Wall clock time and date at job start Sat Apr 11 2020 07:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50700 * 109.47009 * 2 1 4 4 C 1.37976 * 120.07773 * 267.91616 * 3 2 1 5 5 C 1.38336 * 120.14645 * 179.97438 * 4 3 2 6 6 C 1.38384 * 120.29324 * 0.02562 * 5 4 3 7 7 C 1.37938 * 120.14382 * 359.74331 * 6 5 4 8 8 C 1.39563 * 120.06999 * 87.90069 * 3 2 1 9 9 C 1.47847 * 120.14300 * 359.97438 * 8 3 2 10 10 O 1.21554 * 120.00196 * 321.33928 * 9 8 3 11 11 N 1.34783 * 119.99742 * 141.34379 * 9 8 3 12 12 C 1.47424 * 125.64787 * 354.75767 * 11 9 8 13 13 C 1.54910 * 104.83174 * 204.09368 * 12 11 9 14 14 C 1.55157 * 101.57631 * 322.98648 * 13 12 11 15 15 H 1.08999 * 110.72439 * 277.13988 * 14 13 12 16 16 N 1.46904 * 110.71773 * 153.86565 * 14 13 12 17 17 C 1.46902 * 110.99945 * 154.99923 * 16 14 13 18 18 C 1.50701 * 109.46800 * 180.02562 * 17 16 14 19 19 O 1.21286 * 120.00548 * 359.97438 * 18 17 16 20 20 N 1.34779 * 119.99455 * 179.97438 * 18 17 16 21 21 C 1.37099 * 119.99692 * 179.97438 * 20 18 17 22 22 H 1.08003 * 120.00012 * 359.97438 * 21 20 18 23 23 C 1.38953 * 119.99881 * 180.02562 * 21 20 18 24 24 N 1.31419 * 119.99729 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 119.99983 * 359.97438 * 23 21 20 26 26 H 1.48496 * 109.46926 * 90.00593 * 25 23 21 27 27 H 1.48507 * 109.46716 * 210.00218 * 25 23 21 28 28 H 1.48501 * 109.47220 * 330.00084 * 25 23 21 29 29 C 1.47023 * 125.64747 * 174.44327 * 11 9 8 30 30 H 1.09000 * 109.47188 * 59.99920 * 1 2 3 31 31 H 1.09001 * 109.47411 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47088 * 299.99660 * 1 2 3 33 33 H 1.08999 * 109.47088 * 240.00340 * 2 1 3 34 34 H 1.09006 * 109.46783 * 120.00234 * 2 1 3 35 35 H 1.08005 * 119.92488 * 359.97438 * 4 3 2 36 36 H 1.07995 * 119.85219 * 180.02562 * 5 4 3 37 37 H 1.07995 * 119.92568 * 179.97438 * 6 5 4 38 38 H 1.07998 * 120.07602 * 180.27897 * 7 6 5 39 39 H 1.09003 * 110.36444 * 322.92983 * 12 11 9 40 40 H 1.08995 * 110.37067 * 85.25184 * 12 11 9 41 41 H 1.09001 * 111.00424 * 81.05795 * 13 12 11 42 42 H 1.08996 * 111.00356 * 204.91746 * 13 12 11 43 43 H 1.00904 * 110.99791 * 31.04545 * 16 14 13 44 44 H 1.09007 * 109.46795 * 299.99833 * 17 16 14 45 45 H 1.08989 * 109.47086 * 60.00025 * 17 16 14 46 46 H 0.96998 * 120.00328 * 359.97438 * 20 18 17 47 47 H 0.97000 * 119.99444 * 179.97438 * 24 23 21 48 48 H 1.08997 * 109.88188 * 298.39879 * 29 11 9 49 49 H 1.09004 * 109.87516 * 59.56165 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3038 2.0583 -1.1932 5 6 2.7644 3.3627 -1.1949 6 6 2.9566 4.0367 -0.0016 7 6 2.6846 3.4126 1.1980 8 6 2.2237 2.0949 1.2070 9 6 1.9341 1.4183 2.4892 10 8 0.9716 0.6819 2.5841 11 7 2.7372 1.6181 3.5531 12 6 3.9913 2.3931 3.5493 13 6 4.8094 1.8293 4.7378 14 6 3.6946 1.5580 5.7823 15 1 3.4450 2.4694 6.3256 16 7 4.0992 0.4928 6.7096 17 6 3.3940 0.6156 7.9924 18 6 3.8345 -0.4912 8.9155 19 8 4.6546 -1.3027 8.5415 20 7 3.3168 -0.5792 10.1569 21 6 3.7171 -1.5864 10.9965 22 1 4.4468 -2.3095 10.6632 23 6 3.1830 -1.6775 12.2761 24 7 3.5671 -2.6427 13.0812 25 14 1.9204 -0.4273 12.8525 26 1 0.5568 -0.9108 12.5178 27 1 2.0356 -0.2491 14.3223 28 1 2.1652 0.8716 12.1756 29 6 2.5043 1.1047 4.9109 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 2.1563 1.5377 -2.1279 36 1 2.9750 3.8573 -2.1316 37 1 3.3169 5.0547 -0.0098 38 1 2.8307 3.9411 2.1285 39 1 4.5283 2.2410 2.6131 40 1 3.7832 3.4522 3.7006 41 1 5.3171 0.9058 4.4595 42 1 5.5203 2.5679 5.1081 43 1 5.0991 0.4920 6.8452 44 1 3.6273 1.5797 8.4444 45 1 2.3196 0.5433 7.8247 46 1 2.6612 0.0699 10.4562 47 1 3.1946 -2.7060 13.9745 48 1 1.5750 1.5135 5.3075 49 1 2.4544 0.0159 4.8919 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480619566.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:33:35 Heat of formation + Delta-G solvation = -33.701574 kcal Electronic energy + Delta-G solvation = -29509.481564 eV Core-core repulsion = 25436.484853 eV Total energy + Delta-G solvation = -4072.996711 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.86859 -39.24120 -38.43379 -37.60392 -35.01647 -34.20575 -33.84381 -31.93035 -31.65379 -30.71184 -29.69975 -28.73399 -26.59558 -24.78298 -24.08365 -23.63323 -22.68574 -21.65631 -20.63298 -19.70299 -19.37633 -18.37391 -17.67876 -16.97768 -16.56465 -16.08915 -15.83054 -15.59969 -15.28899 -14.94671 -14.74391 -14.40406 -14.20936 -13.95990 -13.83114 -13.58525 -13.54294 -13.36638 -13.15203 -13.06756 -12.60954 -12.51695 -12.38255 -12.20560 -12.07664 -11.96909 -11.81614 -11.61614 -11.41186 -11.17942 -11.14689 -11.01930 -10.95063 -10.60469 -9.99517 -9.97907 -9.58516 -9.33231 -9.12169 -8.80750 -8.64044 -8.28750 -8.18727 -6.31972 -3.83511 0.59962 0.96000 2.53461 2.70213 3.01418 3.06797 3.14684 3.40509 3.71491 3.98689 4.06697 4.09653 4.26053 4.37850 4.40453 4.56578 4.59097 4.75196 4.87979 4.88751 5.00666 5.01809 5.14988 5.17812 5.22824 5.24946 5.27034 5.28600 5.47039 5.49634 5.57582 5.64122 5.67544 5.74319 5.77488 5.78670 5.84492 5.88486 5.94070 5.98550 6.03994 6.08719 6.19171 6.32870 6.50232 7.00816 7.26377 7.46825 7.56828 7.95923 8.13181 8.58289 8.93793 9.41148 9.80738 10.81056 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.021093 B = 0.001919 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.124673 B =14584.959441 C =15060.578612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.087 4.087 3 C -0.026 4.026 4 C -0.126 4.126 5 C -0.096 4.096 6 C -0.133 4.133 7 C -0.087 4.087 8 C -0.126 4.126 9 C 0.572 3.428 10 O -0.523 6.523 11 N -0.612 5.612 12 C 0.101 3.899 13 C -0.137 4.137 14 C 0.075 3.925 15 H 0.063 0.937 16 N -0.657 5.657 17 C 0.047 3.953 18 C 0.449 3.551 19 O -0.564 6.564 20 N -0.590 5.590 21 C -0.305 4.305 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.880 5.880 25 Si 0.880 3.120 26 H -0.270 1.270 27 H -0.277 1.277 28 H -0.270 1.270 29 C 0.114 3.886 30 H 0.045 0.955 31 H 0.055 0.945 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.128 0.872 36 H 0.125 0.875 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.357 0.643 44 H 0.047 0.953 45 H 0.088 0.912 46 H 0.371 0.629 47 H 0.273 0.727 48 H 0.066 0.934 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.881 17.998 -27.494 32.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.124 4.124 3 C -0.027 4.027 4 C -0.144 4.144 5 C -0.114 4.114 6 C -0.151 4.151 7 C -0.105 4.105 8 C -0.129 4.129 9 C 0.361 3.639 10 O -0.400 6.400 11 N -0.346 5.346 12 C -0.022 4.022 13 C -0.176 4.176 14 C -0.036 4.036 15 H 0.080 0.920 16 N -0.291 5.291 17 C -0.086 4.086 18 C 0.235 3.765 19 O -0.446 6.446 20 N -0.229 5.229 21 C -0.434 4.434 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.520 5.520 25 Si 0.707 3.293 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.196 1.196 29 C -0.009 4.009 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.146 0.854 36 H 0.143 0.857 37 H 0.145 0.855 38 H 0.147 0.853 39 H 0.099 0.901 40 H 0.088 0.912 41 H 0.109 0.891 42 H 0.105 0.895 43 H 0.178 0.822 44 H 0.065 0.935 45 H 0.106 0.894 46 H 0.203 0.797 47 H 0.084 0.916 48 H 0.084 0.916 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.344 16.439 -27.766 32.352 hybrid contribution -0.533 1.840 1.113 2.215 sum -2.877 18.279 -26.652 32.446 Atomic orbital electron populations 1.21729 0.93776 1.01978 1.02439 1.20605 0.97349 0.91589 1.02852 1.20010 0.94660 0.96508 0.91516 1.21029 1.00750 0.95201 0.97443 1.21328 0.97268 0.94502 0.98311 1.21081 1.01569 1.00292 0.92175 1.21406 0.96595 0.93684 0.98849 1.19757 1.04831 0.95428 0.92911 1.17963 0.82264 0.81141 0.82535 1.90787 1.28680 1.37012 1.83480 1.48334 1.23814 1.52872 1.09589 1.22428 0.84670 0.95336 0.99759 1.23033 0.97238 1.02685 0.94618 1.22529 0.94717 0.93055 0.93290 0.91950 1.59970 1.12506 1.45693 1.10931 1.21801 0.99920 0.97157 0.89746 1.19662 0.85921 0.88190 0.82726 1.90570 1.35570 1.43380 1.75098 1.42205 1.39682 1.28127 1.12897 1.19432 1.24159 1.06182 0.93621 0.86259 1.25050 0.98028 0.97203 0.95912 1.69627 1.43013 1.31266 1.08131 0.86666 0.82207 0.81143 0.79320 1.19553 1.20185 1.19553 1.22051 0.97531 1.01186 0.80094 0.93553 0.92588 0.90606 0.91379 0.90331 0.85437 0.85654 0.85505 0.85325 0.90147 0.91184 0.89100 0.89528 0.82182 0.93495 0.89367 0.79681 0.91599 0.91564 0.89451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.57 37.16 0.36 -1.09 16 2 C -0.09 -0.87 5.32 -27.88 -0.15 -1.02 16 3 C -0.03 -0.25 5.16 -104.22 -0.54 -0.79 16 4 C -0.13 -0.95 9.68 -39.64 -0.38 -1.33 16 5 C -0.10 -0.61 10.04 -39.49 -0.40 -1.00 16 6 C -0.13 -0.85 10.03 -39.64 -0.40 -1.25 16 7 C -0.09 -0.68 8.23 -39.18 -0.32 -1.00 16 8 C -0.13 -1.29 5.35 -104.96 -0.56 -1.85 16 9 C 0.57 7.16 6.84 -12.33 -0.08 7.08 16 10 O -0.52 -8.13 13.28 5.32 0.07 -8.06 16 11 N -0.61 -6.71 3.32 -171.62 -0.57 -7.28 16 12 C 0.10 0.77 5.26 -2.53 -0.01 0.76 16 13 C -0.14 -1.13 6.47 -24.58 -0.16 -1.28 16 14 C 0.08 0.80 3.27 -65.87 -0.22 0.58 16 15 H 0.06 0.59 7.83 -51.93 -0.41 0.18 16 16 N -0.66 -9.47 5.95 -106.05 -0.63 -10.10 16 17 C 0.05 0.74 6.03 -4.97 -0.03 0.71 16 18 C 0.45 10.03 7.82 -10.98 -0.09 9.94 16 19 O -0.56 -14.98 15.78 5.55 0.09 -14.89 16 20 N -0.59 -13.94 5.09 -10.96 -0.06 -13.99 16 21 C -0.31 -8.62 10.16 -14.93 -0.15 -8.77 16 22 H 0.12 3.86 7.39 -52.48 -0.39 3.47 16 23 C 0.04 1.13 5.50 -17.46 -0.10 1.03 16 24 N -0.88 -25.72 13.96 55.50 0.77 -24.95 16 25 Si 0.88 19.34 27.74 -169.99 -4.71 14.62 16 26 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 27 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 28 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16 29 C 0.11 1.39 6.64 -3.06 -0.02 1.37 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.95 6.21 -51.93 -0.32 0.63 16 33 H 0.07 0.55 8.07 -51.93 -0.42 0.13 16 34 H 0.08 0.95 6.58 -51.93 -0.34 0.61 16 35 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 36 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 37 H 0.13 0.52 8.06 -52.49 -0.42 0.09 16 38 H 0.13 0.82 6.01 -52.49 -0.32 0.50 16 39 H 0.08 0.56 7.36 -51.93 -0.38 0.18 16 40 H 0.07 0.40 6.98 -51.93 -0.36 0.04 16 41 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.36 5.21 8.13 -39.29 -0.32 4.89 16 44 H 0.05 0.63 8.08 -51.93 -0.42 0.21 16 45 H 0.09 1.28 8.14 -51.94 -0.42 0.86 16 46 H 0.37 7.67 5.76 -40.82 -0.24 7.43 16 47 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 48 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.09 1.30 8.03 -51.93 -0.42 0.88 16 LS Contribution 394.98 15.07 5.95 5.95 Total: -1.00 -34.61 394.98 -9.64 -44.25 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: -7.30 Total: 12.38 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: -3.25 Total: 2.07 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: -0.48 Total: -56.32 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: 0.16 Total: -22.95 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -4.71 Total: 14.62 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.61 -9.64 -44.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480619566.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.544 kcal (2) G-P(sol) polarization free energy of solvation -34.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds