Wall clock time and date at job start Sat Apr 11 2020 07:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.36857 * 125.02351 * 2 1 4 4 H 0.96996 * 125.00858 * 0.04030 * 3 2 1 5 5 C 1.37399 * 109.98376 * 180.02562 * 3 2 1 6 6 C 1.39370 * 133.25028 * 180.34870 * 5 3 2 7 7 C 1.36315 * 120.23605 * 180.18381 * 6 5 3 8 8 C 1.40209 * 120.66732 * 359.45002 * 7 6 5 9 9 C 1.47654 * 119.97115 * 180.27894 * 8 7 6 10 10 O 1.21581 * 119.99739 * 314.66222 * 9 8 7 11 11 N 1.34772 * 120.00385 * 134.66732 * 9 8 7 12 12 C 1.46505 * 119.99697 * 6.24597 * 11 9 8 13 13 C 1.52997 * 109.47041 * 98.59995 * 12 11 9 14 14 O 1.42903 * 109.46963 * 67.64137 * 13 12 11 15 15 C 1.46501 * 120.00489 * 186.25117 * 11 9 8 16 16 C 1.52992 * 109.47267 * 89.99453 * 15 11 9 17 17 N 1.46498 * 109.47262 * 180.02562 * 16 15 11 18 18 C 1.36941 * 120.00343 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99803 * 359.97438 * 18 17 16 20 20 C 1.38810 * 119.99987 * 179.97438 * 18 17 16 21 21 N 1.31622 * 120.00090 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99841 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46901 * 60.00339 * 22 20 18 24 24 H 1.48496 * 109.47091 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47377 * 300.00491 * 22 20 18 26 26 C 1.39147 * 120.05464 * 0.25072 * 8 7 6 27 27 C 1.39270 * 119.39783 * 0.02968 * 26 8 7 28 28 C 1.34191 * 125.01894 * 180.02562 * 2 1 3 29 29 C 1.50711 * 126.53950 * 359.95462 * 28 2 1 30 30 H 1.09002 * 109.47255 * 269.98133 * 1 2 3 31 31 H 1.09005 * 109.46928 * 29.97056 * 1 2 3 32 32 H 1.08991 * 109.47653 * 149.97539 * 1 2 3 33 33 H 1.07999 * 119.87721 * 359.92646 * 6 5 3 34 34 H 1.08003 * 119.66399 * 179.72300 * 7 6 5 35 35 H 1.09003 * 109.47059 * 218.59771 * 12 11 9 36 36 H 1.08998 * 109.46862 * 338.59713 * 12 11 9 37 37 H 1.09000 * 109.47264 * 187.63578 * 13 12 11 38 38 H 1.08997 * 109.47693 * 307.63720 * 13 12 11 39 39 H 0.96699 * 114.00005 * 180.02562 * 14 13 12 40 40 H 1.08997 * 109.46963 * 209.99887 * 15 11 9 41 41 H 1.09004 * 109.46265 * 329.99441 * 15 11 9 42 42 H 1.09006 * 109.47245 * 300.00029 * 16 15 11 43 43 H 1.09004 * 109.47227 * 59.99999 * 16 15 11 44 44 H 0.97006 * 119.99962 * 0.02562 * 17 16 15 45 45 H 0.96995 * 119.99894 * 179.97438 * 21 20 18 46 46 H 1.08000 * 120.30081 * 180.02562 * 26 8 7 47 47 H 1.08997 * 109.46866 * 270.02482 * 29 28 2 48 48 H 1.08996 * 109.46740 * 30.02748 * 29 28 2 49 49 H 1.09003 * 109.46831 * 150.02127 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2924 1.1207 0.0000 4 1 1.9612 2.0324 0.0006 5 6 3.6194 0.7642 -0.0006 6 6 4.8050 1.4967 0.0054 7 6 6.0080 0.8557 -0.0009 8 6 6.0720 -0.5449 -0.0018 9 6 7.3834 -1.2234 -0.0023 10 8 8.2633 -0.8449 -0.7511 11 7 7.6050 -2.2624 0.8270 12 6 6.5066 -2.8063 1.6295 13 6 5.9395 -4.0496 0.9415 14 8 6.9122 -5.0960 0.9714 15 6 8.9443 -2.8477 0.9263 16 6 9.7332 -2.1329 2.0252 17 7 11.0727 -2.7179 2.1240 18 6 11.9638 -2.2365 3.0457 19 1 11.6792 -1.4253 3.6995 20 6 13.2328 -2.7912 3.1397 21 7 13.5797 -3.7795 2.3426 22 14 14.4485 -2.1341 4.3965 23 1 13.8850 -2.2943 5.7611 24 1 15.7223 -2.8907 4.2956 25 1 14.7045 -0.6954 4.1325 26 6 4.9006 -1.2960 -0.0015 27 6 3.6702 -0.6437 -0.0010 28 6 2.2771 -1.0990 -0.0005 29 6 1.8003 -2.5287 -0.0002 30 1 -0.3634 -0.0003 1.0277 31 1 -0.3633 0.8903 -0.5134 32 1 -0.3634 -0.8897 -0.5142 33 1 4.7705 2.5762 0.0107 34 1 6.9211 1.4325 -0.0008 35 1 6.8778 -3.0757 2.6183 36 1 5.7223 -2.0558 1.7278 37 1 5.0396 -4.3751 1.4634 38 1 5.6933 -3.8119 -0.0934 39 1 6.6202 -5.9166 0.5515 40 1 8.8608 -3.9070 1.1694 41 1 9.4623 -2.7333 -0.0260 42 1 9.8168 -1.0736 1.7820 43 1 9.2152 -2.2473 2.9774 44 1 11.3284 -3.4462 1.5366 45 1 14.4666 -4.1668 2.4080 46 1 4.9453 -2.3751 -0.0017 47 1 1.6856 -2.8732 1.0276 48 1 0.8410 -2.5918 -0.5138 49 1 2.5295 -3.1549 -0.5142 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569956097.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:34:30 Heat of formation + Delta-G solvation = -5.877803 kcal Electronic energy + Delta-G solvation = -30199.545581 eV Core-core repulsion = 26127.755399 eV Total energy + Delta-G solvation = -4071.790182 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.75889 -39.98647 -37.25840 -36.94843 -35.42855 -34.28858 -33.57204 -31.62372 -31.44740 -30.39953 -29.36232 -28.45683 -27.16753 -26.19164 -24.06548 -23.22678 -22.73512 -21.85628 -21.18399 -19.74230 -18.91544 -18.30039 -17.55104 -17.11462 -17.04034 -16.17369 -15.89132 -15.47814 -15.22752 -14.85515 -14.58069 -14.28526 -13.98600 -13.88250 -13.69669 -13.45132 -13.36184 -13.21831 -13.12794 -13.02356 -12.98562 -12.89745 -12.58671 -12.41444 -12.24403 -11.92386 -11.79186 -11.41192 -11.10898 -11.03922 -10.81814 -10.79676 -10.49089 -10.08765 -10.03713 -9.80780 -9.69819 -9.55322 -8.75397 -8.45221 -8.30207 -7.87692 -6.80563 -5.64948 -2.93427 0.78396 1.13273 2.29288 2.71774 2.89061 3.17481 3.52249 3.55634 3.57544 3.69690 4.11801 4.20599 4.40624 4.56538 4.66381 4.70977 4.73948 4.84727 4.90850 4.98460 5.01520 5.08225 5.16867 5.21108 5.30337 5.38937 5.42145 5.44485 5.46827 5.56331 5.66323 5.70202 5.77447 5.83357 5.94631 6.07509 6.13680 6.21053 6.28539 6.37909 6.39527 6.48426 6.71131 6.82229 6.91889 7.09142 7.17057 7.53164 7.68455 7.79886 8.40094 8.53929 9.64277 10.22457 10.57949 11.58030 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017980 B = 0.002339 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.903801 B =11968.390955 C =12841.805455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.071 3.929 3 N -0.590 5.590 4 H 0.414 0.586 5 C 0.115 3.885 6 C -0.134 4.134 7 C -0.047 4.047 8 C -0.146 4.146 9 C 0.557 3.443 10 O -0.529 6.529 11 N -0.593 5.593 12 C 0.095 3.905 13 C 0.055 3.945 14 O -0.559 6.559 15 C 0.109 3.891 16 C 0.143 3.857 17 N -0.729 5.729 18 C -0.235 4.235 19 H 0.069 0.931 20 C -0.016 4.016 21 N -0.934 5.934 22 Si 0.909 3.091 23 H -0.287 1.287 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.051 4.051 27 C -0.111 4.111 28 C -0.165 4.165 29 C -0.079 4.079 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.125 0.875 34 H 0.135 0.865 35 H 0.089 0.911 36 H 0.103 0.897 37 H 0.056 0.944 38 H 0.049 0.951 39 H 0.377 0.623 40 H 0.093 0.907 41 H 0.082 0.918 42 H 0.019 0.981 43 H 0.017 0.983 44 H 0.384 0.616 45 H 0.255 0.745 46 H 0.136 0.864 47 H 0.065 0.935 48 H 0.063 0.937 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.929 4.972 -5.731 34.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.036 4.036 3 N -0.194 5.194 4 H 0.251 0.749 5 C 0.006 3.994 6 C -0.155 4.155 7 C -0.067 4.067 8 C -0.151 4.151 9 C 0.345 3.655 10 O -0.405 6.405 11 N -0.325 5.325 12 C -0.028 4.028 13 C -0.024 4.024 14 O -0.364 6.364 15 C -0.013 4.013 16 C 0.015 3.985 17 N -0.373 5.373 18 C -0.366 4.366 19 H 0.087 0.913 20 C -0.212 4.212 21 N -0.582 5.582 22 Si 0.740 3.260 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.070 4.070 27 C -0.115 4.115 28 C -0.172 4.172 29 C -0.136 4.136 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.103 0.897 33 H 0.143 0.857 34 H 0.153 0.847 35 H 0.108 0.892 36 H 0.121 0.879 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.224 0.776 40 H 0.111 0.889 41 H 0.100 0.900 42 H 0.037 0.963 43 H 0.034 0.966 44 H 0.218 0.782 45 H 0.065 0.935 46 H 0.153 0.847 47 H 0.084 0.916 48 H 0.082 0.918 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -33.093 5.815 -5.685 34.078 hybrid contribution 0.280 0.279 0.263 0.475 sum -32.814 6.094 -5.421 33.812 Atomic orbital electron populations 1.20465 0.87716 1.03654 1.03143 1.20063 0.93252 0.85451 1.04824 1.41620 1.04009 1.08211 1.65512 0.74884 1.18329 0.84521 0.94096 1.02408 1.19671 0.89245 0.99297 1.07242 1.20543 0.97523 0.92691 0.95976 1.19686 0.92831 0.94304 1.08250 1.18309 0.87132 0.79832 0.80263 1.90816 1.45723 1.64524 1.39477 1.47719 1.10616 1.32434 1.41745 1.21952 0.90816 0.94254 0.95824 1.22814 0.91316 0.88886 0.99356 1.86620 1.42696 1.24526 1.82578 1.21778 0.80449 0.98197 1.00912 1.20903 0.86947 0.95793 0.94871 1.42194 1.09251 1.42162 1.43736 1.19171 0.93074 1.13500 1.10898 0.91329 1.24743 0.97664 0.98879 0.99865 1.69659 1.20348 1.27440 1.40800 0.86239 0.80697 0.78062 0.81028 1.21343 1.21706 1.21319 1.21079 0.89598 1.00024 0.96281 1.18930 0.92885 0.91905 1.07789 1.20025 0.90271 0.94860 1.12068 1.20139 1.00757 0.90889 1.01792 0.90434 0.91440 0.89658 0.85684 0.84691 0.89226 0.87945 0.92566 0.93333 0.77650 0.88867 0.89999 0.96325 0.96551 0.78212 0.93530 0.84692 0.91643 0.91836 0.91817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.33 10.18 36.01 0.37 0.04 16 2 C 0.07 0.50 7.08 -81.77 -0.58 -0.08 16 3 N -0.59 -4.29 6.05 -6.91 -0.04 -4.34 16 4 H 0.41 1.80 8.96 -40.82 -0.37 1.44 16 5 C 0.11 1.15 7.27 -83.95 -0.61 0.54 16 6 C -0.13 -1.36 10.00 -39.85 -0.40 -1.76 16 7 C -0.05 -0.59 9.60 -39.53 -0.38 -0.97 16 8 C -0.15 -2.01 5.12 -104.98 -0.54 -2.54 16 9 C 0.56 9.55 7.26 -12.42 -0.09 9.46 16 10 O -0.53 -11.27 16.54 5.29 0.09 -11.18 16 11 N -0.59 -9.56 2.48 -174.87 -0.43 -9.99 16 12 C 0.10 1.16 5.34 -4.04 -0.02 1.14 16 13 C 0.06 0.54 6.37 37.16 0.24 0.77 16 14 O -0.56 -6.48 11.86 -35.23 -0.42 -6.89 16 15 C 0.11 2.12 5.44 -4.04 -0.02 2.09 16 16 C 0.14 3.30 6.58 -4.05 -0.03 3.27 16 17 N -0.73 -20.20 5.60 -59.91 -0.34 -20.54 16 18 C -0.24 -7.04 9.99 -15.06 -0.15 -7.20 16 19 H 0.07 1.99 7.83 -52.48 -0.41 1.58 16 20 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 21 N -0.93 -29.56 13.06 55.49 0.72 -28.83 16 22 Si 0.91 23.45 29.55 -169.99 -5.02 18.43 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 26 C -0.05 -0.58 7.43 -38.86 -0.29 -0.87 16 27 C -0.11 -1.18 6.34 -105.16 -0.67 -1.85 16 28 C -0.17 -1.40 6.32 -102.69 -0.65 -2.05 16 29 C -0.08 -0.47 10.17 36.01 0.37 -0.10 16 30 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.08 0.23 7.04 -51.93 -0.37 -0.13 16 33 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 34 H 0.14 1.70 8.06 -52.48 -0.42 1.28 16 35 H 0.09 1.15 8.13 -51.93 -0.42 0.73 16 36 H 0.10 1.09 4.96 -51.93 -0.26 0.83 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.05 0.45 6.39 -51.93 -0.33 0.12 16 39 H 0.38 2.62 9.12 45.56 0.42 3.04 16 40 H 0.09 1.79 6.42 -51.93 -0.33 1.45 16 41 H 0.08 1.76 7.34 -51.93 -0.38 1.38 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.38 11.07 7.67 -40.82 -0.31 10.76 16 45 H 0.25 7.77 8.31 -40.82 -0.34 7.43 16 46 H 0.14 1.33 3.77 -52.49 -0.20 1.13 16 47 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.06 0.28 7.06 -51.93 -0.37 -0.09 16 49 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 398.55 15.07 6.01 6.01 Total: -1.00 -38.74 398.55 -9.25 -47.99 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -6.27 Total: 10.02 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: -3.55 Total: -0.68 kcal Atomic # 7 Polarization: -63.61 SS G_CDS: -0.09 Total: -63.70 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -0.33 Total: -18.07 kcal Atomic # 14 Polarization: 23.45 SS G_CDS: -5.02 Total: 18.43 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -38.74 -9.25 -47.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569956097.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.111 kcal (2) G-P(sol) polarization free energy of solvation -38.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds