Wall clock time and date at job start Sat Apr 11 2020 07:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29869 * 124.83345 * 2 1 4 4 C 1.36125 * 108.76438 * 180.02562 * 3 2 1 5 5 C 1.39264 * 133.76110 * 180.27835 * 4 3 2 6 6 C 1.39196 * 119.46224 * 180.17002 * 5 4 3 7 7 C 1.47722 * 119.94936 * 179.79729 * 6 5 4 8 8 O 1.21563 * 120.00283 * 359.72007 * 7 6 5 9 9 N 1.34777 * 119.99629 * 179.72503 * 7 6 5 10 10 C 1.46507 * 119.99542 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.47280 * 324.99739 * 10 9 7 12 12 C 1.53002 * 109.46688 * 204.99971 * 10 9 7 13 13 N 1.46502 * 109.47184 * 55.00234 * 12 10 9 14 14 C 1.36936 * 119.99724 * 179.97438 * 13 12 10 15 15 H 1.08002 * 120.00414 * 359.97438 * 14 13 12 16 16 C 1.38811 * 120.00170 * 179.97438 * 14 13 12 17 17 N 1.31626 * 119.99525 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00314 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47199 * 90.00019 * 18 16 14 20 20 H 1.48503 * 109.47346 * 209.99765 * 18 16 14 21 21 H 1.48497 * 109.47134 * 329.99963 * 18 16 14 22 22 C 1.52992 * 109.47485 * 85.00034 * 10 9 7 23 23 C 1.52997 * 109.47482 * 179.97438 * 22 10 9 24 24 C 1.53006 * 109.47223 * 59.99555 * 22 10 9 25 25 C 1.52999 * 109.46961 * 300.00204 * 22 10 9 26 26 C 1.40050 * 120.09748 * 359.51869 * 6 5 4 27 27 C 1.36526 * 120.47385 * 0.25781 * 26 6 5 28 28 C 1.38899 * 120.18806 * 359.97420 * 27 26 6 29 29 O 1.34243 * 124.83138 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.47019 * 90.00035 * 1 2 3 31 31 H 1.09001 * 109.47125 * 210.00048 * 1 2 3 32 32 H 1.09006 * 109.47039 * 330.00155 * 1 2 3 33 33 H 1.07993 * 120.27168 * 359.96396 * 5 4 3 34 34 H 0.96997 * 120.00436 * 359.97438 * 9 7 6 35 35 H 1.09002 * 109.46816 * 175.00210 * 12 10 9 36 36 H 1.09000 * 109.47059 * 294.99866 * 12 10 9 37 37 H 0.96991 * 120.00214 * 359.97438 * 13 12 10 38 38 H 0.97006 * 119.99349 * 180.02562 * 17 16 14 39 39 H 1.09002 * 109.47153 * 59.99783 * 23 22 10 40 40 H 1.09001 * 109.46832 * 299.99974 * 23 22 10 41 41 H 1.09004 * 109.47261 * 179.97438 * 23 22 10 42 42 H 1.08993 * 109.46955 * 180.02562 * 24 22 10 43 43 H 1.09000 * 109.47050 * 300.00346 * 24 22 10 44 44 H 1.09001 * 109.47002 * 60.00080 * 24 22 10 45 45 H 1.09002 * 109.46716 * 299.99630 * 25 22 10 46 46 H 1.09000 * 109.47486 * 59.99547 * 25 22 10 47 47 H 1.09001 * 109.47362 * 180.02562 * 25 22 10 48 48 H 1.08001 * 119.76210 * 180.22903 * 26 6 5 49 49 H 1.07991 * 119.90386 * 180.02562 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2489 1.0660 0.0000 4 6 3.5569 0.6892 -0.0006 5 6 4.7609 1.3891 0.0040 6 6 5.9619 0.6854 -0.0018 7 6 7.2453 1.4169 -0.0015 8 8 7.2521 2.6325 -0.0013 9 7 8.4087 0.7365 -0.0016 10 6 9.6815 1.4621 -0.0019 11 1 9.5802 2.3733 -0.5915 12 6 10.7718 0.5787 -0.6116 13 7 10.3525 0.1342 -1.9431 14 6 11.1732 -0.6721 -2.6857 15 1 12.1297 -0.9801 -2.2901 16 6 10.7757 -1.0937 -3.9471 17 7 9.6097 -0.7187 -4.4292 18 14 11.8949 -2.1942 -4.9599 19 1 11.5921 -3.6170 -4.6613 20 1 11.6707 -1.9330 -6.4045 21 1 13.3115 -1.9074 -4.6190 22 6 10.0626 1.8240 1.4349 23 6 11.3921 2.5811 1.4346 24 6 10.2048 0.5450 2.2625 25 6 8.9722 2.7073 2.0446 26 6 5.9553 -0.7151 -0.0021 27 6 4.7754 -1.4019 -0.0020 28 6 3.5678 -0.7157 -0.0010 29 8 2.2738 -1.1019 -0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 4.7628 2.4690 0.0088 34 1 8.4033 -0.2334 -0.0015 35 1 11.6975 1.1485 -0.6935 36 1 10.9350 -0.2897 0.0266 37 1 9.4936 0.4111 -2.2987 38 1 9.3318 -1.0137 -5.3105 39 1 11.2912 3.4923 0.8450 40 1 12.1687 1.9514 1.0004 41 1 11.6634 2.8394 2.4583 42 1 10.4758 0.8029 3.2862 43 1 9.2578 0.0053 2.2627 44 1 10.9815 -0.0843 1.8281 45 1 8.8709 3.6185 1.4550 46 1 8.0252 2.1676 2.0448 47 1 9.2439 2.9656 3.0681 48 1 6.8903 -1.2556 -0.0030 49 1 4.7811 -2.4818 -0.0018 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677257911.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:34:44 Heat of formation + Delta-G solvation = -14.584861 kcal Electronic energy + Delta-G solvation = -30682.841235 eV Core-core repulsion = 26610.673486 eV Total energy + Delta-G solvation = -4072.167749 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.41839 -41.56486 -39.40281 -38.18716 -36.17647 -36.05845 -34.71996 -33.08944 -32.51987 -31.97891 -29.68825 -28.93008 -28.12404 -27.76188 -25.90797 -25.03778 -23.56764 -23.03612 -22.71705 -22.01549 -19.88933 -19.63049 -18.91769 -18.67633 -18.02555 -17.52865 -17.11664 -16.91234 -16.48489 -15.93096 -15.47575 -15.33590 -15.31096 -14.91230 -14.81465 -14.78717 -14.65167 -14.22680 -14.15870 -14.07324 -13.65544 -13.49570 -13.42245 -13.04638 -13.00095 -12.92291 -12.73937 -12.72547 -12.51066 -12.40124 -12.31429 -12.17826 -12.00867 -11.74090 -11.66597 -11.61955 -11.28083 -11.06330 -10.87043 -10.10672 -9.83592 -9.66946 -8.96286 -7.91197 -5.20322 -0.46281 -0.40434 1.23363 1.33907 1.49802 1.51010 1.59151 1.72635 2.06291 2.57976 2.62191 2.77494 3.28149 3.43091 3.57406 3.67695 3.81395 3.85365 3.88357 3.97665 4.05678 4.15756 4.27278 4.36456 4.46526 4.57138 4.61021 4.61761 4.66597 4.78593 4.84438 4.86285 4.88305 4.91892 4.98714 5.01354 5.03464 5.09141 5.11181 5.18482 5.20953 5.26564 5.32347 5.35295 5.44786 5.53687 5.57570 5.64958 6.29042 6.43137 6.53360 7.18827 7.36752 8.10736 8.34227 9.31546 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008912 B = 0.003342 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3141.176064 B = 8376.870663 C =10780.407124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.255 3.745 3 N -0.513 5.513 4 C -0.006 4.006 5 C -0.015 4.015 6 C -0.134 4.134 7 C 0.562 3.438 8 O -0.566 6.566 9 N -0.694 5.694 10 C 0.158 3.842 11 H 0.057 0.943 12 C 0.144 3.856 13 N -0.743 5.743 14 C -0.238 4.238 15 H 0.080 0.920 16 C -0.073 4.073 17 N -0.967 5.967 18 Si 0.970 3.030 19 H -0.285 1.285 20 H -0.302 1.302 21 H -0.271 1.271 22 C -0.070 4.070 23 C -0.139 4.139 24 C -0.138 4.138 25 C -0.123 4.123 26 C -0.058 4.058 27 C -0.084 4.084 28 C 0.015 3.985 29 O -0.214 6.214 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.117 0.883 33 H 0.136 0.864 34 H 0.409 0.591 35 H 0.039 0.961 36 H 0.049 0.951 37 H 0.373 0.627 38 H 0.248 0.752 39 H 0.046 0.954 40 H 0.062 0.938 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.053 0.947 44 H 0.063 0.937 45 H 0.040 0.960 46 H 0.040 0.960 47 H 0.063 0.937 48 H 0.165 0.835 49 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.162 -1.848 16.229 20.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.044 3.956 3 N -0.243 5.243 4 C -0.116 4.116 5 C -0.035 4.035 6 C -0.139 4.139 7 C 0.350 3.650 8 O -0.447 6.447 9 N -0.344 5.344 10 C 0.053 3.947 11 H 0.075 0.925 12 C 0.018 3.982 13 N -0.386 5.386 14 C -0.370 4.370 15 H 0.098 0.902 16 C -0.265 4.265 17 N -0.618 5.618 18 Si 0.800 3.200 19 H -0.212 1.212 20 H -0.230 1.230 21 H -0.196 1.196 22 C -0.071 4.071 23 C -0.197 4.197 24 C -0.195 4.195 25 C -0.180 4.180 26 C -0.077 4.077 27 C -0.103 4.103 28 C -0.036 4.036 29 O -0.106 6.106 30 H 0.137 0.863 31 H 0.138 0.862 32 H 0.136 0.864 33 H 0.154 0.846 34 H 0.246 0.754 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.205 0.795 38 H 0.057 0.943 39 H 0.065 0.935 40 H 0.081 0.919 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.072 0.928 44 H 0.082 0.918 45 H 0.059 0.941 46 H 0.059 0.941 47 H 0.082 0.918 48 H 0.182 0.818 49 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -13.164 -0.470 16.207 20.885 hybrid contribution 0.440 -1.121 -1.323 1.789 sum -12.724 -1.591 14.884 19.646 Atomic orbital electron populations 1.20811 0.76698 1.07431 1.06992 1.27703 0.98392 0.77186 0.92310 1.70650 1.00761 1.30413 1.22485 1.19846 0.92360 0.92113 1.07299 1.20298 0.88003 1.00562 0.94653 1.19777 0.92581 0.94509 1.07001 1.18105 0.84113 0.86881 0.75950 1.90749 1.87881 1.14492 1.51537 1.45737 1.04786 1.10740 1.73142 1.21164 0.82374 0.94730 0.96466 0.92508 1.21242 0.94956 0.96077 0.85934 1.42550 1.21164 1.59357 1.15514 1.19602 0.99415 1.20891 0.97110 0.90245 1.25507 0.98639 1.03266 0.99124 1.69841 1.22305 1.51187 1.18495 0.85192 0.78696 0.78752 0.77401 1.21185 1.22954 1.19552 1.20853 0.96310 0.96895 0.93071 1.21885 0.95459 0.99701 1.02660 1.21893 1.02023 0.95894 0.99737 1.21796 0.97371 0.98844 0.99988 1.21125 0.99109 0.91987 0.95479 1.19859 0.85948 1.02144 1.02303 1.20769 0.84790 0.94118 1.03904 1.84493 1.14890 1.36766 1.74461 0.86340 0.86220 0.86415 0.84635 0.75417 0.94366 0.93376 0.79487 0.94288 0.93488 0.91872 0.90673 0.91238 0.92754 0.91816 0.94117 0.94140 0.91850 0.81765 0.80874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.50 10.51 71.24 0.75 0.25 16 2 C 0.26 5.36 8.23 88.40 0.73 6.08 16 3 N -0.51 -14.54 11.34 -296.35 -3.36 -17.90 16 4 C -0.01 -0.18 7.23 39.27 0.28 0.11 16 5 C -0.02 -0.49 9.64 22.75 0.22 -0.27 16 6 C -0.13 -4.10 5.87 -20.10 -0.12 -4.21 16 7 C 0.56 19.19 6.12 86.75 0.53 19.72 16 8 O -0.57 -22.54 13.45 -3.91 -0.05 -22.60 16 9 N -0.69 -21.80 3.59 -445.52 -1.60 -23.40 16 10 C 0.16 5.16 1.69 44.99 0.08 5.24 16 11 H 0.06 2.24 7.58 -2.39 -0.02 2.22 16 12 C 0.14 5.27 5.10 86.38 0.44 5.71 16 13 N -0.74 -35.66 5.43 -343.44 -1.87 -37.52 16 14 C -0.24 -12.65 9.99 84.03 0.84 -11.81 16 15 H 0.08 4.00 7.83 -2.91 -0.02 3.97 16 16 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 17 N -0.97 -58.28 13.06 21.65 0.28 -58.00 16 18 Si 0.97 45.05 29.55 68.60 2.03 47.07 16 19 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 20 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 21 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 22 C -0.07 -1.81 0.62 -52.18 -0.03 -1.84 16 23 C -0.14 -3.27 8.12 71.98 0.58 -2.69 16 24 C -0.14 -2.99 7.97 71.98 0.57 -2.42 16 25 C -0.12 -3.37 7.00 71.98 0.50 -2.87 16 26 C -0.06 -1.45 9.47 22.31 0.21 -1.24 16 27 C -0.08 -1.92 9.99 22.03 0.22 -1.70 16 28 C 0.02 0.41 7.43 22.98 0.17 0.58 16 29 O -0.21 -5.03 10.77 -9.28 -0.10 -5.13 16 30 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.12 0.71 8.14 -2.38 -0.02 0.70 16 33 H 0.14 4.54 7.64 -2.91 -0.02 4.52 16 34 H 0.41 11.70 6.61 -92.71 -0.61 11.09 16 35 H 0.04 1.41 6.71 -2.39 -0.02 1.40 16 36 H 0.05 1.62 6.17 -2.39 -0.01 1.61 16 37 H 0.37 19.70 7.33 -92.72 -0.68 19.02 16 38 H 0.25 14.67 8.31 -92.70 -0.77 13.90 16 39 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.06 1.48 6.54 -2.39 -0.02 1.46 16 41 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 42 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.05 1.16 7.60 -2.39 -0.02 1.14 16 44 H 0.06 1.38 6.32 -2.39 -0.02 1.37 16 45 H 0.04 1.28 7.53 -2.39 -0.02 1.27 16 46 H 0.04 1.20 5.77 -2.39 -0.01 1.19 16 47 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 48 H 0.16 3.40 6.37 -2.91 -0.02 3.38 16 49 H 0.17 2.78 8.06 -2.92 -0.02 2.76 16 Total: -1.00 -73.85 392.35 1.48 -72.37 By element: Atomic # 1 Polarization: 40.36 SS G_CDS: -0.29 Total: 40.07 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: 6.45 Total: 5.04 kcal Atomic # 7 Polarization: -130.28 SS G_CDS: -6.54 Total: -136.83 kcal Atomic # 8 Polarization: -27.57 SS G_CDS: -0.15 Total: -27.72 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.07 kcal Total: -73.85 1.48 -72.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677257911.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.780 kcal (2) G-P(sol) polarization free energy of solvation -73.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds