Wall clock time and date at job start Sat Apr 11 2020 07:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29869 * 124.83345 * 2 1 4 4 C 1.36125 * 108.76438 * 180.02562 * 3 2 1 5 5 C 1.39264 * 133.76110 * 180.27835 * 4 3 2 6 6 C 1.39196 * 119.46224 * 180.17002 * 5 4 3 7 7 C 1.47722 * 119.94936 * 179.79729 * 6 5 4 8 8 O 1.21563 * 120.00283 * 359.72007 * 7 6 5 9 9 N 1.34777 * 119.99629 * 179.72503 * 7 6 5 10 10 C 1.46507 * 119.99542 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.47280 * 324.99739 * 10 9 7 12 12 C 1.53002 * 109.46688 * 204.99971 * 10 9 7 13 13 N 1.46502 * 109.47184 * 55.00234 * 12 10 9 14 14 C 1.36936 * 119.99724 * 179.97438 * 13 12 10 15 15 H 1.08002 * 120.00414 * 359.97438 * 14 13 12 16 16 C 1.38811 * 120.00170 * 179.97438 * 14 13 12 17 17 N 1.31626 * 119.99525 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00314 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47199 * 90.00019 * 18 16 14 20 20 H 1.48503 * 109.47346 * 209.99765 * 18 16 14 21 21 H 1.48497 * 109.47134 * 329.99963 * 18 16 14 22 22 C 1.52992 * 109.47485 * 85.00034 * 10 9 7 23 23 C 1.52997 * 109.47482 * 179.97438 * 22 10 9 24 24 C 1.53006 * 109.47223 * 59.99555 * 22 10 9 25 25 C 1.52999 * 109.46961 * 300.00204 * 22 10 9 26 26 C 1.40050 * 120.09748 * 359.51869 * 6 5 4 27 27 C 1.36526 * 120.47385 * 0.25781 * 26 6 5 28 28 C 1.38899 * 120.18806 * 359.97420 * 27 26 6 29 29 O 1.34243 * 124.83138 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.47019 * 90.00035 * 1 2 3 31 31 H 1.09001 * 109.47125 * 210.00048 * 1 2 3 32 32 H 1.09006 * 109.47039 * 330.00155 * 1 2 3 33 33 H 1.07993 * 120.27168 * 359.96396 * 5 4 3 34 34 H 0.96997 * 120.00436 * 359.97438 * 9 7 6 35 35 H 1.09002 * 109.46816 * 175.00210 * 12 10 9 36 36 H 1.09000 * 109.47059 * 294.99866 * 12 10 9 37 37 H 0.96991 * 120.00214 * 359.97438 * 13 12 10 38 38 H 0.97006 * 119.99349 * 180.02562 * 17 16 14 39 39 H 1.09002 * 109.47153 * 59.99783 * 23 22 10 40 40 H 1.09001 * 109.46832 * 299.99974 * 23 22 10 41 41 H 1.09004 * 109.47261 * 179.97438 * 23 22 10 42 42 H 1.08993 * 109.46955 * 180.02562 * 24 22 10 43 43 H 1.09000 * 109.47050 * 300.00346 * 24 22 10 44 44 H 1.09001 * 109.47002 * 60.00080 * 24 22 10 45 45 H 1.09002 * 109.46716 * 299.99630 * 25 22 10 46 46 H 1.09000 * 109.47486 * 59.99547 * 25 22 10 47 47 H 1.09001 * 109.47362 * 180.02562 * 25 22 10 48 48 H 1.08001 * 119.76210 * 180.22903 * 26 6 5 49 49 H 1.07991 * 119.90386 * 180.02562 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2489 1.0660 0.0000 4 6 3.5569 0.6892 -0.0006 5 6 4.7609 1.3891 0.0040 6 6 5.9619 0.6854 -0.0018 7 6 7.2453 1.4169 -0.0015 8 8 7.2521 2.6325 -0.0013 9 7 8.4087 0.7365 -0.0016 10 6 9.6815 1.4621 -0.0019 11 1 9.5802 2.3733 -0.5915 12 6 10.7718 0.5787 -0.6116 13 7 10.3525 0.1342 -1.9431 14 6 11.1732 -0.6721 -2.6857 15 1 12.1297 -0.9801 -2.2901 16 6 10.7757 -1.0937 -3.9471 17 7 9.6097 -0.7187 -4.4292 18 14 11.8949 -2.1942 -4.9599 19 1 11.5921 -3.6170 -4.6613 20 1 11.6707 -1.9330 -6.4045 21 1 13.3115 -1.9074 -4.6190 22 6 10.0626 1.8240 1.4349 23 6 11.3921 2.5811 1.4346 24 6 10.2048 0.5450 2.2625 25 6 8.9722 2.7073 2.0446 26 6 5.9553 -0.7151 -0.0021 27 6 4.7754 -1.4019 -0.0020 28 6 3.5678 -0.7157 -0.0010 29 8 2.2738 -1.1019 -0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 4.7628 2.4690 0.0088 34 1 8.4033 -0.2334 -0.0015 35 1 11.6975 1.1485 -0.6935 36 1 10.9350 -0.2897 0.0266 37 1 9.4936 0.4111 -2.2987 38 1 9.3318 -1.0137 -5.3105 39 1 11.2912 3.4923 0.8450 40 1 12.1687 1.9514 1.0004 41 1 11.6634 2.8394 2.4583 42 1 10.4758 0.8029 3.2862 43 1 9.2578 0.0053 2.2627 44 1 10.9815 -0.0843 1.8281 45 1 8.8709 3.6185 1.4550 46 1 8.0252 2.1676 2.0448 47 1 9.2439 2.9656 3.0681 48 1 6.8903 -1.2556 -0.0030 49 1 4.7811 -2.4818 -0.0018 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677257911.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:34:45 Heat of formation + Delta-G solvation = 8.588034 kcal Electronic energy + Delta-G solvation = -30681.836383 eV Core-core repulsion = 26610.673486 eV Total energy + Delta-G solvation = -4071.162896 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.44784 -40.28943 -38.26735 -36.94521 -35.08888 -34.44587 -33.34321 -31.89474 -31.08899 -30.86258 -28.54684 -27.63196 -27.12665 -26.61112 -24.42166 -23.54564 -22.54706 -21.77914 -21.52343 -20.80243 -18.65818 -18.32318 -17.69295 -17.12832 -17.06797 -16.33299 -15.90076 -15.51243 -14.97486 -14.60160 -14.31321 -14.00946 -13.96739 -13.88109 -13.70161 -13.59086 -13.45671 -13.23206 -13.09570 -12.92791 -12.72313 -12.41168 -12.17498 -11.91654 -11.79935 -11.72025 -11.46233 -11.36647 -11.21422 -11.09232 -10.83223 -10.74044 -10.66165 -10.51287 -10.23528 -9.94696 -9.75990 -9.69581 -8.96160 -8.91351 -8.66679 -8.57757 -6.96782 -5.79602 -3.09481 0.54473 0.68615 2.18081 2.23845 2.91923 3.26336 3.40529 3.46294 3.48088 3.66065 3.77782 4.30279 4.54307 4.65476 4.75186 4.83596 4.89816 4.94941 4.96130 5.04432 5.11850 5.15033 5.21525 5.29498 5.52215 5.56757 5.64373 5.72587 5.79129 5.86538 5.90488 5.92165 5.99266 6.03594 6.07259 6.08179 6.10182 6.13409 6.17558 6.31268 6.35077 6.46286 6.46874 6.50032 6.64707 6.72924 6.94681 7.38780 7.66235 7.81162 8.37968 8.47550 9.49906 10.06011 10.41223 11.42411 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008912 B = 0.003342 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3141.176064 B = 8376.870663 C =10780.407124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.241 3.759 3 N -0.473 5.473 4 C 0.011 3.989 5 C 0.003 3.997 6 C -0.127 4.127 7 C 0.563 3.437 8 O -0.535 6.535 9 N -0.700 5.700 10 C 0.149 3.851 11 H 0.089 0.911 12 C 0.141 3.859 13 N -0.732 5.732 14 C -0.242 4.242 15 H 0.070 0.930 16 C -0.011 4.011 17 N -0.929 5.929 18 Si 0.906 3.094 19 H -0.290 1.290 20 H -0.292 1.292 21 H -0.282 1.282 22 C -0.076 4.076 23 C -0.141 4.141 24 C -0.142 4.142 25 C -0.130 4.130 26 C -0.056 4.056 27 C -0.096 4.096 28 C 0.027 3.973 29 O -0.214 6.214 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.105 0.895 33 H 0.150 0.850 34 H 0.402 0.598 35 H 0.036 0.964 36 H 0.029 0.971 37 H 0.386 0.614 38 H 0.255 0.745 39 H 0.056 0.944 40 H 0.062 0.938 41 H 0.052 0.948 42 H 0.049 0.951 43 H 0.052 0.948 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.052 0.948 47 H 0.041 0.959 48 H 0.147 0.853 49 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.137 0.173 14.716 19.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.029 3.971 3 N -0.203 5.203 4 C -0.100 4.100 5 C -0.017 4.017 6 C -0.131 4.131 7 C 0.349 3.651 8 O -0.413 6.413 9 N -0.351 5.351 10 C 0.045 3.955 11 H 0.107 0.893 12 C 0.013 3.987 13 N -0.377 5.377 14 C -0.373 4.373 15 H 0.088 0.912 16 C -0.208 4.208 17 N -0.578 5.578 18 Si 0.737 3.263 19 H -0.218 1.218 20 H -0.218 1.218 21 H -0.208 1.208 22 C -0.078 4.078 23 C -0.198 4.198 24 C -0.199 4.199 25 C -0.188 4.188 26 C -0.075 4.075 27 C -0.115 4.115 28 C -0.024 4.024 29 O -0.105 6.105 30 H 0.117 0.883 31 H 0.111 0.889 32 H 0.123 0.877 33 H 0.168 0.832 34 H 0.238 0.762 35 H 0.054 0.946 36 H 0.047 0.953 37 H 0.220 0.780 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.071 0.929 47 H 0.060 0.940 48 H 0.165 0.835 49 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -13.175 1.558 14.645 19.761 hybrid contribution 0.525 -1.796 -0.909 2.081 sum -12.649 -0.238 13.736 18.674 Atomic orbital electron populations 1.20413 0.80805 1.05529 1.05249 1.26477 0.96659 0.78232 0.95694 1.70632 1.00820 1.28910 1.19942 1.19689 0.92036 0.91208 1.07034 1.20372 0.87269 1.01036 0.93040 1.19865 0.93722 0.93526 1.06016 1.17841 0.83426 0.87149 0.76637 1.90769 1.87432 1.13106 1.50032 1.45825 1.05176 1.10529 1.73548 1.21323 0.82662 0.96558 0.94999 0.89322 1.21107 0.94325 0.95228 0.88001 1.42369 1.21906 1.59601 1.13777 1.19191 0.99163 1.21924 0.97044 0.91183 1.24745 0.97204 1.01142 0.97671 1.69675 1.20379 1.49248 1.18458 0.86211 0.79925 0.80406 0.79733 1.21757 1.21813 1.20789 1.20898 0.95976 0.95849 0.95044 1.21886 0.96275 1.00291 1.01389 1.21922 1.01864 0.97080 0.99066 1.21896 0.97744 0.99941 0.99192 1.20958 0.97938 0.93009 0.95582 1.19519 0.86937 1.00686 1.04316 1.20510 0.83792 0.94497 1.03596 1.84465 1.15365 1.36298 1.74409 0.88295 0.88892 0.87653 0.83248 0.76152 0.94606 0.95341 0.78023 0.93501 0.92531 0.91882 0.92889 0.93168 0.92906 0.91866 0.91923 0.92924 0.93975 0.83505 0.84042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.33 10.51 36.01 0.38 0.04 16 2 C 0.24 2.67 8.23 -13.11 -0.11 2.57 16 3 N -0.47 -6.63 11.34 -8.72 -0.10 -6.73 16 4 C 0.01 0.17 7.23 -84.73 -0.61 -0.44 16 5 C 0.00 0.04 9.64 -38.84 -0.37 -0.34 16 6 C -0.13 -1.86 5.87 -104.99 -0.62 -2.48 16 7 C 0.56 9.20 6.12 -12.38 -0.08 9.12 16 8 O -0.54 -10.00 13.45 5.31 0.07 -9.93 16 9 N -0.70 -10.85 3.59 -54.79 -0.20 -11.05 16 10 C 0.15 2.42 1.69 -67.93 -0.11 2.31 16 11 H 0.09 1.67 7.58 -51.93 -0.39 1.27 16 12 C 0.14 2.63 5.10 -4.04 -0.02 2.61 16 13 N -0.73 -17.55 5.43 -59.90 -0.33 -17.87 16 14 C -0.24 -6.50 9.99 -15.06 -0.15 -6.65 16 15 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 16 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 17 N -0.93 -27.57 13.06 55.49 0.72 -26.84 16 18 Si 0.91 21.96 29.55 -169.99 -5.02 16.94 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 22 C -0.08 -1.02 0.62 -154.51 -0.10 -1.12 16 23 C -0.14 -1.75 8.12 37.16 0.30 -1.45 16 24 C -0.14 -1.71 7.97 37.16 0.30 -1.41 16 25 C -0.13 -1.81 7.00 37.16 0.26 -1.55 16 26 C -0.06 -0.71 9.47 -39.52 -0.37 -1.08 16 27 C -0.10 -1.15 9.99 -39.95 -0.40 -1.55 16 28 C 0.03 0.37 7.43 -38.49 -0.29 0.08 16 29 O -0.21 -2.66 10.77 3.81 0.04 -2.62 16 30 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.15 2.25 7.64 -52.49 -0.40 1.85 16 34 H 0.40 5.83 6.61 -40.82 -0.27 5.56 16 35 H 0.04 0.68 6.71 -51.93 -0.35 0.33 16 36 H 0.03 0.51 6.17 -51.93 -0.32 0.19 16 37 H 0.39 9.97 7.33 -40.82 -0.30 9.67 16 38 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.79 6.54 -51.93 -0.34 0.45 16 41 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.05 0.62 7.60 -51.93 -0.39 0.23 16 44 H 0.06 0.78 6.32 -51.93 -0.33 0.45 16 45 H 0.06 0.96 7.53 -51.93 -0.39 0.57 16 46 H 0.05 0.78 5.77 -51.93 -0.30 0.48 16 47 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.15 1.61 6.37 -52.49 -0.33 1.27 16 49 H 0.14 1.34 8.06 -52.49 -0.42 0.91 16 LS Contribution 392.35 15.07 5.91 5.91 Total: -1.00 -33.32 392.35 -8.03 -41.35 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: -7.05 Total: 12.60 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -2.09 Total: -1.76 kcal Atomic # 7 Polarization: -62.60 SS G_CDS: 0.10 Total: -62.50 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: 0.11 Total: -12.55 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.32 -8.03 -41.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677257911.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.941 kcal (2) G-P(sol) polarization free energy of solvation -33.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds