Wall clock time and date at job start Sat Apr 11 2020 07:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46903 * 111.00331 * 2 1 4 4 C 1.50702 * 109.46760 * 66.04477 * 3 2 1 5 5 O 1.21287 * 120.00288 * 0.02562 * 4 3 2 6 6 N 1.34779 * 119.99633 * 179.97438 * 4 3 2 7 7 C 1.37097 * 119.99657 * 180.02562 * 6 4 3 8 8 H 1.08000 * 120.00222 * 359.97438 * 7 6 4 9 9 C 1.38954 * 119.99821 * 180.02562 * 7 6 4 10 10 N 1.31405 * 120.00105 * 180.02562 * 9 7 6 11 11 Si 1.86804 * 119.99802 * 359.97438 * 9 7 6 12 12 H 1.48496 * 109.47231 * 90.00853 * 11 9 7 13 13 H 1.48509 * 109.47054 * 210.00279 * 11 9 7 14 14 H 1.48494 * 109.47386 * 330.00073 * 11 9 7 15 15 C 1.46904 * 110.99938 * 236.04638 * 2 1 3 16 16 H 1.08998 * 110.88613 * 63.56954 * 15 2 1 17 17 C 1.55152 * 111.00400 * 299.68734 * 15 2 1 18 18 C 1.54323 * 102.94050 * 206.38468 * 17 15 2 19 19 N 1.47016 * 107.27348 * 22.19368 * 18 17 15 20 20 C 1.34778 * 125.64890 * 181.02349 * 19 18 17 21 21 O 1.21290 * 119.99956 * 180.02562 * 20 19 18 22 22 C 1.50700 * 120.00125 * 0.02562 * 20 19 18 23 23 C 1.53784 * 113.61311 * 180.02562 * 22 20 19 24 24 C 1.53787 * 87.07851 * 220.01760 * 23 22 20 25 25 F 1.39897 * 113.61095 * 139.98181 * 24 23 22 26 26 F 1.39897 * 113.61330 * 270.79983 * 24 23 22 27 27 C 1.53783 * 87.17004 * 25.39307 * 24 23 22 28 28 C 1.47430 * 108.70349 * 1.28457 * 19 18 17 29 29 H 1.08997 * 109.47000 * 189.84361 * 1 2 3 30 30 H 1.08999 * 109.46943 * 309.84260 * 1 2 3 31 31 H 1.08996 * 109.47306 * 69.83999 * 1 2 3 32 32 H 1.08994 * 109.47600 * 186.05087 * 3 2 1 33 33 H 1.09003 * 109.47212 * 306.04914 * 3 2 1 34 34 H 0.96998 * 120.00248 * 0.02562 * 6 4 3 35 35 H 0.97005 * 120.00506 * 179.97438 * 10 9 7 36 36 H 1.08997 * 110.72038 * 88.02305 * 17 15 2 37 37 H 1.09003 * 110.71824 * 324.74697 * 17 15 2 38 38 H 1.09000 * 109.88482 * 262.77606 * 18 17 15 39 39 H 1.09002 * 109.88394 * 141.61384 * 18 17 15 40 40 H 1.08998 * 112.90368 * 311.25153 * 22 20 19 41 41 H 1.09002 * 113.61445 * 105.46794 * 23 22 20 42 42 H 1.08999 * 113.69346 * 334.57799 * 23 22 20 43 43 H 1.08994 * 113.61656 * 89.15774 * 27 24 23 44 44 H 1.09001 * 113.60861 * 220.06143 * 27 24 23 45 45 H 1.08999 * 110.36584 * 94.48261 * 28 19 18 46 46 H 1.08998 * 110.37031 * 216.80340 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 1.2985 5 8 1.0054 1.4453 2.1411 6 7 2.0190 3.3198 1.5238 7 6 1.6932 3.9343 2.7052 8 1 1.1302 3.3987 3.4552 9 6 2.0866 5.2466 2.9373 10 7 1.7749 5.8355 4.0699 11 14 3.0599 6.1733 1.6397 12 1 2.1234 6.8775 0.7276 13 1 3.9468 7.1645 2.3002 14 1 3.8834 5.2146 0.8601 15 6 1.9954 -0.7660 -1.1376 16 1 1.7115 -0.3029 -2.0826 17 6 1.5250 -2.2433 -1.0787 18 6 2.6363 -2.9907 -1.8454 19 7 3.8376 -2.1440 -1.8083 20 6 5.0214 -2.4344 -2.3834 21 8 5.9487 -1.6584 -2.2877 22 6 5.1930 -3.7232 -3.1453 23 6 6.5998 -3.9051 -3.7392 24 6 5.9124 -4.4817 -4.9882 25 9 6.4986 -4.0711 -6.1902 26 9 5.7084 -5.8644 -4.9276 27 6 4.6748 -3.6585 -4.5936 28 6 3.5347 -0.9274 -1.0325 29 1 -0.3633 -1.0125 0.1757 30 1 -0.3633 0.6584 0.7890 31 1 -0.3634 0.3542 -0.9647 32 1 3.0797 1.3444 -0.1083 33 1 1.5611 1.9274 -0.8309 34 1 2.5243 3.8010 0.8500 35 1 2.0498 6.7515 4.2321 36 1 0.5641 -2.3623 -1.5793 37 1 1.4688 -2.5893 -0.0466 38 1 2.3291 -3.1532 -2.8785 39 1 2.8413 -3.9464 -1.3628 40 1 4.8364 -4.5929 -2.5935 41 1 7.2100 -4.6313 -3.2021 42 1 7.1226 -2.9664 -3.9226 43 1 4.6691 -2.6515 -5.0107 44 1 3.7331 -4.1860 -4.7453 45 1 3.8348 -1.0562 0.0074 46 1 4.0370 -0.0642 -1.4690 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189604325.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:33:14 Heat of formation + Delta-G solvation = -148.303403 kcal Electronic energy + Delta-G solvation = -30399.486731 eV Core-core repulsion = 25767.290981 eV Total energy + Delta-G solvation = -4632.195749 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.86032 -48.20212 -41.52823 -40.55445 -39.33348 -37.78197 -36.76947 -35.82414 -33.75457 -32.06511 -30.24898 -29.43073 -27.37438 -27.29927 -26.59202 -24.88400 -23.87500 -21.77277 -21.40881 -21.12732 -20.29228 -20.02917 -18.99593 -18.07682 -17.76565 -17.60937 -17.44591 -17.20559 -16.80024 -16.59354 -16.12580 -15.90535 -15.55208 -15.50808 -15.10371 -15.06194 -14.82748 -14.60338 -14.48394 -14.33906 -14.21696 -14.00597 -13.86502 -13.66298 -13.41730 -13.15824 -13.00799 -12.81393 -12.64228 -12.51054 -12.49332 -12.41857 -12.31974 -11.99548 -11.85122 -11.81721 -11.47741 -11.46473 -10.98652 -10.37173 -10.22946 -9.72216 -9.25341 -8.41459 -6.01617 1.29778 1.33691 1.42801 1.43504 1.76958 1.95656 2.21847 2.41023 2.61951 2.73558 3.14476 3.15618 3.19977 3.22824 3.27460 3.49433 3.68726 3.89650 4.05401 4.11317 4.23489 4.28100 4.34547 4.35394 4.36767 4.42609 4.44845 4.57203 4.59223 4.66355 4.70590 4.75245 4.82548 4.91007 4.99921 5.07808 5.18065 5.20090 5.31018 5.52923 5.87429 5.98677 6.19014 6.44630 6.59544 6.88649 7.02583 7.40038 7.96785 8.76002 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.018485 B = 0.002105 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.396220 B =13296.092388 C =14346.890435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.529 5.529 3 C 0.051 3.949 4 C 0.453 3.547 5 O -0.602 6.602 6 N -0.594 5.594 7 C -0.324 4.324 8 H 0.058 0.942 9 C -0.015 4.015 10 N -0.934 5.934 11 Si 0.961 3.039 12 H -0.256 1.256 13 H -0.276 1.276 14 H -0.235 1.235 15 C 0.073 3.927 16 H 0.074 0.926 17 C -0.118 4.118 18 C 0.099 3.901 19 N -0.611 5.611 20 C 0.539 3.461 21 O -0.581 6.581 22 C -0.119 4.119 23 C -0.148 4.148 24 C 0.251 3.749 25 F -0.201 7.201 26 F -0.181 7.181 27 C -0.135 4.135 28 C 0.110 3.890 29 H 0.084 0.916 30 H 0.050 0.950 31 H 0.039 0.961 32 H 0.108 0.892 33 H 0.080 0.920 34 H 0.388 0.612 35 H 0.279 0.721 36 H 0.108 0.892 37 H 0.078 0.922 38 H 0.102 0.898 39 H 0.093 0.907 40 H 0.154 0.846 41 H 0.109 0.891 42 H 0.111 0.889 43 H 0.115 0.885 44 H 0.132 0.868 45 H 0.061 0.939 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.228 -22.371 -24.063 33.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.254 5.254 3 C -0.080 4.080 4 C 0.241 3.759 5 O -0.485 6.485 6 N -0.236 5.236 7 C -0.454 4.454 8 H 0.076 0.924 9 C -0.214 4.214 10 N -0.575 5.575 11 Si 0.781 3.219 12 H -0.180 1.180 13 H -0.201 1.201 14 H -0.158 1.158 15 C -0.035 4.035 16 H 0.092 0.908 17 C -0.156 4.156 18 C -0.022 4.022 19 N -0.344 5.344 20 C 0.328 3.672 21 O -0.461 6.461 22 C -0.140 4.140 23 C -0.186 4.186 24 C 0.215 3.785 25 F -0.182 7.182 26 F -0.162 7.162 27 C -0.173 4.173 28 C -0.013 4.013 29 H 0.103 0.897 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.126 0.874 33 H 0.098 0.902 34 H 0.223 0.777 35 H 0.088 0.912 36 H 0.126 0.874 37 H 0.097 0.903 38 H 0.120 0.880 39 H 0.111 0.889 40 H 0.171 0.829 41 H 0.128 0.872 42 H 0.129 0.871 43 H 0.134 0.866 44 H 0.151 0.849 45 H 0.079 0.921 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.511 -22.489 -22.947 32.445 hybrid contribution 0.382 1.479 -0.493 1.605 sum 4.893 -21.010 -23.440 31.856 Atomic orbital electron populations 1.22394 0.85770 1.03332 1.00289 1.61508 1.09410 1.11830 1.42615 1.21835 1.02212 0.90137 0.93795 1.20800 0.82960 0.81698 0.90445 1.90520 1.44074 1.64989 1.48948 1.42075 1.51765 1.12780 1.17009 1.18990 1.34590 0.96891 0.94885 0.92407 1.26069 0.98690 0.97048 0.99550 1.69794 1.47342 1.14339 1.25977 0.85414 0.78958 0.79091 0.78393 1.18011 1.20111 1.15843 1.22872 0.92966 0.95704 0.92000 0.90817 1.22728 0.99143 0.91601 1.02126 1.22377 0.82791 0.94355 1.02725 1.48462 1.12168 1.21767 1.52017 1.20271 0.80541 0.87910 0.78471 1.90733 1.40966 1.52065 1.62379 1.22580 0.98377 0.96850 0.96153 1.24024 0.97477 1.03932 0.93171 1.22115 0.97320 0.76996 0.82050 1.93005 1.85837 1.89631 1.49695 1.93026 1.95488 1.31311 1.96394 1.24039 0.98556 1.02489 0.92223 1.22195 0.95285 0.87943 0.95909 0.89716 0.93119 0.94224 0.87448 0.90231 0.77702 0.91194 0.87382 0.90288 0.88002 0.88906 0.82856 0.87209 0.87079 0.86632 0.84944 0.92051 0.91411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 8.91 127.69 1.14 1.92 16 2 N -0.53 -14.26 4.40 -893.01 -3.93 -18.19 16 3 C 0.05 1.55 5.34 85.56 0.46 2.01 16 4 C 0.45 20.16 7.41 87.66 0.65 20.81 16 5 O -0.60 -32.36 13.97 -3.05 -0.04 -32.40 16 6 N -0.59 -28.05 5.09 -306.98 -1.56 -29.61 16 7 C -0.32 -18.96 10.16 84.04 0.85 -18.11 16 8 H 0.06 4.01 7.39 -2.91 -0.02 3.99 16 9 C -0.01 -0.83 5.50 84.93 0.47 -0.37 16 10 N -0.93 -56.44 13.96 21.66 0.30 -56.13 16 11 Si 0.96 39.27 27.74 68.60 1.90 41.17 16 12 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 13 H -0.28 -11.25 7.11 99.48 0.71 -10.54 16 14 H -0.23 -8.24 6.52 99.48 0.65 -7.59 16 15 C 0.07 1.32 2.71 46.38 0.13 1.45 16 16 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 17 C -0.12 -1.37 5.37 31.78 0.17 -1.20 16 18 C 0.10 0.80 6.45 86.73 0.56 1.36 16 19 N -0.61 -9.75 3.32 -811.35 -2.70 -12.45 16 20 C 0.54 9.82 7.38 87.66 0.65 10.47 16 21 O -0.58 -16.22 16.16 -3.06 -0.05 -16.27 16 22 C -0.12 -1.18 3.34 -10.95 -0.04 -1.22 16 23 C -0.15 -1.81 7.19 31.12 0.22 -1.59 16 24 C 0.25 3.02 3.27 31.12 0.10 3.12 16 25 F -0.20 -3.36 17.41 44.97 0.78 -2.58 16 26 F -0.18 -2.41 17.38 44.97 0.78 -1.62 16 27 C -0.13 -0.99 7.43 31.18 0.23 -0.75 16 28 C 0.11 2.31 5.44 86.93 0.47 2.78 16 29 H 0.08 1.84 7.40 -2.39 -0.02 1.82 16 30 H 0.05 1.83 5.79 -2.39 -0.01 1.81 16 31 H 0.04 0.84 8.12 -2.39 -0.02 0.82 16 32 H 0.11 2.90 6.76 -2.39 -0.02 2.88 16 33 H 0.08 1.98 8.12 -2.39 -0.02 1.96 16 34 H 0.39 15.35 5.76 -92.71 -0.53 14.81 16 35 H 0.28 15.41 8.31 -92.70 -0.77 14.64 16 36 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 39 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.15 0.74 8.09 -2.39 -0.02 0.72 16 41 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.11 1.76 7.44 -2.39 -0.02 1.74 16 43 H 0.12 0.95 8.10 -2.39 -0.02 0.93 16 44 H 0.13 0.23 8.14 -2.39 -0.02 0.21 16 45 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.07 1.56 7.67 -2.39 -0.02 1.54 16 Total: -1.00 -82.39 380.13 1.97 -80.41 By element: Atomic # 1 Polarization: 26.58 SS G_CDS: 0.42 Total: 27.00 kcal Atomic # 6 Polarization: 14.61 SS G_CDS: 6.06 Total: 20.67 kcal Atomic # 7 Polarization: -108.50 SS G_CDS: -7.88 Total: -116.38 kcal Atomic # 8 Polarization: -48.58 SS G_CDS: -0.09 Total: -48.67 kcal Atomic # 9 Polarization: -5.77 SS G_CDS: 1.56 Total: -4.20 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 1.90 Total: 41.17 kcal Total: -82.39 1.97 -80.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189604325.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.888 kcal (2) G-P(sol) polarization free energy of solvation -82.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds