Wall clock time and date at job start Sat Apr 11 2020 07:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30090 * 124.88010 * 2 1 4 4 C 1.35578 * 108.84215 * 179.97438 * 3 2 1 5 5 C 1.40288 * 106.61956 * 359.97438 * 4 3 2 6 6 C 1.38586 * 119.92311 * 180.02562 * 5 4 3 7 7 C 1.38206 * 120.22011 * 0.02602 * 6 5 4 8 8 C 1.38193 * 120.67134 * 359.97438 * 7 6 5 9 9 C 1.39361 * 120.23969 * 0.25109 * 8 7 6 10 10 C 1.47431 * 120.29666 * 179.74288 * 9 8 7 11 11 O 1.21602 * 120.00200 * 180.02562 * 10 9 8 12 12 N 1.34774 * 120.00074 * 0.02562 * 10 9 8 13 13 C 1.46502 * 120.00422 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47348 * 179.97438 * 13 12 10 15 15 C 1.53006 * 109.46780 * 180.02562 * 14 13 12 16 16 N 1.46497 * 109.46895 * 180.02562 * 15 14 13 17 17 C 1.36941 * 119.99728 * 269.99964 * 16 15 14 18 18 H 1.07996 * 119.99954 * 144.85916 * 17 16 15 19 19 C 1.38817 * 119.99843 * 324.85513 * 17 16 15 20 20 N 1.31620 * 119.99762 * 157.16256 * 19 17 16 21 21 Si 1.86801 * 120.00077 * 337.17315 * 19 17 16 22 22 H 1.48497 * 109.47477 * 95.35006 * 21 19 17 23 23 H 1.48502 * 109.46629 * 215.35151 * 21 19 17 24 24 H 1.48497 * 109.46784 * 335.35009 * 21 19 17 25 25 C 1.46497 * 120.00321 * 89.99826 * 16 15 14 26 26 C 1.52997 * 109.47064 * 121.90202 * 25 16 15 27 27 C 1.53002 * 109.47171 * 241.90036 * 25 16 15 28 28 O 1.34130 * 124.88140 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.46863 * 90.00456 * 1 2 3 30 30 H 1.08993 * 109.47159 * 210.00334 * 1 2 3 31 31 H 1.08999 * 109.47064 * 330.00214 * 1 2 3 32 32 H 1.08008 * 119.88928 * 180.02562 * 6 5 4 33 33 H 1.07997 * 119.66717 * 179.97438 * 7 6 5 34 34 H 1.07998 * 119.87664 * 179.97438 * 8 7 6 35 35 H 0.97001 * 120.00171 * 359.97438 * 12 10 9 36 36 H 1.09003 * 109.47065 * 300.00142 * 13 12 10 37 37 H 1.09005 * 109.46696 * 59.99608 * 13 12 10 38 38 H 1.08995 * 109.46912 * 299.99720 * 14 13 12 39 39 H 1.08991 * 109.46899 * 60.00304 * 14 13 12 40 40 H 1.09001 * 109.46834 * 299.99867 * 15 14 13 41 41 H 1.08999 * 109.47406 * 59.99797 * 15 14 13 42 42 H 0.96996 * 119.99554 * 179.97438 * 20 19 17 43 43 H 1.08997 * 109.47433 * 1.89794 * 25 16 15 44 44 H 1.08994 * 109.47407 * 65.33024 * 26 25 16 45 45 H 1.09003 * 109.47110 * 185.32812 * 26 25 16 46 46 H 1.09000 * 109.47450 * 305.32436 * 26 25 16 47 47 H 1.09001 * 109.47157 * 55.18442 * 27 25 16 48 48 H 1.09000 * 109.47449 * 175.18851 * 27 25 16 49 49 H 1.09005 * 109.47130 * 295.19219 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2510 1.0672 0.0000 4 6 3.5540 0.6926 0.0006 5 6 3.5682 -0.7102 0.0015 6 6 4.7763 -1.3893 0.0028 7 6 5.9679 -0.6891 0.0037 8 6 5.9735 0.6928 0.0028 9 6 4.7724 1.3996 0.0062 10 6 4.7769 2.8739 0.0110 11 8 3.7257 3.4851 0.0144 12 7 5.9461 3.5441 0.0115 13 6 5.9507 5.0091 0.0156 14 6 7.3948 5.5147 0.0160 15 6 7.3995 7.0447 0.0209 16 7 8.7821 7.5288 0.0207 17 6 9.4299 7.7512 1.2065 18 1 10.4879 7.5509 1.2897 19 6 8.7267 8.2341 2.3016 20 7 9.1859 8.0343 3.5188 21 14 7.1285 9.1673 2.0477 22 1 5.9826 8.2323 2.1813 23 1 7.0141 10.2397 3.0686 24 1 7.1185 9.7719 0.6914 25 6 9.4719 7.7749 -1.2481 26 6 9.9309 9.2333 -1.3045 27 6 10.6882 6.8529 -1.3546 28 8 2.2741 -1.1003 0.0005 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 4.7866 -2.4693 0.0032 33 1 6.9041 -1.2274 0.0052 34 1 6.9121 1.2270 0.0039 35 1 6.7847 3.0566 0.0091 36 1 5.4370 5.3766 -0.8727 37 1 5.4390 5.3715 0.9073 38 1 7.9081 5.1473 0.9045 39 1 7.9068 5.1523 -0.8754 40 1 6.8860 7.4124 -0.8674 41 1 6.8875 7.4068 0.9125 42 1 8.6947 8.3721 4.2839 43 1 8.7916 7.5759 -2.0761 44 1 10.6828 9.4076 -0.5349 45 1 10.3594 9.4417 -2.2849 46 1 9.0776 9.8897 -1.1341 47 1 10.3715 5.8176 -1.2288 48 1 11.1519 6.9747 -2.3336 49 1 11.4079 7.1097 -0.5773 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664561924.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:34:31 Heat of formation + Delta-G solvation = -1.089983 kcal Electronic energy + Delta-G solvation = -29624.371799 eV Core-core repulsion = 25552.789233 eV Total energy + Delta-G solvation = -4071.582567 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.39258 -40.98278 -38.90354 -38.60123 -36.52106 -35.90208 -34.32279 -33.70438 -32.59864 -32.17884 -30.67944 -29.14759 -27.76230 -27.16265 -25.39212 -24.61389 -23.82827 -22.89338 -22.71988 -21.49580 -21.15481 -19.24592 -18.82507 -18.37746 -18.01996 -17.71283 -17.33270 -16.84950 -16.55764 -16.31136 -16.23979 -15.47323 -15.21492 -14.95148 -14.82187 -14.77578 -14.67286 -14.15632 -14.06734 -14.00791 -13.68431 -13.55731 -13.41267 -13.29392 -13.11508 -13.00543 -12.88697 -12.65149 -12.58248 -12.34790 -12.33897 -12.16348 -11.99828 -11.70328 -11.67850 -11.39423 -11.19228 -10.98455 -10.54987 -10.26406 -9.95099 -9.55152 -8.74205 -8.14913 -5.47237 -0.77003 -0.01547 1.29517 1.30130 1.39602 1.40675 1.49078 1.70054 1.99943 2.44124 2.64331 2.77941 3.07796 3.33492 3.36286 3.70036 3.74774 3.97374 4.04102 4.04499 4.14848 4.23985 4.31320 4.38087 4.49998 4.55590 4.57992 4.58810 4.64297 4.71520 4.72624 4.75362 4.83368 4.90404 4.98116 5.09232 5.10261 5.11566 5.16897 5.21069 5.21988 5.25160 5.31069 5.42471 5.52625 5.59628 5.66978 6.01645 6.27030 6.45229 6.55298 7.06002 7.13764 7.72912 8.12984 9.05212 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015425 B = 0.002284 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.811780 B =12256.647855 C =12953.700057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.250 3.750 3 N -0.515 5.515 4 C 0.038 3.962 5 C -0.024 4.024 6 C -0.054 4.054 7 C -0.090 4.090 8 C -0.067 4.067 9 C -0.117 4.117 10 C 0.545 3.455 11 O -0.566 6.566 12 N -0.708 5.708 13 C 0.129 3.871 14 C -0.124 4.124 15 C 0.132 3.868 16 N -0.611 5.611 17 C -0.225 4.225 18 H 0.052 0.948 19 C -0.021 4.021 20 N -0.951 5.951 21 Si 0.927 3.073 22 H -0.285 1.285 23 H -0.318 1.318 24 H -0.258 1.258 25 C 0.156 3.844 26 C -0.148 4.148 27 C -0.144 4.144 28 O -0.215 6.215 29 H 0.120 0.880 30 H 0.122 0.878 31 H 0.106 0.894 32 H 0.177 0.823 33 H 0.197 0.803 34 H 0.170 0.830 35 H 0.414 0.586 36 H 0.069 0.931 37 H 0.039 0.961 38 H 0.055 0.945 39 H 0.088 0.912 40 H 0.066 0.934 41 H 0.026 0.974 42 H 0.258 0.742 43 H 0.079 0.921 44 H 0.035 0.965 45 H 0.073 0.927 46 H 0.032 0.968 47 H 0.049 0.951 48 H 0.071 0.929 49 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.474 -23.415 -12.539 28.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.040 3.960 3 N -0.245 5.245 4 C -0.075 4.075 5 C -0.074 4.074 6 C -0.072 4.072 7 C -0.108 4.108 8 C -0.086 4.086 9 C -0.121 4.121 10 C 0.333 3.667 11 O -0.445 6.445 12 N -0.361 5.361 13 C 0.004 3.996 14 C -0.164 4.164 15 C 0.007 3.993 16 N -0.334 5.334 17 C -0.355 4.355 18 H 0.069 0.931 19 C -0.217 4.217 20 N -0.596 5.596 21 Si 0.759 3.241 22 H -0.214 1.214 23 H -0.247 1.247 24 H -0.182 1.182 25 C 0.051 3.949 26 C -0.207 4.207 27 C -0.203 4.203 28 O -0.107 6.107 29 H 0.138 0.862 30 H 0.140 0.860 31 H 0.125 0.875 32 H 0.194 0.806 33 H 0.214 0.786 34 H 0.187 0.813 35 H 0.253 0.747 36 H 0.087 0.913 37 H 0.057 0.943 38 H 0.074 0.926 39 H 0.106 0.894 40 H 0.084 0.916 41 H 0.044 0.956 42 H 0.067 0.933 43 H 0.097 0.903 44 H 0.054 0.946 45 H 0.092 0.908 46 H 0.051 0.949 47 H 0.068 0.932 48 H 0.090 0.910 49 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -10.436 -22.281 -12.416 27.559 hybrid contribution -0.315 0.328 0.852 0.966 sum -10.751 -21.953 -11.564 27.041 Atomic orbital electron populations 1.20745 0.77250 1.07017 1.06897 1.27756 0.98443 0.77419 0.92389 1.70767 1.01923 1.30188 1.21615 1.19932 0.91761 0.92297 1.03517 1.20719 0.85251 0.93405 1.08016 1.20659 0.86082 1.02418 0.98049 1.21529 0.98895 0.92752 0.97618 1.21770 0.96180 0.95811 0.94880 1.19291 0.92187 0.91958 1.08688 1.18492 0.83797 0.87862 0.76534 1.90807 1.32799 1.70396 1.50536 1.45813 1.08430 1.07354 1.74532 1.21239 0.98168 0.79164 1.01020 1.22126 0.93535 0.97760 1.03007 1.21162 0.86173 0.92762 0.99235 1.44405 1.11279 1.75429 1.02266 1.18534 0.94276 1.35264 0.87450 0.93068 1.25874 1.00638 0.99995 0.95173 1.69975 1.42493 1.48812 0.98331 0.86127 0.81770 0.78886 0.77366 1.21357 1.24741 1.18242 1.20712 0.93898 0.93511 0.86800 1.22076 1.00234 0.97523 1.00842 1.22047 0.98167 0.99411 1.00637 1.84481 1.15103 1.36349 1.74762 0.86210 0.85987 0.87516 0.80596 0.78617 0.81309 0.74725 0.91310 0.94289 0.92570 0.89386 0.91605 0.95610 0.93324 0.90334 0.94582 0.90772 0.94918 0.93171 0.90984 0.95105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.67 10.51 71.24 0.75 0.08 16 2 C 0.25 5.71 8.24 88.37 0.73 6.44 16 3 N -0.51 -16.67 10.62 -295.54 -3.14 -19.81 16 4 C 0.04 1.15 6.84 39.71 0.27 1.42 16 5 C -0.02 -0.54 7.42 22.85 0.17 -0.37 16 6 C -0.05 -0.72 10.05 22.35 0.22 -0.49 16 7 C -0.09 -0.94 10.00 22.25 0.22 -0.72 16 8 C -0.07 -1.09 9.53 22.53 0.21 -0.88 16 9 C -0.12 -3.22 5.90 -19.94 -0.12 -3.34 16 10 C 0.55 18.46 7.76 86.67 0.67 19.13 16 11 O -0.57 -24.65 16.07 -4.04 -0.06 -24.71 16 12 N -0.71 -20.11 5.51 -466.36 -2.57 -22.67 16 13 C 0.13 4.23 5.67 86.38 0.49 4.72 16 14 C -0.12 -4.14 5.65 30.60 0.17 -3.97 16 15 C 0.13 5.30 4.49 86.38 0.39 5.69 16 16 N -0.61 -26.54 2.06 -678.04 -1.40 -27.94 16 17 C -0.23 -12.05 8.74 84.03 0.73 -11.31 16 18 H 0.05 3.03 7.17 -2.91 -0.02 3.01 16 19 C -0.02 -1.23 5.31 84.86 0.45 -0.78 16 20 N -0.95 -59.27 13.97 21.65 0.30 -58.96 16 21 Si 0.93 47.24 24.97 68.60 1.71 48.96 16 22 H -0.29 -14.36 6.66 99.48 0.66 -13.69 16 23 H -0.32 -16.74 7.11 99.48 0.71 -16.04 16 24 H -0.26 -12.46 7.11 99.48 0.71 -11.76 16 25 C 0.16 5.46 3.36 44.99 0.15 5.61 16 26 C -0.15 -5.16 9.04 71.98 0.65 -4.51 16 27 C -0.14 -4.53 9.11 71.98 0.66 -3.88 16 28 O -0.21 -4.73 10.77 -9.54 -0.10 -4.83 16 29 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.18 1.04 8.06 -2.91 -0.02 1.02 16 33 H 0.20 0.23 8.06 -2.91 -0.02 0.21 16 34 H 0.17 1.72 6.39 -2.91 -0.02 1.70 16 35 H 0.41 8.62 6.50 -92.71 -0.60 8.02 16 36 H 0.07 2.21 8.14 -2.39 -0.02 2.20 16 37 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 38 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 40 H 0.07 2.31 7.90 -2.39 -0.02 2.29 16 41 H 0.03 1.20 2.98 -2.39 -0.01 1.19 16 42 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 43 H 0.08 2.35 7.78 -2.39 -0.02 2.33 16 44 H 0.03 1.41 7.80 -2.39 -0.02 1.39 16 45 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 46 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 48 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 49 H 0.03 1.11 7.25 -2.38 -0.02 1.10 16 Total: -1.00 -86.26 400.24 1.89 -84.37 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: 0.32 Total: 12.76 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: 6.83 Total: 12.84 kcal Atomic # 7 Polarization: -122.58 SS G_CDS: -6.80 Total: -129.39 kcal Atomic # 8 Polarization: -29.38 SS G_CDS: -0.17 Total: -29.54 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 1.71 Total: 48.96 kcal Total: -86.26 1.89 -84.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664561924.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.276 kcal (2) G-P(sol) polarization free energy of solvation -86.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds