Wall clock time and date at job start Sat Apr 11 2020 07:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47197 * 141.21872 * 3 2 1 5 5 C 1.34775 * 120.00040 * 89.99437 * 4 3 2 6 6 O 1.21278 * 119.99773 * 179.97438 * 5 4 3 7 7 C 1.50696 * 120.00002 * 0.28152 * 5 4 3 8 8 C 1.50706 * 109.47089 * 179.72038 * 7 5 4 9 9 C 1.41374 * 128.00459 * 89.99798 * 8 7 5 10 10 C 1.50707 * 126.80580 * 359.94623 * 9 8 7 11 11 N 1.30179 * 106.39587 * 179.97438 * 9 8 7 12 12 O 1.20923 * 111.60362 * 359.97438 * 11 9 8 13 13 C 1.34044 * 111.56567 * 359.76860 * 12 11 9 14 14 C 1.50699 * 126.77692 * 180.28581 * 13 12 11 15 15 C 1.46499 * 119.99715 * 269.99875 * 4 3 2 16 16 C 1.53047 * 109.46012 * 60.02726 * 15 4 3 17 17 C 1.53195 * 109.31025 * 178.59899 * 16 15 4 18 18 N 1.46927 * 108.76642 * 54.65701 * 17 16 15 19 19 C 1.36935 * 120.63203 * 126.40260 * 18 17 16 20 20 H 1.08000 * 119.99863 * 331.82040 * 19 18 17 21 21 C 1.38819 * 119.99866 * 151.82312 * 19 18 17 22 22 N 1.31617 * 119.99901 * 343.08202 * 21 19 18 23 23 Si 1.86793 * 119.99696 * 163.07881 * 21 19 18 24 24 H 1.48504 * 109.47303 * 60.00062 * 23 21 19 25 25 H 1.48506 * 109.46870 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47472 * 299.99966 * 23 21 19 27 27 C 1.46934 * 118.73673 * 306.38205 * 18 17 16 28 28 C 1.53034 * 109.46203 * 299.96980 * 15 4 3 29 29 H 4.40645 * 5.51482 * 180.02562 * 4 1 2 30 30 H 1.09001 * 109.47476 * 21.21585 * 3 2 1 31 31 H 1.09005 * 109.46878 * 261.21354 * 3 2 1 32 32 H 1.09003 * 109.47264 * 299.72086 * 7 5 4 33 33 H 1.09004 * 109.47391 * 59.72128 * 7 5 4 34 34 H 1.08994 * 109.47176 * 89.99861 * 10 9 8 35 35 H 1.08996 * 109.46761 * 210.00043 * 10 9 8 36 36 H 1.08998 * 109.46520 * 329.99730 * 10 9 8 37 37 H 1.08994 * 109.46998 * 270.10913 * 14 13 12 38 38 H 1.08999 * 109.47260 * 30.10759 * 14 13 12 39 39 H 1.09006 * 109.47243 * 150.10546 * 14 13 12 40 40 H 1.09002 * 109.46020 * 179.97438 * 15 4 3 41 41 H 1.08997 * 109.49516 * 298.56085 * 16 15 4 42 42 H 1.08997 * 109.49355 * 58.66234 * 16 15 4 43 43 H 1.08997 * 109.60168 * 294.86606 * 17 16 15 44 44 H 1.08995 * 109.69859 * 174.50160 * 17 16 15 45 45 H 0.96993 * 119.99683 * 180.02562 * 22 21 19 46 46 H 1.09002 * 109.58201 * 293.82161 * 27 18 17 47 47 H 1.08996 * 109.70256 * 173.46649 * 27 18 17 48 48 H 1.08997 * 109.50288 * 301.34223 * 28 15 4 49 49 H 1.09008 * 109.50025 * 61.43506 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 1.0776 -0.8651 5 6 3.3579 2.3041 -0.3532 6 8 3.7622 3.1954 -1.0694 7 6 3.1125 2.5660 1.1104 8 6 3.4435 4.0020 1.4261 9 6 2.5843 5.1237 1.3800 10 6 1.1265 5.1293 0.9980 11 7 3.3020 6.1510 1.7324 12 8 4.4420 5.8335 1.9812 13 6 4.6313 4.5156 1.8259 14 6 5.9135 3.7558 2.0494 15 6 3.3782 0.8213 -2.2867 16 6 2.0767 0.3717 -2.9548 17 6 2.3280 0.1384 -4.4478 18 7 3.4413 -0.8087 -4.5975 19 6 3.2973 -1.9406 -5.3545 20 1 2.3236 -2.3935 -5.4689 21 6 4.4031 -2.5061 -5.9746 22 7 5.5059 -1.8031 -6.1224 23 14 4.3258 -4.2648 -6.5993 24 1 3.2465 -4.3833 -7.6124 25 1 5.6267 -4.6286 -7.2162 26 1 4.0429 -5.1809 -5.4654 27 6 4.7121 -0.5178 -3.9198 28 6 4.4340 -0.2767 -2.4327 29 1 -1.0502 -0.0001 0.0003 30 1 3.0098 -0.9572 -0.3719 31 1 3.0092 0.1578 1.0157 32 1 2.0649 2.3750 1.3431 33 1 3.7433 1.9079 1.7080 34 1 0.5170 4.9734 1.8880 35 1 0.8727 6.0888 0.5474 36 1 0.9355 4.3298 0.2821 37 1 6.4854 3.7277 1.1221 38 1 6.4997 4.2520 2.8229 39 1 5.6826 2.7383 2.3651 40 1 3.7346 1.7341 -2.7642 41 1 1.7327 -0.5545 -2.4945 42 1 1.3180 1.1443 -2.8300 43 1 2.5848 1.0829 -4.9274 44 1 1.4320 -0.2748 -4.9110 45 1 6.2784 -2.1981 -6.5560 46 1 5.1633 0.3733 -4.3563 47 1 5.3905 -1.3634 -4.0324 48 1 5.3534 0.0341 -1.9365 49 1 4.0676 -1.1968 -1.9774 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716811563.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:34:56 Heat of formation + Delta-G solvation = 82.149931 kcal Electronic energy + Delta-G solvation = -31058.156430 eV Core-core repulsion = 26990.183417 eV Total energy + Delta-G solvation = -4067.973013 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -45.90675 -41.34961 -39.10099 -37.02171 -36.29476 -34.74124 -34.49451 -33.45186 -32.07949 -31.53582 -30.52788 -29.61335 -28.15951 -28.11919 -26.76041 -24.13310 -23.88084 -22.81465 -21.26533 -20.80639 -20.64247 -19.10479 -18.72556 -18.53084 -18.16015 -17.82633 -17.20711 -16.69342 -16.53722 -15.64849 -15.41200 -15.37389 -15.03847 -14.86603 -14.71201 -14.58710 -14.32156 -14.29213 -14.17995 -14.06844 -13.89605 -13.76521 -13.47298 -13.24931 -13.08922 -12.99969 -12.95735 -12.66175 -12.55924 -12.16633 -12.05765 -11.93571 -11.92689 -11.52676 -11.37935 -11.29839 -11.13772 -10.93407 -10.69001 -10.55796 -10.07111 -9.79625 -8.71253 -7.87492 -5.33816 0.49273 1.13052 1.48984 1.50031 1.51139 1.58038 1.65949 1.99725 2.20955 2.44620 2.52147 3.20457 3.28371 3.50375 3.56096 3.62090 3.67112 3.76218 3.92033 4.00298 4.09769 4.24628 4.33390 4.35176 4.40221 4.46236 4.54450 4.59983 4.60405 4.63184 4.68781 4.75949 4.77417 4.82069 4.84568 4.91078 5.02729 5.03746 5.11996 5.13617 5.18470 5.26650 5.29110 5.46010 5.55408 5.63982 5.70913 6.38046 6.38847 6.78108 7.14073 7.14740 7.30435 7.83608 8.36836 9.19378 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017400 B = 0.002701 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.784783 B =10363.924519 C =11008.006323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.232 4.232 3 C 0.208 3.792 4 N -0.597 5.597 5 C 0.515 3.485 6 O -0.579 6.579 7 C -0.051 4.051 8 C -0.200 4.200 9 C 0.021 3.979 10 C -0.074 4.074 11 N -0.403 5.403 12 O 0.078 5.922 13 C -0.016 4.016 14 C -0.076 4.076 15 C 0.156 3.844 16 C -0.114 4.114 17 C 0.144 3.856 18 N -0.607 5.607 19 C -0.264 4.264 20 H 0.068 0.932 21 C -0.049 4.049 22 N -0.936 5.936 23 Si 0.969 3.031 24 H -0.278 1.278 25 H -0.296 1.296 26 H -0.274 1.274 27 C 0.181 3.819 28 C -0.127 4.127 29 H 0.239 0.761 30 H 0.108 0.892 31 H 0.140 0.860 32 H 0.126 0.874 33 H 0.146 0.854 34 H 0.104 0.896 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.103 0.897 39 H 0.117 0.883 40 H 0.064 0.936 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.003 0.997 44 H 0.059 0.941 45 H 0.250 0.750 46 H -0.013 1.013 47 H 0.062 0.938 48 H 0.067 0.933 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.434 5.098 23.041 24.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.234 4.234 3 C 0.087 3.913 4 N -0.327 5.327 5 C 0.305 3.695 6 O -0.458 6.458 7 C -0.090 4.090 8 C -0.205 4.205 9 C -0.138 4.138 10 C -0.132 4.132 11 N -0.113 5.113 12 O 0.017 5.983 13 C -0.080 4.080 14 C -0.133 4.133 15 C 0.053 3.947 16 C -0.154 4.154 17 C 0.017 3.983 18 N -0.331 5.331 19 C -0.394 4.394 20 H 0.086 0.914 21 C -0.244 4.244 22 N -0.582 5.582 23 Si 0.797 3.203 24 H -0.203 1.203 25 H -0.222 1.222 26 H -0.199 1.199 27 C 0.055 3.945 28 C -0.167 4.167 29 H 0.256 0.744 30 H 0.126 0.874 31 H 0.158 0.842 32 H 0.144 0.856 33 H 0.163 0.837 34 H 0.122 0.878 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.121 0.879 39 H 0.135 0.865 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.079 0.921 43 H 0.021 0.979 44 H 0.077 0.923 45 H 0.060 0.940 46 H 0.005 0.995 47 H 0.080 0.920 48 H 0.086 0.914 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.283 6.834 22.724 24.547 hybrid contribution -0.016 -1.185 -1.405 1.839 sum -6.300 5.649 21.319 22.936 Atomic orbital electron populations 1.25641 0.96764 0.98240 0.99101 1.23743 0.95383 1.02383 1.01845 1.18757 0.83864 0.91855 0.96811 1.48155 1.64730 1.10518 1.09317 1.21149 0.76138 0.81197 0.91009 1.90719 1.47312 1.44929 1.62878 1.20026 1.06514 0.90974 0.91494 1.20518 0.93277 0.97277 1.09396 1.23898 1.00332 0.88970 1.00575 1.20238 0.86162 1.03760 1.03006 1.73787 0.91758 1.24809 1.20902 1.84729 1.23532 1.24446 1.65553 1.24925 0.99489 0.83588 0.99968 1.20591 0.88902 0.99435 1.04378 1.20768 0.95490 0.98012 0.80423 1.22086 0.96212 1.00843 0.96227 1.20984 0.91297 0.91722 0.94262 1.44323 1.10275 1.22703 1.55776 1.19479 0.94996 1.01389 1.23557 0.91397 1.25827 0.97197 1.02543 0.98872 1.70187 1.04536 1.36602 1.46862 0.85325 0.76401 0.80387 0.78215 1.20346 1.22194 1.19935 1.20531 0.87901 0.97649 0.88468 1.22297 0.98067 0.98166 0.98157 0.74444 0.87427 0.84225 0.85593 0.83667 0.87753 0.90890 0.90219 0.89658 0.87863 0.86501 0.91775 0.91204 0.92128 0.97906 0.92285 0.94048 0.99472 0.91983 0.91443 0.90981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.91 19.25 74.32 1.43 -1.48 16 2 C -0.23 -4.22 11.94 31.13 0.37 -3.85 16 3 C 0.21 3.48 5.16 84.57 0.44 3.92 16 4 N -0.60 -14.56 2.37 -808.15 -1.91 -16.48 16 5 C 0.52 13.16 7.66 87.66 0.67 13.84 16 6 O -0.58 -21.04 15.36 -3.02 -0.05 -21.09 16 7 C -0.05 -0.81 4.58 29.10 0.13 -0.68 16 8 C -0.20 -4.35 4.81 -19.73 -0.10 -4.45 16 9 C 0.02 0.53 7.33 43.58 0.32 0.85 16 10 C -0.07 -1.40 10.39 71.24 0.74 -0.66 16 11 N -0.40 -11.52 12.07 -49.54 -0.60 -12.12 16 12 O 0.08 2.05 11.20 71.60 0.80 2.85 16 13 C -0.02 -0.34 7.49 25.04 0.19 -0.15 16 14 C -0.08 -0.91 10.30 71.24 0.73 -0.18 16 15 C 0.16 5.19 2.48 45.02 0.11 5.30 16 16 C -0.11 -3.84 4.73 30.68 0.15 -3.69 16 17 C 0.14 6.08 6.52 86.36 0.56 6.65 16 18 N -0.61 -30.30 2.99 -699.08 -2.09 -32.40 16 19 C -0.26 -14.31 9.58 84.04 0.81 -13.50 16 20 H 0.07 3.56 7.88 -2.91 -0.02 3.54 16 21 C -0.05 -2.69 4.92 84.86 0.42 -2.28 16 22 N -0.94 -55.10 11.19 21.65 0.24 -54.86 16 23 Si 0.97 43.95 29.59 68.60 2.03 45.98 16 24 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 25 H -0.30 -13.56 7.11 99.48 0.71 -12.85 16 26 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 27 C 0.18 8.65 5.30 86.36 0.46 9.11 16 28 C -0.13 -4.49 5.31 30.67 0.16 -4.33 16 29 H 0.24 2.32 7.80 -4.41 -0.03 2.28 16 30 H 0.11 1.89 6.46 -2.39 -0.02 1.88 16 31 H 0.14 1.13 6.43 -2.38 -0.02 1.11 16 32 H 0.13 1.56 7.98 -2.39 -0.02 1.54 16 33 H 0.15 1.15 6.69 -2.38 -0.02 1.13 16 34 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.12 0.74 7.44 -2.38 -0.02 0.73 16 40 H 0.06 2.59 6.90 -2.39 -0.02 2.57 16 41 H 0.07 2.28 7.02 -2.39 -0.02 2.26 16 42 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 44 H 0.06 2.42 7.93 -2.39 -0.02 2.40 16 45 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 46 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 47 H 0.06 3.31 6.07 -2.39 -0.01 3.30 16 48 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 49 H 0.07 2.37 6.72 -2.38 -0.02 2.35 16 Total: -1.00 -77.89 400.77 6.97 -70.93 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: 0.95 Total: 12.79 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: 7.59 Total: 4.40 kcal Atomic # 7 Polarization: -111.49 SS G_CDS: -4.36 Total: -115.85 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: 0.76 Total: -18.24 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -77.89 6.97 -70.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716811563.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.076 kcal (2) G-P(sol) polarization free energy of solvation -77.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds