Wall clock time and date at job start Sat Apr 11 2020 07:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46899 * 110.99769 * 2 1 4 4 C 1.50703 * 109.47107 * 66.04798 * 3 2 1 5 5 O 1.21286 * 120.00016 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00161 * 180.02562 * 4 3 2 7 7 C 1.37091 * 120.00108 * 180.02562 * 6 4 3 8 8 H 1.07995 * 120.00333 * 359.97438 * 7 6 4 9 9 C 1.38953 * 119.99712 * 179.97438 * 7 6 4 10 10 N 1.31411 * 120.00268 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99720 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47452 * 60.00137 * 11 9 7 13 13 H 1.48505 * 109.46988 * 180.02562 * 11 9 7 14 14 H 1.48506 * 109.47061 * 299.99710 * 11 9 7 15 15 C 1.46896 * 110.99805 * 236.04721 * 2 1 3 16 16 H 1.08999 * 110.88824 * 64.65358 * 15 2 1 17 17 C 1.55161 * 111.00420 * 188.53470 * 15 2 1 18 18 C 1.54315 * 102.94400 * 153.57638 * 17 15 2 19 19 N 1.47023 * 107.27331 * 337.80854 * 18 17 15 20 20 C 1.34776 * 125.64792 * 178.90239 * 19 18 17 21 21 O 1.21286 * 119.99450 * 180.02562 * 20 19 18 22 22 C 1.50694 * 120.00236 * 0.02562 * 20 19 18 23 23 H 1.09003 * 115.55012 * 325.66353 * 22 20 19 24 24 C 1.53002 * 117.50264 * 111.37913 * 22 20 19 25 25 C 1.52996 * 60.00155 * 107.48717 * 24 22 20 26 26 H 1.09003 * 117.52028 * 252.52053 * 25 24 22 27 27 C 1.53004 * 117.50037 * 107.48955 * 25 24 22 28 28 F 1.39897 * 109.47190 * 111.37626 * 27 25 24 29 29 F 1.39891 * 109.47385 * 231.38277 * 27 25 24 30 30 C 1.47470 * 108.72073 * 358.97479 * 19 18 17 31 31 H 1.08995 * 109.47407 * 59.99898 * 1 2 3 32 32 H 1.09006 * 109.46770 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46848 * 299.99626 * 1 2 3 34 34 H 1.09002 * 109.47043 * 186.04778 * 3 2 1 35 35 H 1.09001 * 109.47354 * 306.04839 * 3 2 1 36 36 H 0.97005 * 119.99463 * 359.97438 * 6 4 3 37 37 H 0.96996 * 119.99832 * 179.97438 * 10 9 7 38 38 H 1.09006 * 110.71856 * 271.94177 * 17 15 2 39 39 H 1.08998 * 110.71790 * 35.20919 * 17 15 2 40 40 H 1.09006 * 109.88414 * 97.22617 * 18 17 15 41 41 H 1.09000 * 109.88636 * 218.39046 * 18 17 15 42 42 H 1.08999 * 117.49833 * 214.98474 * 24 22 20 43 43 H 1.08997 * 117.49554 * 359.97438 * 24 22 20 44 44 H 1.09001 * 109.46513 * 351.38171 * 27 25 24 45 45 H 1.08998 * 110.34835 * 265.25474 * 30 19 18 46 46 H 1.08995 * 110.40572 * 142.92055 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 1.2985 5 8 1.0047 1.4456 2.1408 6 7 2.0180 3.3202 1.5234 7 6 1.6923 3.9347 2.7048 8 1 1.1300 3.3988 3.4552 9 6 2.0856 5.2470 2.9368 10 7 2.7693 5.8993 2.0236 11 14 1.6424 6.0841 4.5469 12 1 2.2353 5.3266 5.6782 13 1 2.1738 7.4708 4.5465 14 1 0.1653 6.1206 4.6956 15 6 1.9955 -0.7659 -1.1376 16 1 1.7277 -0.2924 -2.0821 17 6 3.5321 -0.9476 -1.0224 18 6 3.7865 -2.2486 -1.8122 19 7 2.5202 -2.9949 -1.8438 20 6 2.3207 -4.1778 -2.4581 21 8 1.2289 -4.7047 -2.4192 22 6 3.4540 -4.8458 -3.1931 23 1 4.1542 -4.1732 -3.6886 24 6 4.0159 -6.1393 -2.5998 25 6 3.1640 -6.1871 -3.8697 26 1 2.1533 -6.5862 -3.7835 27 6 3.8794 -6.4818 -5.1898 28 9 3.4945 -7.7429 -5.6573 29 9 3.5348 -5.5091 -6.1342 30 6 1.5037 -2.2342 -1.0936 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8901 34 1 3.0797 1.3444 -0.1083 35 1 1.5611 1.9274 -0.8309 36 1 2.5233 3.8014 0.8495 37 1 3.0435 6.8155 2.1854 38 1 4.0551 -0.1088 -1.4820 39 1 3.8295 -1.0645 0.0196 40 1 4.1016 -2.0100 -2.8281 41 1 4.5536 -2.8411 -1.3136 42 1 5.0861 -6.3178 -2.7046 43 1 3.5661 -6.5069 -1.6776 44 1 4.9575 -6.4670 -5.0298 45 1 1.4511 -2.5859 -0.0632 46 1 0.5302 -2.3229 -1.5757 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189945960.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:33:22 Heat of formation + Delta-G solvation = -131.753782 kcal Electronic energy + Delta-G solvation = -29814.874369 eV Core-core repulsion = 25183.396265 eV Total energy + Delta-G solvation = -4631.478104 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -49.35185 -47.38233 -40.63829 -39.08600 -38.02107 -36.83659 -35.53135 -33.86021 -31.28474 -31.13442 -29.51102 -27.88264 -27.46599 -25.70129 -24.65338 -23.34624 -22.71636 -21.93769 -20.32063 -19.54902 -19.11297 -18.30707 -17.87944 -17.62848 -17.42140 -16.83535 -16.70425 -15.96782 -15.74013 -15.26953 -14.76186 -14.55621 -14.34980 -14.27267 -13.98748 -13.87243 -13.75137 -13.73768 -13.61477 -13.51143 -12.94988 -12.92033 -12.72205 -12.59711 -12.25099 -11.94841 -11.54008 -11.51623 -11.46006 -11.30868 -11.16867 -11.13795 -11.03940 -10.96788 -10.83030 -10.45995 -10.23816 -10.19752 -9.49520 -8.93231 -8.51883 -8.02452 -7.92473 -6.44252 -3.85070 2.04759 2.47077 2.99720 3.18215 3.24230 3.26118 3.28664 3.65362 3.86929 3.88165 3.89861 3.96000 4.16211 4.20355 4.33719 4.44165 4.54034 4.60348 4.69138 4.82477 4.98571 5.01626 5.08383 5.13340 5.24320 5.28874 5.29940 5.46308 5.55621 5.59463 5.67127 5.73656 5.80643 5.82400 5.91053 5.98753 6.05534 6.24446 6.52100 7.12296 7.22038 7.29595 7.52751 7.82638 8.03448 8.59027 9.15595 9.51461 10.03305 10.73341 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.034131 B = 0.001685 C = 0.001656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.182729 B =16613.260847 C =16902.682421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.506 5.506 3 C 0.046 3.954 4 C 0.444 3.556 5 O -0.577 6.577 6 N -0.563 5.563 7 C -0.299 4.299 8 H 0.103 0.897 9 C 0.023 3.977 10 N -0.902 5.902 11 Si 0.931 3.069 12 H -0.273 1.273 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.068 3.932 16 H 0.055 0.945 17 C -0.127 4.127 18 C 0.102 3.898 19 N -0.612 5.612 20 C 0.559 3.441 21 O -0.537 6.537 22 C -0.164 4.164 23 H 0.132 0.868 24 C -0.126 4.126 25 C -0.193 4.193 26 H 0.141 0.859 27 C 0.297 3.703 28 F -0.200 7.200 29 F -0.201 7.201 30 C 0.117 3.883 31 H 0.016 0.984 32 H 0.061 0.939 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.048 0.952 36 H 0.392 0.608 37 H 0.272 0.728 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.115 0.885 43 H 0.114 0.886 44 H 0.114 0.886 45 H 0.084 0.916 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.810 -20.027 -14.424 25.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.231 5.231 3 C -0.085 4.085 4 C 0.229 3.771 5 O -0.461 6.461 6 N -0.200 5.200 7 C -0.429 4.429 8 H 0.121 0.879 9 C -0.179 4.179 10 N -0.543 5.543 11 Si 0.758 3.242 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.199 1.199 15 C -0.042 4.042 16 H 0.073 0.927 17 C -0.165 4.165 18 C -0.021 4.021 19 N -0.345 5.345 20 C 0.347 3.653 21 O -0.414 6.414 22 C -0.185 4.185 23 H 0.150 0.850 24 C -0.163 4.163 25 C -0.212 4.212 26 H 0.159 0.841 27 C 0.243 3.757 28 F -0.181 7.181 29 F -0.182 7.182 30 C -0.006 4.006 31 H 0.035 0.965 32 H 0.080 0.920 33 H 0.118 0.882 34 H 0.108 0.892 35 H 0.066 0.934 36 H 0.225 0.775 37 H 0.082 0.918 38 H 0.103 0.897 39 H 0.112 0.888 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.133 0.867 43 H 0.132 0.868 44 H 0.131 0.869 45 H 0.102 0.898 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.994 -20.806 -13.466 25.751 hybrid contribution -0.119 1.377 -0.604 1.509 sum 6.875 -19.429 -14.070 24.954 Atomic orbital electron populations 1.22603 0.86308 1.01714 1.02294 1.61634 1.08879 1.13008 1.39550 1.21881 1.00800 0.88531 0.97329 1.19688 0.85569 0.82959 0.88886 1.90487 1.43869 1.64641 1.47112 1.41851 1.49424 1.10711 1.18027 1.19646 1.33051 0.95469 0.94730 0.87947 1.25256 0.96784 0.96637 0.99218 1.69599 1.38008 1.12278 1.34441 0.85921 0.78917 0.77916 0.81482 1.19887 1.20995 1.19928 1.22781 0.94922 0.93294 0.93180 0.92671 1.22759 0.95495 0.96093 1.02190 1.22117 0.86217 0.93079 1.00699 1.48304 1.13063 1.20290 1.52880 1.19040 0.88290 0.79664 0.78316 1.90735 1.25806 1.63630 1.61253 1.22175 1.00880 0.91423 1.04019 0.85001 1.23143 1.00038 0.96368 0.96757 1.23379 1.03767 1.01334 0.92720 0.84142 1.21288 0.98821 0.71836 0.83729 1.93005 1.93369 1.41826 1.89872 1.93017 1.94315 1.63355 1.67535 1.22251 0.91576 0.89621 0.97108 0.96505 0.92016 0.88182 0.89247 0.93382 0.77515 0.91821 0.89706 0.88778 0.91221 0.90773 0.86693 0.86801 0.86873 0.89780 0.90404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.01 60.07 0.54 0.83 16 2 N -0.51 -7.82 4.40 -233.74 -1.03 -8.85 16 3 C 0.05 0.76 5.34 -4.98 -0.03 0.74 16 4 C 0.44 10.03 7.51 -10.98 -0.08 9.95 16 5 O -0.58 -14.99 13.88 5.55 0.08 -14.92 16 6 N -0.56 -13.81 5.29 -10.97 -0.06 -13.87 16 7 C -0.30 -8.15 9.68 -14.94 -0.14 -8.29 16 8 H 0.10 2.92 7.16 -52.49 -0.38 2.55 16 9 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 10 N -0.90 -24.01 13.05 55.50 0.72 -23.29 16 11 Si 0.93 20.71 29.55 -169.99 -5.02 15.68 16 12 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 13 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 14 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 15 C 0.07 0.80 2.71 -65.56 -0.18 0.63 16 16 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 17 C -0.13 -1.19 5.46 -24.90 -0.14 -1.33 16 18 C 0.10 0.77 6.31 -3.07 -0.02 0.75 16 19 N -0.61 -6.39 3.33 -170.49 -0.57 -6.95 16 20 C 0.56 6.29 7.63 -10.99 -0.08 6.20 16 21 O -0.54 -8.14 16.51 5.55 0.09 -8.05 16 22 C -0.16 -1.18 5.21 -91.77 -0.48 -1.65 16 23 H 0.13 0.67 7.67 -51.93 -0.40 0.27 16 24 C -0.13 -0.63 9.88 -26.73 -0.26 -0.89 16 25 C -0.19 -1.37 5.41 -90.62 -0.49 -1.86 16 26 H 0.14 1.30 7.67 -51.93 -0.40 0.90 16 27 C 0.30 1.86 5.50 37.16 0.20 2.07 16 28 F -0.20 -1.67 17.34 2.25 0.04 -1.63 16 29 F -0.20 -1.78 17.29 2.25 0.04 -1.74 16 30 C 0.12 1.40 5.21 -2.50 -0.01 1.39 16 31 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.86 6.86 -51.93 -0.36 0.50 16 33 H 0.10 1.92 5.88 -51.93 -0.31 1.61 16 34 H 0.09 1.30 6.86 -51.93 -0.36 0.95 16 35 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 36 H 0.39 9.16 7.90 -40.82 -0.32 8.84 16 37 H 0.27 6.88 8.31 -40.82 -0.34 6.55 16 38 H 0.08 0.68 7.89 -51.93 -0.41 0.27 16 39 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.07 0.41 7.98 -51.93 -0.41 0.00 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.11 0.24 8.05 -51.93 -0.42 -0.18 16 43 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.11 0.28 7.90 -51.93 -0.41 -0.13 16 45 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 46 H 0.08 1.00 7.82 -51.93 -0.41 0.59 16 LS Contribution 387.25 15.07 5.84 5.84 Total: -1.00 -33.49 387.25 -7.80 -41.29 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -6.66 Total: 7.46 kcal Atomic # 6 Polarization: 10.29 SS G_CDS: -1.27 Total: 9.02 kcal Atomic # 7 Polarization: -52.03 SS G_CDS: -0.93 Total: -52.96 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: 0.17 Total: -22.96 kcal Atomic # 9 Polarization: -3.45 SS G_CDS: 0.08 Total: -3.37 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.49 -7.80 -41.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189945960.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.462 kcal (2) G-P(sol) polarization free energy of solvation -33.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds