Wall clock time and date at job start Sat Apr 11 2020 07:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.47498 * 2 1 4 4 C 1.37980 * 120.07756 * 95.87369 * 3 2 1 5 5 C 1.38338 * 120.14463 * 179.70441 * 4 3 2 6 6 C 1.38384 * 120.29179 * 0.29853 * 5 4 3 7 7 C 1.37937 * 120.14647 * 359.97438 * 6 5 4 8 8 C 1.39563 * 120.07207 * 276.12709 * 3 2 1 9 9 C 1.47849 * 120.14287 * 0.04056 * 8 3 2 10 10 O 1.21551 * 119.99964 * 6.23352 * 9 8 3 11 11 N 1.34778 * 119.99889 * 186.23039 * 9 8 3 12 12 C 1.46498 * 119.99885 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.47002 * 180.02562 * 12 11 9 14 14 C 1.53941 * 113.73168 * 271.72528 * 13 12 11 15 15 N 1.47960 * 86.18049 * 221.92095 * 14 13 12 16 16 C 1.46899 * 110.99793 * 137.57869 * 15 14 13 17 17 C 1.50709 * 109.47060 * 70.64077 * 16 15 14 18 18 O 1.21292 * 119.99776 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99926 * 179.97438 * 17 16 15 20 20 C 1.37096 * 119.99563 * 180.02562 * 19 17 16 21 21 H 1.07994 * 120.00388 * 0.02562 * 20 19 17 22 22 C 1.38955 * 119.99692 * 180.02562 * 20 19 17 23 23 N 1.31419 * 119.99750 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 119.99975 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47067 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47629 * 119.99547 * 24 22 20 27 27 H 1.48506 * 109.47134 * 239.99553 * 24 22 20 28 28 C 1.47964 * 90.76259 * 24.69155 * 15 14 13 29 29 H 1.08995 * 109.47247 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47014 * 300.00662 * 1 2 3 31 31 H 1.08995 * 109.46419 * 60.00337 * 1 2 3 32 32 H 1.08998 * 109.47376 * 239.99144 * 2 1 3 33 33 H 1.09001 * 109.47059 * 119.99453 * 2 1 3 34 34 H 1.08001 * 119.92468 * 359.97438 * 4 3 2 35 35 H 1.07997 * 119.85333 * 180.27486 * 5 4 3 36 36 H 1.08001 * 119.92623 * 179.97438 * 6 5 4 37 37 H 1.07998 * 120.07205 * 180.02562 * 7 6 5 38 38 H 0.96997 * 119.99649 * 0.02562 * 11 9 8 39 39 H 1.09007 * 109.46833 * 299.99650 * 12 11 9 40 40 H 1.09000 * 109.47381 * 59.99765 * 12 11 9 41 41 H 1.08998 * 112.94249 * 43.42525 * 13 12 11 42 42 H 1.09002 * 113.75714 * 336.23781 * 14 13 12 43 43 H 1.08997 * 113.76037 * 107.59887 * 14 13 12 44 44 H 1.09004 * 109.46996 * 190.63748 * 16 15 14 45 45 H 1.09000 * 109.48074 * 310.64160 * 16 15 14 46 46 H 0.97000 * 120.00177 * 0.02562 * 19 17 16 47 47 H 0.97004 * 119.99250 * 180.02562 * 23 22 20 48 48 H 1.09006 * 113.75548 * 220.99494 * 28 15 14 49 49 H 1.08999 * 113.76139 * 89.62872 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3782 2.0320 1.1877 5 6 2.8453 3.3341 1.1887 6 6 2.9633 4.0342 0.0009 7 6 2.6158 3.4368 -1.1928 8 6 2.1441 2.1231 -1.2009 9 6 1.7692 1.4766 -2.4766 10 8 1.2572 0.3742 -2.4719 11 7 1.9952 2.1097 -3.6448 12 6 1.6233 1.4694 -4.9089 13 6 1.9852 2.3926 -6.0740 14 6 0.8715 3.3889 -6.4440 15 7 1.2012 3.0818 -7.8533 16 6 -0.0184 2.9266 -8.6574 17 6 -0.6793 4.2698 -8.8320 18 8 -0.1829 5.2590 -8.3358 19 7 -1.8213 4.3719 -9.5404 20 6 -2.4222 5.5938 -9.6996 21 1 -1.9802 6.4746 -9.2578 22 6 -3.5999 5.6990 -10.4295 23 7 -4.1374 4.6273 -10.9675 24 14 -4.4183 7.3640 -10.6471 25 1 -3.6194 8.4032 -9.9492 26 1 -4.5000 7.6903 -12.0935 27 1 -5.7864 7.3222 -10.0710 28 6 1.7475 1.7644 -7.4591 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.2880 1.4911 2.1182 35 1 3.1188 3.8064 2.1206 36 1 3.3283 5.0507 0.0086 37 1 2.7087 3.9842 -2.1191 38 1 2.4041 2.9893 -3.6485 39 1 2.1622 0.5274 -5.0113 40 1 0.5505 1.2770 -4.9169 41 1 2.9675 2.8517 -5.9631 42 1 -0.1253 3.0642 -6.1453 43 1 1.0889 4.4175 -6.1561 44 1 0.2403 2.5192 -9.6348 45 1 -0.7040 2.2476 -8.1506 46 1 -2.2181 3.5808 -9.9375 47 1 -4.9594 4.7008 -11.4773 48 1 2.6650 1.4951 -7.9824 49 1 1.0070 0.9646 -7.4574 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481641451.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:33:37 Heat of formation + Delta-G solvation = -36.576790 kcal Electronic energy + Delta-G solvation = -29136.197393 eV Core-core repulsion = 25063.076002 eV Total energy + Delta-G solvation = -4073.121390 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.63541 -41.12645 -39.64532 -39.13180 -36.25445 -35.91639 -34.64622 -33.34986 -32.74000 -31.59575 -30.37630 -28.62155 -27.07746 -26.74515 -25.16702 -24.38717 -23.73862 -21.96783 -21.64917 -21.01023 -20.55279 -19.91160 -18.72853 -17.86506 -17.44068 -16.86579 -16.71742 -16.66239 -16.41590 -16.32043 -16.05593 -15.80126 -15.67737 -15.29618 -14.94689 -14.78053 -14.59545 -14.32002 -13.99820 -13.91927 -13.68673 -13.55643 -13.40930 -13.11028 -13.08353 -12.86852 -12.67674 -12.51812 -12.44044 -12.33083 -12.13490 -11.99601 -11.75556 -11.72712 -11.63606 -11.51182 -10.62468 -10.35178 -10.18269 -10.03873 -9.88149 -9.69899 -9.64814 -8.49034 -5.97866 -0.10497 0.41032 1.34655 1.39815 1.54154 1.88550 2.02230 2.12257 2.27083 2.81309 2.87591 3.17414 3.25651 3.44355 3.66432 3.73197 3.80597 3.87860 4.14267 4.17428 4.19076 4.29358 4.33878 4.38366 4.48837 4.50319 4.51240 4.54160 4.58317 4.61551 4.64010 4.69509 4.83898 4.88454 4.92133 4.99774 5.10968 5.16226 5.24028 5.33281 5.37513 5.38034 5.41449 5.51738 5.52501 5.65208 5.88670 5.97298 6.06575 6.50532 6.57472 7.10217 7.19615 7.53261 8.08722 8.68662 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014161 B = 0.001892 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.844072 B =14798.780091 C =15282.862664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.090 4.090 3 C -0.038 4.038 4 C -0.136 4.136 5 C -0.088 4.088 6 C -0.137 4.137 7 C -0.088 4.088 8 C -0.160 4.160 9 C 0.549 3.451 10 O -0.559 6.559 11 N -0.716 5.716 12 C 0.137 3.863 13 C -0.105 4.105 14 C 0.018 3.982 15 N -0.481 5.481 16 C 0.022 3.978 17 C 0.440 3.560 18 O -0.618 6.618 19 N -0.575 5.575 20 C -0.332 4.332 21 H 0.078 0.922 22 C -0.015 4.015 23 N -0.921 5.921 24 Si 0.994 3.006 25 H -0.273 1.273 26 H -0.270 1.270 27 H -0.270 1.270 28 C 0.016 3.984 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.036 0.964 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.146 0.854 35 H 0.154 0.846 36 H 0.152 0.848 37 H 0.141 0.859 38 H 0.411 0.589 39 H 0.080 0.920 40 H 0.056 0.944 41 H 0.121 0.879 42 H 0.057 0.943 43 H 0.071 0.929 44 H 0.109 0.891 45 H 0.074 0.926 46 H 0.396 0.604 47 H 0.278 0.722 48 H 0.112 0.888 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.272 -9.009 22.596 28.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.127 4.127 3 C -0.039 4.039 4 C -0.153 4.153 5 C -0.106 4.106 6 C -0.155 4.155 7 C -0.106 4.106 8 C -0.163 4.163 9 C 0.339 3.661 10 O -0.440 6.440 11 N -0.369 5.369 12 C 0.013 3.987 13 C -0.124 4.124 14 C -0.111 4.111 15 N -0.204 5.204 16 C -0.110 4.110 17 C 0.227 3.773 18 O -0.504 6.504 19 N -0.213 5.213 20 C -0.462 4.462 21 H 0.096 0.904 22 C -0.215 4.215 23 N -0.562 5.562 24 Si 0.817 3.183 25 H -0.198 1.198 26 H -0.195 1.195 27 H -0.196 1.196 28 C -0.113 4.113 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.055 0.945 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.164 0.836 35 H 0.172 0.828 36 H 0.170 0.830 37 H 0.159 0.841 38 H 0.248 0.752 39 H 0.098 0.902 40 H 0.074 0.926 41 H 0.139 0.861 42 H 0.075 0.925 43 H 0.089 0.911 44 H 0.127 0.873 45 H 0.092 0.908 46 H 0.229 0.771 47 H 0.087 0.913 48 H 0.130 0.870 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 15.442 -8.702 22.355 28.529 hybrid contribution -1.439 0.330 -0.448 1.543 sum 14.003 -8.372 21.907 27.315 Atomic orbital electron populations 1.21528 0.94724 1.01647 1.00721 1.20733 0.96499 0.92244 1.03256 1.20220 0.94983 0.96462 0.92239 1.21336 1.00401 0.96060 0.97542 1.21748 0.95501 0.93913 0.99475 1.21462 1.00653 1.01471 0.91920 1.21567 0.95965 0.93023 1.00094 1.19844 1.07298 0.96281 0.92859 1.18611 0.78092 0.85005 0.84427 1.90710 1.44581 1.21051 1.87638 1.45887 1.63301 1.22299 1.05363 1.21327 1.00050 0.96083 0.81251 1.23146 1.00142 0.95728 0.93427 1.23835 0.97563 1.00450 0.89232 1.68407 1.21814 1.20972 1.09172 1.22362 0.93158 0.93647 1.01789 1.20766 0.82303 0.91688 0.82510 1.90480 1.65895 1.40460 1.53558 1.41967 1.21996 1.10010 1.47290 1.19684 1.06407 0.87542 1.32518 0.90367 1.26071 0.96919 1.02691 0.95780 1.69686 1.21310 1.30049 1.35125 0.84861 0.77906 0.77180 0.78328 1.19773 1.19524 1.19570 1.24085 1.01989 0.91356 0.93873 0.92256 0.92606 0.94515 0.90310 0.90214 0.83589 0.82822 0.83047 0.84107 0.75212 0.90162 0.92559 0.86130 0.92502 0.91094 0.87296 0.90821 0.77058 0.91293 0.87025 0.89674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.62 9.46 71.98 0.68 -1.94 16 2 C -0.09 -1.75 5.32 29.85 0.16 -1.59 16 3 C -0.04 -0.71 5.17 -19.61 -0.10 -0.81 16 4 C -0.14 -1.86 9.67 22.23 0.21 -1.64 16 5 C -0.09 -0.97 10.04 22.33 0.22 -0.75 16 6 C -0.14 -1.62 10.03 22.23 0.22 -1.40 16 7 C -0.09 -1.32 9.53 22.53 0.21 -1.10 16 8 C -0.16 -3.17 5.87 -20.09 -0.12 -3.29 16 9 C 0.55 12.71 7.69 86.79 0.67 13.38 16 10 O -0.56 -15.99 11.74 -3.88 -0.05 -16.04 16 11 N -0.72 -13.51 5.51 -465.97 -2.57 -16.07 16 12 C 0.14 2.65 5.53 86.38 0.48 3.12 16 13 C -0.11 -2.07 3.94 -10.15 -0.04 -2.11 16 14 C 0.02 0.54 6.31 86.41 0.55 1.08 16 15 N -0.48 -15.08 5.95 -912.30 -5.43 -20.50 16 16 C 0.02 0.77 5.31 85.56 0.45 1.22 16 17 C 0.44 21.30 7.59 87.66 0.67 21.96 16 18 O -0.62 -34.53 15.13 -3.07 -0.05 -34.58 16 19 N -0.58 -30.05 5.29 -306.98 -1.62 -31.67 16 20 C -0.33 -19.11 9.68 84.04 0.81 -18.29 16 21 H 0.08 4.81 7.16 -2.91 -0.02 4.78 16 22 C -0.02 -0.81 5.50 84.93 0.47 -0.35 16 23 N -0.92 -50.23 13.05 21.67 0.28 -49.95 16 24 Si 0.99 43.36 29.55 68.60 2.03 45.39 16 25 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 26 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 27 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 28 C 0.02 0.32 7.54 86.41 0.65 0.97 16 29 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.04 0.93 6.81 -2.39 -0.02 0.91 16 32 H 0.08 1.89 5.82 -2.39 -0.01 1.87 16 33 H 0.08 1.18 8.05 -2.39 -0.02 1.16 16 34 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 35 H 0.15 0.79 8.06 -2.91 -0.02 0.77 16 36 H 0.15 1.04 8.06 -2.91 -0.02 1.02 16 37 H 0.14 1.55 6.45 -2.91 -0.02 1.54 16 38 H 0.41 5.95 6.54 -92.71 -0.61 5.34 16 39 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 40 H 0.06 1.29 7.84 -2.39 -0.02 1.27 16 41 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.06 1.77 7.53 -2.39 -0.02 1.75 16 43 H 0.07 2.38 8.09 -2.39 -0.02 2.36 16 44 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 45 H 0.07 2.28 7.69 -2.39 -0.02 2.26 16 46 H 0.40 19.65 7.90 -92.71 -0.73 18.92 16 47 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 48 H 0.11 1.91 8.14 -2.38 -0.02 1.89 16 49 H 0.09 1.57 7.75 -2.39 -0.02 1.55 16 Total: -1.00 -74.85 400.66 -1.55 -76.40 By element: Atomic # 1 Polarization: 38.89 SS G_CDS: -0.36 Total: 38.53 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: 6.20 Total: 8.48 kcal Atomic # 7 Polarization: -108.86 SS G_CDS: -9.33 Total: -118.19 kcal Atomic # 8 Polarization: -50.52 SS G_CDS: -0.09 Total: -50.61 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -74.85 -1.55 -76.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481641451.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.827 kcal (2) G-P(sol) polarization free energy of solvation -74.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds