Wall clock time and date at job start Sat Apr 11 2020 07:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46900 * 110.99748 * 2 1 4 4 C 1.50707 * 109.47090 * 293.95363 * 3 2 1 5 5 O 1.21285 * 119.99831 * 0.02562 * 4 3 2 6 6 N 1.34778 * 119.99801 * 179.97438 * 4 3 2 7 7 C 1.37099 * 119.99697 * 179.97438 * 6 4 3 8 8 H 1.07999 * 120.00206 * 0.02562 * 7 6 4 9 9 C 1.38957 * 119.99817 * 179.97438 * 7 6 4 10 10 N 1.31410 * 119.99929 * 180.02562 * 9 7 6 11 11 Si 1.86795 * 119.99991 * 0.02562 * 9 7 6 12 12 H 1.48496 * 109.47148 * 89.99934 * 11 9 7 13 13 H 1.48501 * 109.47125 * 210.00178 * 11 9 7 14 14 H 1.48500 * 109.47245 * 330.00099 * 11 9 7 15 15 C 1.46897 * 111.00024 * 123.95057 * 2 1 3 16 16 H 1.08992 * 110.91860 * 297.68439 * 15 2 1 17 17 C 1.55276 * 111.09744 * 61.59953 * 15 2 1 18 18 C 1.54327 * 103.00727 * 153.44782 * 17 15 2 19 19 N 1.47023 * 107.27085 * 337.88422 * 18 17 15 20 20 C 1.34774 * 125.64864 * 178.96297 * 19 18 17 21 21 O 1.21281 * 120.00002 * 179.97438 * 20 19 18 22 22 C 1.50699 * 120.00148 * 359.97310 * 20 19 18 23 23 C 1.53776 * 113.61426 * 277.49984 * 22 20 19 24 24 C 1.53779 * 87.08039 * 220.01617 * 23 22 20 25 25 F 1.39898 * 113.61675 * 270.88350 * 24 23 22 26 26 F 1.39902 * 113.69035 * 139.99225 * 24 23 22 27 27 C 1.53775 * 113.61477 * 179.97438 * 22 20 19 28 28 C 1.47426 * 108.70308 * 358.93758 * 19 18 17 29 29 H 1.08991 * 109.47323 * 301.84957 * 1 2 3 30 30 H 1.09003 * 109.47106 * 61.85414 * 1 2 3 31 31 H 1.08997 * 109.46352 * 181.84748 * 1 2 3 32 32 H 1.09000 * 109.47263 * 53.95125 * 3 2 1 33 33 H 1.09002 * 109.47219 * 173.95553 * 3 2 1 34 34 H 0.96998 * 119.99943 * 0.02562 * 6 4 3 35 35 H 0.96999 * 120.00081 * 180.02562 * 10 9 7 36 36 H 1.08993 * 110.62562 * 35.09421 * 17 15 2 37 37 H 1.09007 * 110.75491 * 271.86250 * 17 15 2 38 38 H 1.08999 * 109.87986 * 218.46521 * 18 17 15 39 39 H 1.09000 * 109.88173 * 97.29809 * 18 17 15 40 40 H 1.09006 * 112.84641 * 48.80112 * 22 20 19 41 41 H 1.09002 * 113.61567 * 334.56068 * 23 22 20 42 42 H 1.09001 * 113.61479 * 105.46747 * 23 22 20 43 43 H 1.08998 * 113.61893 * 254.53044 * 27 22 20 44 44 H 1.08998 * 113.61443 * 25.35431 * 27 22 20 45 45 H 1.09005 * 110.36643 * 142.96388 * 28 19 18 46 46 H 1.08995 * 110.37190 * 265.18561 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 -1.2985 5 8 1.0046 1.4456 -2.1408 6 7 2.0179 3.3203 -1.5233 7 6 1.6922 3.9347 -2.7048 8 1 1.1299 3.3988 -3.4552 9 6 2.0845 5.2475 -2.9364 10 7 1.7719 5.8367 -4.0687 11 14 3.0564 6.1746 -1.6383 12 1 4.5090 5.9629 -1.8623 13 1 2.7475 7.6243 -1.7301 14 1 2.6853 5.6739 -0.2904 15 6 1.9955 -0.7659 1.1376 16 1 1.6934 -0.3156 2.0831 17 6 1.5525 -2.2523 1.0636 18 6 2.6701 -2.9866 1.8340 19 7 3.8561 -2.1179 1.8158 20 6 5.0396 -2.3920 2.3995 21 8 5.9534 -1.5986 2.3195 22 6 5.2274 -3.6843 3.1517 23 6 4.6956 -3.6404 4.5939 24 6 5.9426 -4.4461 4.9947 25 9 5.7630 -5.8314 4.9191 26 9 6.5105 -4.0373 6.2061 27 6 6.6316 -3.8461 3.7573 28 6 3.5367 -0.8976 1.0527 29 1 -0.3633 0.5422 0.8729 30 1 -0.3633 0.4848 -0.9062 31 1 -0.3632 -1.0272 0.0331 32 1 1.5610 1.9274 0.8309 33 1 3.0797 1.3445 0.1082 34 1 2.5232 3.8014 -0.8495 35 1 2.0461 6.7529 -4.2305 36 1 1.5121 -2.5898 0.0280 37 1 0.5893 -2.3932 1.5541 38 1 2.8968 -3.9338 1.3447 39 1 2.3564 -3.1640 2.8626 40 1 4.8924 -4.5548 2.5876 41 1 4.6687 -2.6371 5.0191 42 1 3.7612 -4.1847 4.7315 43 1 7.2598 -4.5563 3.2197 44 1 7.1347 -2.8990 3.9523 45 1 4.0170 -0.0303 1.5057 46 1 3.8515 -1.0058 0.0148 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189604326.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:33:18 Heat of formation + Delta-G solvation = -148.316138 kcal Electronic energy + Delta-G solvation = -30404.004752 eV Core-core repulsion = 25771.808450 eV Total energy + Delta-G solvation = -4632.196302 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.85909 -48.20128 -41.53370 -40.54984 -39.33849 -37.78882 -36.76951 -35.82535 -33.75496 -32.06672 -30.26861 -29.43145 -27.37463 -27.29554 -26.59091 -24.88508 -23.88055 -21.77701 -21.41003 -21.12176 -20.29799 -20.02624 -18.99778 -18.08003 -17.76462 -17.60892 -17.44686 -17.20560 -16.80542 -16.59497 -16.10826 -15.92075 -15.56277 -15.49909 -15.10756 -15.06118 -14.83893 -14.62531 -14.48355 -14.33256 -14.23178 -14.00871 -13.84400 -13.66025 -13.43630 -13.14702 -13.00669 -12.80172 -12.63354 -12.51096 -12.48348 -12.41934 -12.34145 -11.98203 -11.86117 -11.80553 -11.47854 -11.47342 -10.98450 -10.37266 -10.23515 -9.72189 -9.25334 -8.41518 -6.01631 1.28858 1.34474 1.42514 1.43731 1.76826 1.95486 2.21824 2.40924 2.61757 2.73417 3.13980 3.15474 3.20544 3.23441 3.27288 3.49219 3.68266 3.89838 4.04347 4.11359 4.23437 4.27778 4.34495 4.35572 4.37050 4.42266 4.44883 4.58929 4.59258 4.65611 4.70649 4.72866 4.82527 4.91256 4.99756 5.07453 5.18344 5.21356 5.31475 5.52859 5.87164 5.98300 6.18989 6.44607 6.59530 6.88706 7.02607 7.39976 7.96884 8.75958 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.018408 B = 0.002110 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.732168 B =13263.821881 C =14325.550560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.528 5.528 3 C 0.051 3.949 4 C 0.453 3.547 5 O -0.601 6.601 6 N -0.594 5.594 7 C -0.324 4.324 8 H 0.058 0.942 9 C -0.015 4.015 10 N -0.934 5.934 11 Si 0.961 3.039 12 H -0.260 1.260 13 H -0.274 1.274 14 H -0.232 1.232 15 C 0.073 3.927 16 H 0.073 0.927 17 C -0.118 4.118 18 C 0.099 3.901 19 N -0.611 5.611 20 C 0.539 3.461 21 O -0.581 6.581 22 C -0.119 4.119 23 C -0.135 4.135 24 C 0.251 3.749 25 F -0.181 7.181 26 F -0.201 7.201 27 C -0.148 4.148 28 C 0.110 3.890 29 H 0.033 0.967 30 H 0.052 0.948 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.108 0.892 34 H 0.388 0.612 35 H 0.279 0.721 36 H 0.079 0.921 37 H 0.108 0.892 38 H 0.093 0.907 39 H 0.102 0.898 40 H 0.154 0.846 41 H 0.115 0.885 42 H 0.132 0.868 43 H 0.109 0.891 44 H 0.111 0.889 45 H 0.068 0.932 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.314 -22.440 24.025 33.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.253 5.253 3 C -0.080 4.080 4 C 0.241 3.759 5 O -0.485 6.485 6 N -0.236 5.236 7 C -0.454 4.454 8 H 0.076 0.924 9 C -0.214 4.214 10 N -0.574 5.574 11 Si 0.782 3.218 12 H -0.185 1.185 13 H -0.199 1.199 14 H -0.156 1.156 15 C -0.036 4.036 16 H 0.091 0.909 17 C -0.156 4.156 18 C -0.022 4.022 19 N -0.344 5.344 20 C 0.328 3.672 21 O -0.461 6.461 22 C -0.140 4.140 23 C -0.173 4.173 24 C 0.215 3.785 25 F -0.162 7.162 26 F -0.182 7.182 27 C -0.186 4.186 28 C -0.014 4.014 29 H 0.052 0.948 30 H 0.071 0.929 31 H 0.109 0.891 32 H 0.097 0.903 33 H 0.126 0.874 34 H 0.223 0.777 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.127 0.873 38 H 0.111 0.889 39 H 0.120 0.880 40 H 0.171 0.829 41 H 0.134 0.866 42 H 0.151 0.849 43 H 0.128 0.872 44 H 0.129 0.871 45 H 0.086 0.914 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.587 -22.548 22.917 32.475 hybrid contribution 0.378 1.500 0.505 1.627 sum 4.965 -21.048 23.422 31.879 Atomic orbital electron populations 1.22435 0.85784 1.02992 1.00802 1.61512 1.09398 1.11838 1.42514 1.21857 1.02269 0.90072 0.93784 1.20801 0.82962 0.81724 0.90410 1.90511 1.44009 1.65021 1.48977 1.42071 1.51910 1.12693 1.16960 1.18991 1.34720 0.96953 0.94687 0.92402 1.26070 0.98684 0.97036 0.99576 1.69796 1.47246 1.14368 1.26039 0.85412 0.78987 0.78287 0.79158 1.18463 1.19937 1.15575 1.22832 0.92974 0.95713 0.92076 0.90909 1.22757 0.99204 0.91535 1.02121 1.22380 0.83177 0.93978 1.02709 1.48456 1.12766 1.20910 1.52263 1.20270 0.80440 0.88130 0.78358 1.90731 1.41821 1.51178 1.62396 1.22550 0.98311 0.96845 0.96256 1.24004 0.98371 1.02663 0.92261 1.22114 0.97671 0.76904 0.81792 1.93026 1.95852 1.31057 1.96278 1.93006 1.86562 1.89683 1.48904 1.24033 0.97506 1.03805 0.93274 1.22152 0.95165 0.87938 0.96126 0.94827 0.92899 0.89135 0.90338 0.87361 0.77710 0.91194 0.90273 0.87324 0.88884 0.88002 0.82851 0.86630 0.84949 0.87217 0.87075 0.91379 0.92064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 9.05 127.69 1.16 1.88 16 2 N -0.53 -14.26 4.40 -893.18 -3.93 -18.19 16 3 C 0.05 1.55 5.33 85.56 0.46 2.01 16 4 C 0.45 20.19 7.52 87.66 0.66 20.85 16 5 O -0.60 -32.37 13.88 -3.05 -0.04 -32.41 16 6 N -0.59 -28.09 5.09 -306.98 -1.56 -29.65 16 7 C -0.32 -18.97 10.16 84.04 0.85 -18.12 16 8 H 0.06 4.01 7.39 -2.91 -0.02 3.99 16 9 C -0.02 -0.84 5.50 84.93 0.47 -0.37 16 10 N -0.93 -56.46 13.96 21.67 0.30 -56.16 16 11 Si 0.96 39.32 27.74 68.60 1.90 41.22 16 12 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 13 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 14 H -0.23 -8.02 6.52 99.48 0.65 -7.38 16 15 C 0.07 1.31 2.71 46.35 0.13 1.44 16 16 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 17 C -0.12 -1.37 5.33 31.83 0.17 -1.20 16 18 C 0.10 0.79 6.45 86.73 0.56 1.35 16 19 N -0.61 -9.71 3.33 -811.78 -2.70 -12.41 16 20 C 0.54 9.79 7.37 87.66 0.65 10.44 16 21 O -0.58 -16.18 16.15 -3.03 -0.05 -16.22 16 22 C -0.12 -1.18 3.34 -11.02 -0.04 -1.22 16 23 C -0.13 -0.98 7.42 31.12 0.23 -0.75 16 24 C 0.25 3.01 3.27 31.13 0.10 3.11 16 25 F -0.18 -2.40 17.38 44.97 0.78 -1.62 16 26 F -0.20 -3.35 17.41 44.97 0.78 -2.57 16 27 C -0.15 -1.81 7.20 31.13 0.22 -1.58 16 28 C 0.11 2.29 5.35 86.86 0.46 2.75 16 29 H 0.03 0.76 8.13 -2.39 -0.02 0.74 16 30 H 0.05 1.92 5.91 -2.39 -0.01 1.91 16 31 H 0.09 1.83 6.92 -2.39 -0.02 1.81 16 32 H 0.08 1.98 8.11 -2.39 -0.02 1.96 16 33 H 0.11 2.91 6.71 -2.39 -0.02 2.90 16 34 H 0.39 15.36 5.76 -92.71 -0.53 14.83 16 35 H 0.28 15.42 8.31 -92.71 -0.77 14.65 16 36 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.11 0.76 7.98 -2.38 -0.02 0.74 16 38 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 39 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 40 H 0.15 0.73 8.09 -2.38 -0.02 0.71 16 41 H 0.12 0.95 8.09 -2.39 -0.02 0.93 16 42 H 0.13 0.23 8.14 -2.39 -0.02 0.21 16 43 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.11 1.76 7.43 -2.39 -0.02 1.74 16 45 H 0.07 1.55 7.68 -2.38 -0.02 1.53 16 46 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -82.46 379.59 1.98 -80.48 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: 0.42 Total: 26.94 kcal Atomic # 6 Polarization: 14.52 SS G_CDS: 6.08 Total: 20.60 kcal Atomic # 7 Polarization: -108.51 SS G_CDS: -7.89 Total: -116.41 kcal Atomic # 8 Polarization: -48.55 SS G_CDS: -0.09 Total: -48.64 kcal Atomic # 9 Polarization: -5.76 SS G_CDS: 1.56 Total: -4.19 kcal Atomic # 14 Polarization: 39.32 SS G_CDS: 1.90 Total: 41.22 kcal Total: -82.46 1.98 -80.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189604326.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.840 kcal (2) G-P(sol) polarization free energy of solvation -82.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds