Wall clock time and date at job start Sat Apr 11 2020 07:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30089 * 124.87546 * 2 1 4 4 C 1.35583 * 108.83866 * 180.02562 * 3 2 1 5 5 C 1.40292 * 106.62151 * 359.97438 * 4 3 2 6 6 C 1.38583 * 119.92930 * 180.02562 * 5 4 3 7 7 C 1.38214 * 120.21043 * 0.02562 * 6 5 4 8 8 C 1.38184 * 120.67549 * 359.97438 * 7 6 5 9 9 C 1.39354 * 120.24454 * 0.25579 * 8 7 6 10 10 C 1.47429 * 120.30193 * 179.74046 * 9 8 7 11 11 O 1.21604 * 119.99895 * 131.91749 * 10 9 8 12 12 N 1.34777 * 120.00326 * 311.92234 * 10 9 8 13 13 C 1.46504 * 119.99549 * 4.11565 * 12 10 9 14 14 C 1.46498 * 120.00342 * 184.12051 * 12 10 9 15 15 C 1.53000 * 109.47192 * 89.99706 * 14 12 10 16 16 C 1.52994 * 109.46940 * 300.00113 * 15 14 12 17 17 C 1.53004 * 109.47042 * 60.00219 * 15 14 12 18 18 C 1.53004 * 109.46984 * 180.02562 * 15 14 12 19 19 N 1.46498 * 109.47103 * 180.02562 * 18 15 14 20 20 C 1.36935 * 120.00141 * 180.02562 * 19 18 15 21 21 H 1.07994 * 119.99878 * 359.97438 * 20 19 18 22 22 C 1.38806 * 119.99858 * 179.97438 * 20 19 18 23 23 N 1.31620 * 120.00476 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 119.99965 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46860 * 359.97438 * 24 22 20 26 26 H 1.48492 * 109.47468 * 119.99664 * 24 22 20 27 27 H 1.48505 * 109.47064 * 240.00248 * 24 22 20 28 28 O 1.34132 * 124.88364 * 180.02562 * 2 1 3 29 29 H 1.08990 * 109.47170 * 90.00103 * 1 2 3 30 30 H 1.08997 * 109.46697 * 210.00188 * 1 2 3 31 31 H 1.09005 * 109.47433 * 329.99571 * 1 2 3 32 32 H 1.07995 * 119.89690 * 180.02562 * 6 5 4 33 33 H 1.08000 * 119.66267 * 179.97438 * 7 6 5 34 34 H 1.08008 * 119.87574 * 179.97438 * 8 7 6 35 35 H 1.09004 * 109.46664 * 90.53327 * 13 12 10 36 36 H 1.09001 * 109.47114 * 210.52758 * 13 12 10 37 37 H 1.09003 * 109.47289 * 330.53055 * 13 12 10 38 38 H 1.08999 * 109.46876 * 209.99954 * 14 12 10 39 39 H 1.09002 * 109.46860 * 329.99589 * 14 12 10 40 40 H 1.08996 * 109.47396 * 59.99971 * 16 15 14 41 41 H 1.09007 * 109.47167 * 179.97438 * 16 15 14 42 42 H 1.08997 * 109.47440 * 299.99763 * 16 15 14 43 43 H 1.08998 * 109.46867 * 59.99974 * 17 15 14 44 44 H 1.08997 * 109.46929 * 180.02562 * 17 15 14 45 45 H 1.08996 * 109.46915 * 299.99797 * 17 15 14 46 46 H 1.08999 * 109.46867 * 300.00115 * 18 15 14 47 47 H 1.09002 * 109.47077 * 59.99877 * 18 15 14 48 48 H 0.97006 * 119.99991 * 359.97438 * 19 18 15 49 49 H 0.96995 * 120.00461 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2509 1.0672 0.0000 4 6 3.5539 0.6927 -0.0006 5 6 3.5683 -0.7102 -0.0003 6 6 4.7763 -1.3893 -0.0003 7 6 5.9678 -0.6890 0.0001 8 6 5.9734 0.6929 -0.0001 9 6 4.7724 1.3996 0.0046 10 6 4.7769 2.8739 0.0102 11 8 4.0738 3.4870 -0.7699 12 7 5.5602 3.5422 0.8797 13 6 6.4739 2.8064 1.7573 14 6 5.4981 5.0043 0.9475 15 6 4.4420 5.4229 1.9723 16 6 3.0774 4.8734 1.5520 17 6 4.8155 4.8642 3.3468 18 6 4.3766 6.9500 2.0426 19 7 3.3658 7.3508 3.0243 20 6 3.1286 8.6788 3.2595 21 1 3.6869 9.4306 2.7216 22 6 2.1705 9.0586 4.1894 23 7 1.4897 8.1423 4.8446 24 14 1.8474 10.8702 4.5108 25 1 2.7382 11.6918 3.6526 26 1 0.4302 11.1836 4.1970 27 1 2.1174 11.1754 5.9389 28 8 2.2741 -1.1003 -0.0005 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3632 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5139 32 1 4.7867 -2.4692 -0.0005 33 1 6.9042 -1.2272 0.0006 34 1 6.9121 1.2271 0.0006 35 1 7.4404 2.6966 1.2654 36 1 6.6016 3.3548 2.6907 37 1 6.0596 1.8206 1.9688 38 1 6.4702 5.3958 1.2469 39 1 5.2320 5.4024 -0.0318 40 1 3.1237 3.7855 1.5016 41 1 2.3250 5.1712 2.2824 42 1 2.8113 5.2714 0.5728 43 1 5.7876 5.2557 3.6462 44 1 4.0629 5.1620 4.0768 45 1 4.8617 3.7764 3.2964 46 1 5.3487 7.3418 2.3418 47 1 4.1103 7.3477 1.0632 48 1 2.8641 6.6755 3.5072 49 1 0.8204 8.4077 5.4946 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505850514.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:34:05 Heat of formation + Delta-G solvation = -2.105371 kcal Electronic energy + Delta-G solvation = -31003.012150 eV Core-core repulsion = 26931.385552 eV Total energy + Delta-G solvation = -4071.626597 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 2.69 seconds Orbital eigenvalues (eV) -44.37499 -41.46168 -39.19865 -38.33579 -36.47988 -35.93293 -34.93182 -32.64954 -32.47778 -31.73875 -29.19468 -28.91070 -28.19527 -27.33661 -26.88459 -24.83522 -24.35185 -23.53634 -22.84474 -20.76625 -19.89615 -19.30315 -19.14577 -18.36680 -18.01000 -17.65952 -17.00769 -16.89596 -16.54064 -16.35689 -15.59370 -15.51435 -15.24296 -14.86997 -14.76336 -14.52200 -14.41007 -14.19779 -14.13849 -13.91967 -13.74891 -13.64795 -13.48088 -13.24136 -13.08453 -12.96126 -12.89780 -12.76875 -12.58335 -12.46199 -12.31202 -12.25064 -12.06661 -11.73099 -11.67746 -11.65782 -11.50572 -10.95687 -10.84744 -9.87981 -9.65192 -9.48253 -8.98291 -7.94734 -5.23049 -0.63148 0.04321 1.30801 1.41512 1.45288 1.47118 1.57069 1.60484 1.99061 2.55894 2.57396 2.78717 3.28051 3.38361 3.68797 3.78056 3.81323 3.88377 3.94030 4.03726 4.06290 4.22973 4.25132 4.32481 4.43728 4.52162 4.53253 4.57115 4.61132 4.68220 4.74670 4.78701 4.81515 4.87047 4.89495 4.93522 4.94234 5.11658 5.12949 5.13177 5.16293 5.16650 5.22546 5.38483 5.47687 5.50773 5.54116 5.59384 6.27408 6.34756 6.54760 7.13704 7.33516 8.10229 8.34324 9.29445 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014870 B = 0.002726 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.485487 B =10269.286860 C =11506.904199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.251 3.749 3 N -0.523 5.523 4 C 0.030 3.970 5 C -0.022 4.022 6 C -0.064 4.064 7 C -0.085 4.085 8 C -0.072 4.072 9 C -0.106 4.106 10 C 0.555 3.445 11 O -0.566 6.566 12 N -0.599 5.599 13 C 0.058 3.942 14 C 0.136 3.864 15 C -0.077 4.077 16 C -0.102 4.102 17 C -0.124 4.124 18 C 0.165 3.835 19 N -0.740 5.740 20 C -0.242 4.242 21 H 0.076 0.924 22 C -0.078 4.078 23 N -0.971 5.971 24 Si 0.976 3.024 25 H -0.266 1.266 26 H -0.296 1.296 27 H -0.290 1.290 28 O -0.216 6.216 29 H 0.118 0.882 30 H 0.122 0.878 31 H 0.102 0.898 32 H 0.173 0.827 33 H 0.199 0.801 34 H 0.175 0.825 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.114 0.886 39 H 0.065 0.935 40 H 0.040 0.960 41 H 0.026 0.974 42 H 0.030 0.970 43 H 0.072 0.928 44 H 0.029 0.971 45 H 0.065 0.935 46 H 0.035 0.965 47 H 0.008 0.992 48 H 0.374 0.626 49 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.976 -27.064 -9.531 31.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.041 3.959 3 N -0.254 5.254 4 C -0.083 4.083 5 C -0.072 4.072 6 C -0.082 4.082 7 C -0.102 4.102 8 C -0.091 4.091 9 C -0.110 4.110 10 C 0.344 3.656 11 O -0.444 6.444 12 N -0.331 5.331 13 C -0.083 4.083 14 C 0.013 3.987 15 C -0.079 4.079 16 C -0.159 4.159 17 C -0.181 4.181 18 C 0.038 3.962 19 N -0.383 5.383 20 C -0.374 4.374 21 H 0.094 0.906 22 C -0.270 4.270 23 N -0.623 5.623 24 Si 0.805 3.195 25 H -0.190 1.190 26 H -0.223 1.223 27 H -0.217 1.217 28 O -0.108 6.108 29 H 0.136 0.864 30 H 0.141 0.859 31 H 0.121 0.879 32 H 0.190 0.810 33 H 0.216 0.784 34 H 0.192 0.808 35 H 0.114 0.886 36 H 0.105 0.895 37 H 0.097 0.903 38 H 0.132 0.868 39 H 0.084 0.916 40 H 0.059 0.941 41 H 0.045 0.955 42 H 0.049 0.951 43 H 0.091 0.909 44 H 0.049 0.951 45 H 0.084 0.916 46 H 0.053 0.947 47 H 0.026 0.974 48 H 0.208 0.792 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 12.453 -25.936 -9.965 30.448 hybrid contribution -1.161 0.559 0.426 1.358 sum 11.292 -25.377 -9.539 29.368 Atomic orbital electron populations 1.20717 0.77737 1.06893 1.06752 1.27524 0.98196 0.77520 0.92693 1.70691 1.02241 1.30572 1.21873 1.19916 0.91563 0.92398 1.04380 1.20757 0.85141 0.93490 1.07810 1.20627 0.86170 1.02276 0.99172 1.21530 0.98647 0.92763 0.97282 1.21804 0.96204 0.95442 0.95664 1.19223 0.92094 0.92452 1.07244 1.18429 0.79092 0.87499 0.80570 1.90804 1.42196 1.70061 1.41379 1.47719 1.40646 1.06856 1.37857 1.22485 0.93445 0.97488 0.94928 1.21398 0.99469 0.79244 0.98623 1.21031 0.95359 0.94675 0.96796 1.21464 0.96669 0.98862 0.98950 1.21777 1.01410 1.00297 0.94656 1.20717 0.91983 0.92193 0.91295 1.42602 1.44566 1.04171 1.46985 1.19701 1.15598 0.85198 1.16889 0.90647 1.25585 0.99593 1.01830 1.00027 1.69841 1.28526 1.33395 1.30508 0.85037 0.77188 0.79954 0.77367 1.18989 1.22301 1.21737 1.84476 1.15329 1.36207 1.74799 0.86393 0.85924 0.87928 0.80978 0.78440 0.80792 0.88627 0.89524 0.90309 0.86823 0.91622 0.94108 0.95454 0.95097 0.90913 0.95146 0.91647 0.94714 0.97433 0.79219 0.94084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.93 10.51 71.24 0.75 -0.18 16 2 C 0.25 6.32 8.24 88.37 0.73 7.05 16 3 N -0.52 -17.72 11.32 -295.53 -3.35 -21.07 16 4 C 0.03 0.91 6.91 39.71 0.27 1.18 16 5 C -0.02 -0.51 7.42 22.85 0.17 -0.34 16 6 C -0.06 -0.82 10.05 22.35 0.22 -0.60 16 7 C -0.08 -0.71 10.00 22.25 0.22 -0.49 16 8 C -0.07 -1.00 7.64 22.53 0.17 -0.83 16 9 C -0.11 -2.76 4.94 -19.94 -0.10 -2.86 16 10 C 0.56 17.65 5.52 86.66 0.48 18.13 16 11 O -0.57 -23.74 15.12 -4.04 -0.06 -23.80 16 12 N -0.60 -15.13 2.40 -850.64 -2.04 -17.17 16 13 C 0.06 0.85 7.98 127.77 1.02 1.87 16 14 C 0.14 3.91 4.61 86.38 0.40 4.30 16 15 C -0.08 -2.79 0.60 -52.18 -0.03 -2.83 16 16 C -0.10 -4.40 7.03 71.98 0.51 -3.89 16 17 C -0.12 -4.08 7.05 71.98 0.51 -3.58 16 18 C 0.17 7.16 5.15 86.38 0.44 7.60 16 19 N -0.74 -40.12 5.01 -343.46 -1.72 -41.84 16 20 C -0.24 -14.22 9.99 84.03 0.84 -13.38 16 21 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 22 C -0.08 -4.71 5.50 84.86 0.47 -4.25 16 23 N -0.97 -62.12 13.06 21.65 0.28 -61.84 16 24 Si 0.98 48.05 29.55 68.60 2.03 50.08 16 25 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 26 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 27 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 28 O -0.22 -5.08 10.77 -9.54 -0.10 -5.18 16 29 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.12 1.01 8.14 -2.39 -0.02 1.00 16 31 H 0.10 1.64 8.14 -2.38 -0.02 1.62 16 32 H 0.17 1.00 8.06 -2.91 -0.02 0.98 16 33 H 0.20 -0.30 8.06 -2.91 -0.02 -0.33 16 34 H 0.17 1.27 6.39 -2.91 -0.02 1.25 16 35 H 0.10 0.71 7.38 -2.38 -0.02 0.69 16 36 H 0.09 1.23 6.02 -2.39 -0.01 1.21 16 37 H 0.08 1.09 5.84 -2.39 -0.01 1.08 16 38 H 0.11 2.47 8.07 -2.39 -0.02 2.45 16 39 H 0.07 2.18 7.37 -2.39 -0.02 2.17 16 40 H 0.04 1.73 6.20 -2.39 -0.01 1.72 16 41 H 0.03 1.30 6.86 -2.38 -0.02 1.29 16 42 H 0.03 1.43 7.82 -2.39 -0.02 1.41 16 43 H 0.07 2.05 8.08 -2.39 -0.02 2.03 16 44 H 0.03 1.22 6.86 -2.39 -0.02 1.20 16 45 H 0.06 1.86 5.98 -2.39 -0.01 1.85 16 46 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 47 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 48 H 0.37 21.73 5.36 -92.70 -0.50 21.23 16 49 H 0.25 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -90.66 388.90 2.60 -88.06 By element: Atomic # 1 Polarization: 25.36 SS G_CDS: 0.49 Total: 25.85 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: 7.07 Total: 6.92 kcal Atomic # 7 Polarization: -135.10 SS G_CDS: -6.82 Total: -141.92 kcal Atomic # 8 Polarization: -28.82 SS G_CDS: -0.16 Total: -28.99 kcal Atomic # 14 Polarization: 48.05 SS G_CDS: 2.03 Total: 50.08 kcal Total: -90.66 2.60 -88.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505850514.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.954 kcal (2) G-P(sol) polarization free energy of solvation -90.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.69 seconds