91 -0.19 -1.17 16 24 C 0.26 1.82 3.27 -25.91 -0.08 1.74 16 25 F -0.19 -1.68 17.41 2.25 0.04 -1.65 16 26 F -0.18 -1.41 17.38 2.25 0.04 -1.37 16 27 C -0.15 -0.81 7.43 -25.83 -0.19 -1.00 16 28 C 0.11 1.26 5.44 -2.41 -0.01 1.24 16 29 H 0.06 0.77 7.40 -51.93 -0.38 0.39 16 30 H 0.10 1.73 5.79 -51.93 -0.30 1.42 16 31 H 0.02 0.19 8.12 -51.93 -0.42 -0.23 16 32 H 0.09 1.30 6.76 -51.93 -0.35 0.95 16 33 H 0.05 0.71 8.12 -51.93 -0.42 0.29 16 34 H 0.37 7.65 5.76 -40.82 -0.24 7.41 16 35 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.13 0.59 8.09 -51.93 -0.42 0.17 16 41 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.13 1.02 7.44 -51.93 -0.39 0.63 16 43 H 0.12 0.66 8.10 -51.93 -0.42 0.24 16 44 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.08 0.96 7.67 -51.93 -0.40 0.56 16 LS Contribution 380.13 15.07 5.73 5.73 Total: -1.00 -34.09 380.13 -7.30 -41.39 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -6.68 Total: 7.35 kcal Atomic # 6 Polarization: 9.86 SS G_CDS: -1.01 Total: 8.85 kcal Atomic # 7 Polarization: -52.33 SS G_CDS: -0.87 Total: -53.21 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: 0.17 Total: -21.67 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.08 Total: -3.02 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -4.71 Total: 14.57 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.09 -7.30 -41.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189604325.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.418 kcal (2) G-P(sol) polarization free energy of solvation -34.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds