Wall clock time and date at job start Sat Apr 11 2020 07:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50700 * 109.47009 * 2 1 4 4 C 1.37976 * 120.07773 * 267.91616 * 3 2 1 5 5 C 1.38336 * 120.14645 * 179.97438 * 4 3 2 6 6 C 1.38384 * 120.29324 * 0.02562 * 5 4 3 7 7 C 1.37938 * 120.14382 * 359.74331 * 6 5 4 8 8 C 1.39563 * 120.06999 * 87.90069 * 3 2 1 9 9 C 1.47847 * 120.14300 * 359.97438 * 8 3 2 10 10 O 1.21554 * 120.00196 * 321.33928 * 9 8 3 11 11 N 1.34783 * 119.99742 * 141.34379 * 9 8 3 12 12 C 1.47424 * 125.64787 * 354.75767 * 11 9 8 13 13 C 1.54910 * 104.83174 * 204.09368 * 12 11 9 14 14 C 1.55157 * 101.57631 * 322.98648 * 13 12 11 15 15 H 1.08999 * 110.72439 * 277.13988 * 14 13 12 16 16 N 1.46904 * 110.71773 * 153.86565 * 14 13 12 17 17 C 1.46902 * 110.99945 * 154.99923 * 16 14 13 18 18 C 1.50701 * 109.46800 * 180.02562 * 17 16 14 19 19 O 1.21286 * 120.00548 * 359.97438 * 18 17 16 20 20 N 1.34779 * 119.99455 * 179.97438 * 18 17 16 21 21 C 1.37099 * 119.99692 * 179.97438 * 20 18 17 22 22 H 1.08003 * 120.00012 * 359.97438 * 21 20 18 23 23 C 1.38953 * 119.99881 * 180.02562 * 21 20 18 24 24 N 1.31419 * 119.99729 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 119.99983 * 359.97438 * 23 21 20 26 26 H 1.48496 * 109.46926 * 90.00593 * 25 23 21 27 27 H 1.48507 * 109.46716 * 210.00218 * 25 23 21 28 28 H 1.48501 * 109.47220 * 330.00084 * 25 23 21 29 29 C 1.47023 * 125.64747 * 174.44327 * 11 9 8 30 30 H 1.09000 * 109.47188 * 59.99920 * 1 2 3 31 31 H 1.09001 * 109.47411 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47088 * 299.99660 * 1 2 3 33 33 H 1.08999 * 109.47088 * 240.00340 * 2 1 3 34 34 H 1.09006 * 109.46783 * 120.00234 * 2 1 3 35 35 H 1.08005 * 119.92488 * 359.97438 * 4 3 2 36 36 H 1.07995 * 119.85219 * 180.02562 * 5 4 3 37 37 H 1.07995 * 119.92568 * 179.97438 * 6 5 4 38 38 H 1.07998 * 120.07602 * 180.27897 * 7 6 5 39 39 H 1.09003 * 110.36444 * 322.92983 * 12 11 9 40 40 H 1.08995 * 110.37067 * 85.25184 * 12 11 9 41 41 H 1.09001 * 111.00424 * 81.05795 * 13 12 11 42 42 H 1.08996 * 111.00356 * 204.91746 * 13 12 11 43 43 H 1.00904 * 110.99791 * 31.04545 * 16 14 13 44 44 H 1.09007 * 109.46795 * 299.99833 * 17 16 14 45 45 H 1.08989 * 109.47086 * 60.00025 * 17 16 14 46 46 H 0.96998 * 120.00328 * 359.97438 * 20 18 17 47 47 H 0.97000 * 119.99444 * 179.97438 * 24 23 21 48 48 H 1.08997 * 109.88188 * 298.39879 * 29 11 9 49 49 H 1.09004 * 109.87516 * 59.56165 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3038 2.0583 -1.1932 5 6 2.7644 3.3627 -1.1949 6 6 2.9566 4.0367 -0.0016 7 6 2.6846 3.4126 1.1980 8 6 2.2237 2.0949 1.2070 9 6 1.9341 1.4183 2.4892 10 8 0.9716 0.6819 2.5841 11 7 2.7372 1.6181 3.5531 12 6 3.9913 2.3931 3.5493 13 6 4.8094 1.8293 4.7378 14 6 3.6946 1.5580 5.7823 15 1 3.4450 2.4694 6.3256 16 7 4.0992 0.4928 6.7096 17 6 3.3940 0.6156 7.9924 18 6 3.8345 -0.4912 8.9155 19 8 4.6546 -1.3027 8.5415 20 7 3.3168 -0.5792 10.1569 21 6 3.7171 -1.5864 10.9965 22 1 4.4468 -2.3095 10.6632 23 6 3.1830 -1.6775 12.2761 24 7 3.5671 -2.6427 13.0812 25 14 1.9204 -0.4273 12.8525 26 1 0.5568 -0.9108 12.5178 27 1 2.0356 -0.2491 14.3223 28 1 2.1652 0.8716 12.1756 29 6 2.5043 1.1047 4.9109 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 2.1563 1.5377 -2.1279 36 1 2.9750 3.8573 -2.1316 37 1 3.3169 5.0547 -0.0098 38 1 2.8307 3.9411 2.1285 39 1 4.5283 2.2410 2.6131 40 1 3.7832 3.4522 3.7006 41 1 5.3171 0.9058 4.4595 42 1 5.5203 2.5679 5.1081 43 1 5.0991 0.4920 6.8452 44 1 3.6273 1.5797 8.4444 45 1 2.3196 0.5433 7.8247 46 1 2.6612 0.0699 10.4562 47 1 3.1946 -2.7060 13.9745 48 1 1.5750 1.5135 5.3075 49 1 2.4544 0.0159 4.8919 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480619566.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:33:34 Heat of formation + Delta-G solvation = -59.134317 kcal Electronic energy + Delta-G solvation = -29510.584411 eV Core-core repulsion = 25436.484853 eV Total energy + Delta-G solvation = -4074.099558 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.64277 -40.40089 -39.73399 -38.57034 -36.29643 -35.70180 -34.88189 -33.75960 -32.64749 -31.49741 -30.35643 -29.69552 -28.03506 -26.02088 -25.01511 -24.63118 -23.41146 -22.37563 -21.45643 -21.29644 -20.49617 -20.20439 -18.50929 -17.90364 -17.50922 -17.26910 -16.91162 -16.67826 -16.48242 -16.27814 -15.76066 -15.51092 -15.14559 -14.97183 -14.78566 -14.68737 -14.58376 -14.36601 -14.33420 -14.04490 -13.88103 -13.81728 -13.50488 -13.20200 -13.05641 -12.88934 -12.74256 -12.66415 -12.43015 -12.41919 -12.20688 -11.98153 -11.81684 -11.80253 -11.72570 -11.52703 -10.88856 -10.45607 -10.25957 -9.93170 -9.75729 -9.60227 -9.41815 -8.42202 -6.03234 -0.01611 0.41791 1.29119 1.35488 1.43836 1.70409 1.89521 1.94254 2.22329 2.70633 2.82223 3.14070 3.28495 3.39302 3.57343 3.72756 3.78864 3.91044 4.10941 4.12588 4.16922 4.28341 4.29937 4.34118 4.43257 4.47036 4.52745 4.55425 4.55727 4.59023 4.62505 4.76240 4.85965 4.90109 4.95662 4.98998 5.06259 5.11422 5.15377 5.26673 5.40051 5.41388 5.51888 5.53535 5.61105 5.89464 5.98841 6.02998 6.34528 6.45624 6.58533 6.86948 7.07566 7.38516 7.95015 8.75392 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.021093 B = 0.001919 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.124673 B =14584.959441 C =15060.578612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.084 4.084 3 C -0.047 4.047 4 C -0.130 4.130 5 C -0.091 4.091 6 C -0.129 4.129 7 C -0.087 4.087 8 C -0.149 4.149 9 C 0.563 3.437 10 O -0.569 6.569 11 N -0.612 5.612 12 C 0.102 3.898 13 C -0.130 4.130 14 C 0.082 3.918 15 H 0.092 0.908 16 N -0.680 5.680 17 C 0.062 3.938 18 C 0.448 3.552 19 O -0.615 6.615 20 N -0.591 5.591 21 C -0.329 4.329 22 H 0.055 0.945 23 C -0.016 4.016 24 N -0.934 5.934 25 Si 0.965 3.035 26 H -0.260 1.260 27 H -0.274 1.274 28 H -0.228 1.228 29 C 0.114 3.886 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.047 0.953 33 H 0.086 0.914 34 H 0.046 0.954 35 H 0.145 0.855 36 H 0.156 0.844 37 H 0.158 0.842 38 H 0.144 0.856 39 H 0.088 0.912 40 H 0.102 0.898 41 H 0.072 0.928 42 H 0.118 0.882 43 H 0.355 0.645 44 H 0.088 0.912 45 H 0.107 0.893 46 H 0.390 0.610 47 H 0.279 0.721 48 H 0.065 0.935 49 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.401 23.254 -29.272 37.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.122 4.122 3 C -0.048 4.048 4 C -0.148 4.148 5 C -0.109 4.109 6 C -0.147 4.147 7 C -0.105 4.105 8 C -0.152 4.152 9 C 0.354 3.646 10 O -0.449 6.449 11 N -0.346 5.346 12 C -0.020 4.020 13 C -0.168 4.168 14 C -0.028 4.028 15 H 0.110 0.890 16 N -0.314 5.314 17 C -0.070 4.070 18 C 0.236 3.764 19 O -0.499 6.499 20 N -0.232 5.232 21 C -0.458 4.458 22 H 0.073 0.927 23 C -0.215 4.215 24 N -0.575 5.575 25 Si 0.785 3.215 26 H -0.185 1.185 27 H -0.199 1.199 28 H -0.151 1.151 29 C -0.010 4.010 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.104 0.896 34 H 0.065 0.935 35 H 0.163 0.837 36 H 0.173 0.827 37 H 0.175 0.825 38 H 0.162 0.838 39 H 0.107 0.893 40 H 0.120 0.880 41 H 0.091 0.909 42 H 0.136 0.864 43 H 0.176 0.824 44 H 0.105 0.895 45 H 0.125 0.875 46 H 0.226 0.774 47 H 0.089 0.911 48 H 0.083 0.917 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.837 21.737 -29.569 36.809 hybrid contribution -0.269 0.113 1.540 1.567 sum -3.105 21.851 -28.030 35.676 Atomic orbital electron populations 1.21657 0.94223 1.01721 1.01791 1.20535 0.97025 0.92536 1.02078 1.20085 0.95972 0.96280 0.92472 1.21267 1.00413 0.96005 0.97136 1.21736 0.95570 0.93836 0.99732 1.21471 1.00281 1.01470 0.91432 1.21597 0.96020 0.92531 1.00368 1.19719 1.07046 0.96718 0.91672 1.18517 0.81798 0.80705 0.83598 1.90754 1.30715 1.39108 1.84314 1.48430 1.24647 1.52745 1.08732 1.22675 0.82987 0.96398 0.99945 1.23041 0.96951 1.02859 0.93965 1.22560 0.94783 0.92605 0.92847 0.89015 1.59866 1.12347 1.48376 1.10847 1.21709 1.00766 0.95583 0.88966 1.20996 0.84080 0.88667 0.82686 1.90548 1.37603 1.45701 1.76059 1.42034 1.40520 1.27692 1.12997 1.19007 1.24307 1.07154 0.95353 0.92707 1.26142 1.00402 0.99767 0.95189 1.69811 1.44928 1.33865 1.08858 0.85361 0.78160 0.79167 0.78808 1.18482 1.19924 1.15144 1.21954 0.98601 0.98912 0.81489 0.91851 0.92678 0.93363 0.89570 0.93506 0.83739 0.82682 0.82469 0.83802 0.89334 0.88013 0.90924 0.86393 0.82400 0.89466 0.87508 0.77446 0.91147 0.91663 0.93421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 9.57 71.98 0.69 -2.26 16 2 C -0.08 -1.78 5.32 29.85 0.16 -1.62 16 3 C -0.05 -0.89 5.16 -19.61 -0.10 -0.99 16 4 C -0.13 -1.67 9.68 22.23 0.22 -1.45 16 5 C -0.09 -0.81 10.04 22.33 0.22 -0.58 16 6 C -0.13 -1.12 10.03 22.23 0.22 -0.90 16 7 C -0.09 -1.12 8.23 22.53 0.19 -0.93 16 8 C -0.15 -2.95 5.35 -20.09 -0.11 -3.06 16 9 C 0.56 14.56 6.84 86.79 0.59 15.15 16 10 O -0.57 -19.13 13.28 -3.89 -0.05 -19.18 16 11 N -0.61 -13.16 3.32 -815.17 -2.71 -15.87 16 12 C 0.10 1.28 5.26 86.86 0.46 1.74 16 13 C -0.13 -1.80 6.47 31.99 0.21 -1.59 16 14 C 0.08 1.56 3.27 46.11 0.15 1.71 16 15 H 0.09 1.29 7.83 -2.39 -0.02 1.28 16 16 N -0.68 -18.87 5.95 -489.43 -2.91 -21.78 16 17 C 0.06 1.82 6.03 85.56 0.52 2.33 16 18 C 0.45 20.09 7.82 87.66 0.69 20.78 16 19 O -0.61 -34.13 15.78 -3.05 -0.05 -34.18 16 20 N -0.59 -27.86 5.09 -306.98 -1.56 -29.42 16 21 C -0.33 -19.41 10.16 84.04 0.85 -18.55 16 22 H 0.05 3.86 7.39 -2.91 -0.02 3.83 16 23 C -0.02 -0.92 5.50 84.93 0.47 -0.45 16 24 N -0.93 -56.73 13.96 21.67 0.30 -56.43 16 25 Si 0.97 38.93 27.74 68.60 1.90 40.84 16 26 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 27 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 28 H -0.23 -7.62 6.52 99.48 0.65 -6.97 16 29 C 0.11 2.76 6.64 86.73 0.58 3.33 16 30 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.05 1.31 6.21 -2.39 -0.01 1.30 16 33 H 0.09 1.40 8.07 -2.39 -0.02 1.38 16 34 H 0.05 1.26 6.58 -2.38 -0.02 1.24 16 35 H 0.14 1.26 8.06 -2.91 -0.02 1.23 16 36 H 0.16 0.45 8.06 -2.91 -0.02 0.43 16 37 H 0.16 0.43 8.06 -2.91 -0.02 0.40 16 38 H 0.14 1.30 6.01 -2.91 -0.02 1.28 16 39 H 0.09 1.01 7.36 -2.39 -0.02 1.00 16 40 H 0.10 0.70 6.98 -2.39 -0.02 0.68 16 41 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.36 10.10 8.13 -89.69 -0.73 9.37 16 44 H 0.09 1.93 8.08 -2.38 -0.02 1.91 16 45 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 46 H 0.39 15.14 5.76 -92.71 -0.53 14.60 16 47 H 0.28 15.48 8.31 -92.71 -0.77 14.70 16 48 H 0.07 1.55 8.14 -2.39 -0.02 1.54 16 49 H 0.05 1.52 8.03 -2.38 -0.02 1.50 16 Total: -1.00 -85.70 394.98 0.58 -85.12 By element: Atomic # 1 Polarization: 38.59 SS G_CDS: -0.34 Total: 38.25 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: 5.99 Total: 12.65 kcal Atomic # 7 Polarization: -116.62 SS G_CDS: -6.88 Total: -123.50 kcal Atomic # 8 Polarization: -53.26 SS G_CDS: -0.10 Total: -53.36 kcal Atomic # 14 Polarization: 38.93 SS G_CDS: 1.90 Total: 40.84 kcal Total: -85.70 0.58 -85.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480619566.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.990 kcal (2) G-P(sol) polarization free energy of solvation -85.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds