Wall clock time and date at job start Sat Apr 11 2020 07:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46898 * 110.99916 * 2 1 4 4 C 1.50706 * 109.47230 * 66.04286 * 3 2 1 5 5 O 1.21292 * 120.00099 * 0.02562 * 4 3 2 6 6 N 1.34783 * 119.99826 * 180.02562 * 4 3 2 7 7 C 1.37091 * 119.99605 * 179.97438 * 6 4 3 8 8 H 1.07997 * 120.00657 * 0.02562 * 7 6 4 9 9 C 1.38958 * 119.99873 * 179.97438 * 7 6 4 10 10 N 1.31409 * 120.00036 * 180.02562 * 9 7 6 11 11 Si 1.86797 * 119.99840 * 0.02562 * 9 7 6 12 12 H 1.48503 * 109.47386 * 89.99494 * 11 9 7 13 13 H 1.48502 * 109.46975 * 209.99695 * 11 9 7 14 14 H 1.48498 * 109.47049 * 329.99434 * 11 9 7 15 15 C 1.46892 * 111.00262 * 236.04355 * 2 1 3 16 16 H 1.08997 * 110.88443 * 63.59010 * 15 2 1 17 17 C 1.55154 * 111.00476 * 299.70485 * 15 2 1 18 18 C 1.54325 * 102.94349 * 206.42289 * 17 15 2 19 19 N 1.47020 * 107.26991 * 22.19841 * 18 17 15 20 20 C 1.34777 * 125.64682 * 181.02313 * 19 18 17 21 21 O 1.21281 * 119.99836 * 179.74648 * 20 19 18 22 22 C 1.50702 * 119.99924 * 0.02562 * 20 19 18 23 23 H 1.09000 * 115.54728 * 325.67155 * 22 20 19 24 24 C 1.52997 * 117.49923 * 111.37931 * 22 20 19 25 25 C 1.53001 * 117.49752 * 180.02562 * 22 20 19 26 26 H 1.09003 * 117.49754 * 0.02562 * 25 22 20 27 27 C 1.52996 * 117.49746 * 145.02244 * 25 22 20 28 28 F 1.39901 * 109.46835 * 179.97438 * 27 25 22 29 29 F 1.39896 * 109.47180 * 299.99379 * 27 25 22 30 30 C 1.47424 * 108.70358 * 1.28062 * 19 18 17 31 31 H 1.09004 * 109.46913 * 189.85222 * 1 2 3 32 32 H 1.09000 * 109.47934 * 309.85078 * 1 2 3 33 33 H 1.08998 * 109.47098 * 69.85759 * 1 2 3 34 34 H 1.08995 * 109.47466 * 186.04046 * 3 2 1 35 35 H 1.09001 * 109.47110 * 306.04810 * 3 2 1 36 36 H 0.96995 * 119.99721 * 359.97438 * 6 4 3 37 37 H 0.96998 * 120.00153 * 180.02562 * 10 9 7 38 38 H 1.09008 * 110.71721 * 88.06201 * 17 15 2 39 39 H 1.08999 * 110.87557 * 324.86389 * 17 15 2 40 40 H 1.09000 * 109.88136 * 262.77615 * 18 17 15 41 41 H 1.09002 * 110.00925 * 141.68819 * 18 17 15 42 42 H 1.09000 * 117.50176 * 214.97755 * 24 22 20 43 43 H 1.09002 * 117.49809 * 0.02562 * 24 22 20 44 44 H 1.08993 * 109.47358 * 59.99893 * 27 25 22 45 45 H 1.09001 * 110.36450 * 94.48560 * 30 19 18 46 46 H 1.08997 * 110.37091 * 216.80743 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0472 1.2984 5 8 1.0052 1.4454 2.1412 6 7 2.0179 3.3203 1.5232 7 6 1.6912 3.9352 2.7042 8 1 1.1289 3.3994 3.4546 9 6 2.0845 5.2476 2.9362 10 7 1.7718 5.8368 4.0684 11 14 3.0577 6.1742 1.6387 12 1 2.1212 6.8781 0.7263 13 1 3.9444 7.1656 2.2992 14 1 3.8814 5.2154 0.8592 15 6 1.9954 -0.7660 -1.1375 16 1 1.7118 -0.3027 -2.0825 17 6 1.5247 -2.2432 -1.0788 18 6 2.6366 -2.9910 -1.8444 19 7 3.8380 -2.1445 -1.8063 20 6 5.0222 -2.4352 -2.3803 21 8 5.9480 -1.6572 -2.2881 22 6 5.1942 -3.7241 -3.1420 23 1 4.6407 -4.5782 -2.7516 24 6 5.3717 -3.6302 -4.6587 25 6 6.5625 -3.9965 -3.7699 26 1 7.3385 -3.2436 -3.6317 27 6 7.0486 -5.4468 -3.8028 28 9 8.3083 -5.5028 -4.4088 29 9 7.1371 -5.9387 -2.4961 30 6 3.5346 -0.9278 -1.0310 31 1 -0.3633 -1.0126 0.1758 32 1 -0.3635 0.6585 0.7889 33 1 -0.3633 0.3539 -0.9648 34 1 3.0796 1.3445 -0.1081 35 1 1.5610 1.9273 -0.8309 36 1 2.5232 3.8014 0.8495 37 1 2.0460 6.7530 4.2303 38 1 0.5641 -2.3621 -1.5803 39 1 1.4654 -2.5913 -0.0476 40 1 2.3301 -3.1536 -2.8778 41 1 2.8417 -3.9477 -1.3639 42 1 4.9349 -4.4225 -5.2666 43 1 5.3645 -2.6360 -5.1056 44 1 6.3445 -6.0532 -4.3724 45 1 3.8338 -1.0565 0.0093 46 1 4.0375 -0.0647 -1.4671 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189945965.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:33:24 Heat of formation + Delta-G solvation = -151.068448 kcal Electronic energy + Delta-G solvation = -30029.069691 eV Core-core repulsion = 25396.754040 eV Total energy + Delta-G solvation = -4632.315651 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.88629 -47.94259 -41.46720 -40.54805 -39.32613 -37.59600 -36.76972 -35.83664 -33.76521 -32.07888 -30.27429 -29.44550 -28.27023 -26.70379 -25.96057 -24.36334 -23.50002 -22.42626 -21.42701 -21.15229 -20.31853 -20.02123 -18.93595 -18.18621 -18.06091 -17.80653 -17.60077 -17.14664 -16.81382 -16.64889 -16.33259 -15.87449 -15.68826 -15.41399 -14.89984 -14.86131 -14.67407 -14.48833 -14.37422 -14.32220 -14.30310 -14.19427 -13.89571 -13.62967 -13.43511 -13.17299 -13.09838 -12.83262 -12.61572 -12.43952 -12.36766 -12.01466 -12.00621 -11.88836 -11.85669 -11.71689 -11.60511 -11.47466 -11.05658 -10.38485 -10.23982 -9.74919 -9.26710 -8.42471 -6.02597 1.28812 1.31035 1.32597 1.41746 1.71504 1.94161 2.20832 2.48929 2.58106 2.80022 3.13543 3.19599 3.23131 3.38835 3.39542 3.57910 3.66879 3.76164 3.96068 4.03731 4.09122 4.20799 4.21816 4.26288 4.32930 4.33652 4.40972 4.55705 4.61533 4.68251 4.73850 4.79511 4.85099 4.89242 4.99694 5.03013 5.16314 5.18820 5.29919 5.51885 5.86197 5.97552 6.17481 6.42464 6.58427 6.87464 7.01387 7.38752 7.95400 8.75000 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.016528 B = 0.002046 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.679737 B =13680.579690 C =14722.838388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.530 5.530 3 C 0.051 3.949 4 C 0.453 3.547 5 O -0.601 6.601 6 N -0.594 5.594 7 C -0.325 4.325 8 H 0.058 0.942 9 C -0.015 4.015 10 N -0.933 5.933 11 Si 0.961 3.039 12 H -0.255 1.255 13 H -0.276 1.276 14 H -0.236 1.236 15 C 0.075 3.925 16 H 0.075 0.925 17 C -0.118 4.118 18 C 0.101 3.899 19 N -0.611 5.611 20 C 0.547 3.453 21 O -0.591 6.591 22 C -0.166 4.166 23 H 0.163 0.837 24 C -0.093 4.093 25 C -0.212 4.212 26 H 0.104 0.896 27 C 0.294 3.706 28 F -0.216 7.216 29 F -0.220 7.220 30 C 0.110 3.890 31 H 0.085 0.915 32 H 0.050 0.950 33 H 0.040 0.960 34 H 0.105 0.895 35 H 0.081 0.919 36 H 0.388 0.612 37 H 0.279 0.721 38 H 0.110 0.890 39 H 0.077 0.923 40 H 0.105 0.895 41 H 0.090 0.910 42 H 0.161 0.839 43 H 0.104 0.896 44 H 0.167 0.833 45 H 0.058 0.942 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.394 -24.213 -26.849 36.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.255 5.255 3 C -0.080 4.080 4 C 0.241 3.759 5 O -0.485 6.485 6 N -0.236 5.236 7 C -0.454 4.454 8 H 0.076 0.924 9 C -0.214 4.214 10 N -0.574 5.574 11 Si 0.782 3.218 12 H -0.179 1.179 13 H -0.201 1.201 14 H -0.160 1.160 15 C -0.033 4.033 16 H 0.093 0.907 17 C -0.156 4.156 18 C -0.020 4.020 19 N -0.343 5.343 20 C 0.338 3.662 21 O -0.472 6.472 22 C -0.187 4.187 23 H 0.180 0.820 24 C -0.130 4.130 25 C -0.232 4.232 26 H 0.123 0.877 27 C 0.241 3.759 28 F -0.198 7.198 29 F -0.201 7.201 30 C -0.013 4.013 31 H 0.103 0.897 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.123 0.877 35 H 0.099 0.901 36 H 0.223 0.777 37 H 0.088 0.912 38 H 0.129 0.871 39 H 0.096 0.904 40 H 0.123 0.877 41 H 0.108 0.892 42 H 0.178 0.822 43 H 0.123 0.877 44 H 0.184 0.816 45 H 0.077 0.923 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.691 -24.314 -25.675 35.553 hybrid contribution 0.645 1.812 0.062 1.925 sum 4.336 -22.501 -25.613 34.368 Atomic orbital electron populations 1.22402 0.85636 1.03382 1.00361 1.61496 1.09519 1.11826 1.42618 1.21830 1.02109 0.90161 0.93878 1.20791 0.82996 0.81711 0.90432 1.90520 1.44067 1.64987 1.48911 1.42070 1.51751 1.12725 1.17049 1.18992 1.34607 0.96883 0.94904 0.92386 1.26071 0.98679 0.97051 0.99559 1.69794 1.47317 1.14316 1.25971 0.85412 0.78961 0.79073 0.78399 1.17898 1.20075 1.15996 1.22851 0.92638 0.95786 0.92062 0.90678 1.22730 0.99196 0.91503 1.02130 1.22367 0.82584 0.94171 1.02895 1.48380 1.12050 1.21822 1.52079 1.19883 0.80465 0.87496 0.78387 1.90720 1.41325 1.52367 1.62827 1.22221 1.00777 0.97228 0.98443 0.81985 1.23354 0.94903 1.05862 0.88914 1.23320 0.93768 0.97320 1.08786 0.87735 1.21821 0.82727 0.93953 0.77373 1.92971 1.46194 1.97311 1.83281 1.92983 1.96706 1.89167 1.41254 1.22194 0.95564 0.87858 0.95734 0.89671 0.93072 0.94111 0.87662 0.90137 0.77717 0.91176 0.87116 0.90381 0.87655 0.89169 0.82166 0.87742 0.81615 0.92331 0.91610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 8.91 127.69 1.14 1.93 16 2 N -0.53 -14.78 4.39 -893.02 -3.92 -18.71 16 3 C 0.05 1.60 5.34 85.56 0.46 2.06 16 4 C 0.45 20.50 7.41 87.66 0.65 21.15 16 5 O -0.60 -32.74 13.97 -3.07 -0.04 -32.78 16 6 N -0.59 -28.44 5.09 -306.97 -1.56 -30.00 16 7 C -0.32 -19.16 10.16 84.04 0.85 -18.30 16 8 H 0.06 4.05 7.39 -2.91 -0.02 4.03 16 9 C -0.01 -0.84 5.50 84.93 0.47 -0.37 16 10 N -0.93 -56.77 13.96 21.67 0.30 -56.47 16 11 Si 0.96 39.73 27.74 68.60 1.90 41.63 16 12 H -0.25 -9.87 7.11 99.48 0.71 -9.16 16 13 H -0.28 -11.35 7.11 99.48 0.71 -10.65 16 14 H -0.24 -8.45 6.52 99.48 0.65 -7.80 16 15 C 0.08 1.45 2.71 46.39 0.13 1.57 16 16 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 17 C -0.12 -1.48 5.37 31.78 0.17 -1.31 16 18 C 0.10 0.95 6.28 86.73 0.54 1.49 16 19 N -0.61 -11.17 3.32 -811.35 -2.70 -13.87 16 20 C 0.55 11.66 7.63 87.66 0.67 12.33 16 21 O -0.59 -18.81 16.51 -3.03 -0.05 -18.86 16 22 C -0.17 -1.83 5.21 -11.54 -0.06 -1.89 16 23 H 0.16 0.78 7.73 -2.39 -0.02 0.76 16 24 C -0.09 -0.50 9.88 30.61 0.30 -0.19 16 25 C -0.21 -2.67 5.41 -10.78 -0.06 -2.73 16 26 H 0.10 2.09 7.67 -2.39 -0.02 2.07 16 27 C 0.29 2.97 5.50 71.98 0.40 3.36 16 28 F -0.22 -3.41 17.34 44.97 0.78 -2.63 16 29 F -0.22 -3.61 17.29 44.97 0.78 -2.83 16 30 C 0.11 2.53 5.44 86.93 0.47 3.01 16 31 H 0.08 1.88 7.40 -2.38 -0.02 1.87 16 32 H 0.05 1.86 5.79 -2.39 -0.01 1.85 16 33 H 0.04 0.87 8.12 -2.39 -0.02 0.85 16 34 H 0.11 2.98 6.76 -2.39 -0.02 2.97 16 35 H 0.08 2.06 8.12 -2.39 -0.02 2.04 16 36 H 0.39 15.62 5.76 -92.71 -0.53 15.08 16 37 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 38 H 0.11 0.83 8.14 -2.38 -0.02 0.82 16 39 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 41 H 0.09 0.59 8.05 -2.39 -0.02 0.57 16 42 H 0.16 -0.57 8.05 -2.39 -0.02 -0.59 16 43 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.17 -0.07 7.90 -2.39 -0.02 -0.09 16 45 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.07 1.66 7.67 -2.39 -0.02 1.64 16 Total: -1.00 -88.25 384.66 2.03 -86.21 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: 0.42 Total: 26.20 kcal Atomic # 6 Polarization: 15.97 SS G_CDS: 6.13 Total: 22.10 kcal Atomic # 7 Polarization: -111.16 SS G_CDS: -7.88 Total: -119.04 kcal Atomic # 8 Polarization: -51.55 SS G_CDS: -0.09 Total: -51.64 kcal Atomic # 9 Polarization: -7.02 SS G_CDS: 1.56 Total: -5.46 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 1.90 Total: 41.63 kcal Total: -88.25 2.03 -86.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189945965.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.854 kcal (2) G-P(sol) polarization free energy of solvation -88.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds