Wall clock time and date at job start Sat Apr 11 2020 07:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30015 * 124.84350 * 2 1 4 4 C 1.35850 * 108.85739 * 179.97438 * 3 2 1 5 5 C 1.39839 * 133.62429 * 180.28003 * 4 3 2 6 6 C 1.36286 * 120.03610 * 180.23884 * 5 4 3 7 7 C 1.40094 * 120.41716 * 359.45131 * 6 5 4 8 8 C 1.47618 * 119.92949 * 180.30302 * 7 6 5 9 9 O 1.21581 * 120.00315 * 179.97438 * 8 7 6 10 10 N 1.34777 * 120.00081 * 359.97438 * 8 7 6 11 11 C 1.46503 * 120.00041 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.46772 * 179.97438 * 11 10 8 13 13 C 1.53005 * 109.46692 * 179.97438 * 12 11 10 14 14 H 1.08997 * 109.47476 * 305.00245 * 13 12 11 15 15 N 1.46496 * 109.47048 * 65.00254 * 13 12 11 16 16 C 1.36941 * 119.99899 * 205.00121 * 15 13 12 17 17 H 1.07993 * 120.00148 * 359.97438 * 16 15 13 18 18 C 1.38809 * 120.00011 * 180.02562 * 16 15 13 19 19 N 1.31622 * 120.00201 * 179.97438 * 18 16 15 20 20 Si 1.86807 * 120.00129 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.47010 * 90.00326 * 20 18 16 22 22 H 1.48493 * 109.47245 * 210.00250 * 20 18 16 23 23 H 1.48502 * 109.47221 * 330.00596 * 20 18 16 24 24 C 1.53001 * 109.46779 * 184.99934 * 13 12 11 25 25 C 1.53000 * 109.47238 * 60.00186 * 24 13 12 26 26 C 1.53005 * 109.46779 * 180.02562 * 24 13 12 27 27 C 1.39436 * 120.14403 * 0.28039 * 7 6 5 28 28 C 1.38285 * 119.62021 * 359.97438 * 27 7 6 29 29 O 1.34146 * 124.83820 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.46714 * 89.97629 * 1 2 3 31 31 H 1.09003 * 109.47321 * 209.97504 * 1 2 3 32 32 H 1.08996 * 109.46643 * 329.97968 * 1 2 3 33 33 H 1.08000 * 119.98128 * 359.97438 * 5 4 3 34 34 H 1.08002 * 119.79487 * 179.73475 * 6 5 4 35 35 H 0.97003 * 119.99825 * 0.02562 * 10 8 7 36 36 H 1.09007 * 109.46954 * 299.99910 * 11 10 8 37 37 H 1.08998 * 109.47300 * 59.99991 * 11 10 8 38 38 H 1.08994 * 109.47470 * 299.99494 * 12 11 10 39 39 H 1.08998 * 109.47206 * 59.99945 * 12 11 10 40 40 H 0.97000 * 120.00240 * 24.99829 * 15 13 12 41 41 H 0.96999 * 120.00249 * 179.97438 * 19 18 16 42 42 H 1.08999 * 109.47184 * 299.99623 * 24 13 12 43 43 H 1.09004 * 109.47115 * 59.99864 * 25 24 13 44 44 H 1.08998 * 109.46979 * 179.97438 * 25 24 13 45 45 H 1.08997 * 109.47207 * 299.99666 * 25 24 13 46 46 H 1.08997 * 109.47068 * 60.00616 * 26 24 13 47 47 H 1.09000 * 109.46575 * 179.97438 * 26 24 13 48 48 H 1.08991 * 109.47093 * 300.00083 * 26 24 13 49 49 H 1.07996 * 120.19012 * 179.97438 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2499 1.0671 0.0000 4 6 3.5558 0.6929 0.0006 5 6 4.7621 1.4003 0.0058 6 6 5.9474 0.7277 -0.0001 7 6 5.9680 -0.6731 0.0002 8 6 7.2581 -1.3907 0.0006 9 8 7.2775 -2.6063 0.0013 10 7 8.4144 -0.6982 0.0001 11 6 9.6947 -1.4104 -0.0001 12 6 10.8415 -0.3976 -0.0013 13 6 12.1786 -1.1414 -0.0009 14 1 12.2098 -1.8324 0.8415 15 7 12.3213 -1.8900 -1.2520 16 6 13.1265 -2.9967 -1.2997 17 1 13.6565 -3.3174 -0.4151 18 6 13.2622 -3.7058 -2.4853 19 7 14.0364 -4.7692 -2.5312 20 14 12.3459 -3.1508 -4.0156 21 1 13.1899 -2.1970 -4.7793 22 1 12.0399 -4.3302 -4.8644 23 1 11.0795 -2.4838 -3.6198 24 6 13.3228 -0.1334 0.1237 25 6 13.1738 0.6485 1.4303 26 6 14.6599 -0.8771 0.1235 27 6 4.7727 -1.3910 0.0006 28 6 3.5678 -0.7123 0.0013 29 8 2.2734 -1.1010 0.0005 30 1 -0.3633 0.0004 -1.0277 31 1 -0.3634 -0.8902 0.5134 32 1 -0.3632 0.8898 0.5141 33 1 4.7544 2.4803 0.0102 34 1 6.8767 1.2780 -0.0004 35 1 8.3989 0.2717 -0.0001 36 1 9.7626 -2.0359 0.8901 37 1 9.7622 -2.0363 -0.8899 38 1 10.7734 0.2274 -0.8916 39 1 10.7742 0.2286 0.8883 40 1 11.8455 -1.6019 -2.0466 41 1 14.1310 -5.2649 -3.3596 42 1 13.2917 0.5575 -0.7188 43 1 13.2049 -0.0424 2.2728 44 1 13.9892 1.3663 1.5192 45 1 12.2212 1.1784 1.4300 46 1 14.7659 -1.4338 -0.8077 47 1 15.4751 -0.1589 0.2117 48 1 14.6914 -1.5683 0.9656 49 1 4.7877 -2.4708 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717719650.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:35:11 Heat of formation + Delta-G solvation = 5.502505 kcal Electronic energy + Delta-G solvation = -29281.976098 eV Core-core repulsion = 25210.679403 eV Total energy + Delta-G solvation = -4071.296695 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.70831 -40.13679 -38.03662 -37.48959 -35.27864 -34.93033 -33.07976 -32.32496 -31.33465 -31.17229 -30.11927 -28.62937 -26.41151 -25.54065 -23.92539 -23.39750 -22.46006 -22.08619 -21.19187 -20.84826 -19.46327 -18.62544 -17.98153 -17.41502 -17.31104 -16.86881 -15.91514 -15.61436 -15.02568 -14.96654 -14.58232 -14.27139 -14.07963 -14.02793 -13.95191 -13.76099 -13.67888 -13.57211 -13.23101 -12.97592 -12.81795 -12.56010 -12.30585 -12.00527 -11.90080 -11.65676 -11.59444 -11.38610 -11.04315 -10.94232 -10.85753 -10.76460 -10.47322 -10.26928 -10.14699 -10.04111 -9.86072 -9.42211 -9.33867 -9.08925 -8.85839 -8.79763 -7.24251 -5.74329 -3.09184 -0.02153 0.74222 1.76218 1.95633 2.69510 3.08657 3.28618 3.39410 3.41905 3.44537 3.48314 4.02785 4.39559 4.47491 4.49190 4.61418 4.62691 4.76936 4.87259 4.90798 5.06575 5.10414 5.12800 5.37097 5.45886 5.46406 5.50444 5.57668 5.61769 5.69166 5.76286 5.77750 5.81733 5.88124 6.00291 6.07030 6.10620 6.21812 6.25906 6.36525 6.42099 6.50201 6.59873 6.64253 6.76778 7.04333 7.12576 7.36663 7.42666 8.02087 8.12722 8.44270 9.22627 9.95176 10.14191 11.43692 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015029 B = 0.002167 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.650852 B =12919.364071 C =14141.530107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.255 3.745 3 N -0.484 5.484 4 C 0.044 3.956 5 C -0.068 4.068 6 C -0.087 4.087 7 C -0.106 4.106 8 C 0.555 3.445 9 O -0.527 6.527 10 N -0.721 5.721 11 C 0.120 3.880 12 C -0.140 4.140 13 C 0.190 3.810 14 H 0.059 0.941 15 N -0.746 5.746 16 C -0.236 4.236 17 H 0.094 0.906 18 C 0.004 3.996 19 N -0.933 5.933 20 Si 0.880 3.120 21 H -0.286 1.286 22 H -0.293 1.293 23 H -0.278 1.278 24 C -0.110 4.110 25 C -0.147 4.147 26 C -0.141 4.141 27 C -0.026 4.026 28 C -0.002 4.002 29 O -0.209 6.209 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.107 0.893 33 H 0.143 0.857 34 H 0.142 0.858 35 H 0.397 0.603 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.360 0.640 41 H 0.259 0.741 42 H 0.058 0.942 43 H 0.050 0.950 44 H 0.044 0.956 45 H 0.049 0.951 46 H 0.088 0.912 47 H 0.029 0.971 48 H 0.043 0.957 49 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.424 15.951 7.724 29.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.044 3.956 3 N -0.215 5.215 4 C -0.069 4.069 5 C -0.087 4.087 6 C -0.107 4.107 7 C -0.110 4.110 8 C 0.341 3.659 9 O -0.404 6.404 10 N -0.372 5.372 11 C -0.002 4.002 12 C -0.179 4.179 13 C 0.080 3.920 14 H 0.077 0.923 15 N -0.389 5.389 16 C -0.366 4.366 17 H 0.111 0.889 18 C -0.191 4.191 19 N -0.581 5.581 20 Si 0.711 3.289 21 H -0.213 1.213 22 H -0.219 1.219 23 H -0.204 1.204 24 C -0.132 4.132 25 C -0.205 4.205 26 C -0.198 4.198 27 C -0.046 4.046 28 C -0.052 4.052 29 O -0.100 6.100 30 H 0.119 0.881 31 H 0.114 0.886 32 H 0.125 0.875 33 H 0.161 0.839 34 H 0.160 0.840 35 H 0.232 0.768 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.193 0.807 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.069 0.931 44 H 0.063 0.937 45 H 0.067 0.933 46 H 0.107 0.893 47 H 0.048 0.952 48 H 0.062 0.938 49 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -23.442 15.436 7.775 29.125 hybrid contribution -0.332 0.144 -1.253 1.304 sum -23.774 15.580 6.522 29.163 Atomic orbital electron populations 1.20474 0.80586 1.05818 1.05433 1.26623 0.96799 0.78239 0.93918 1.70639 1.00873 1.28902 1.21068 1.20040 0.92315 0.91222 1.03288 1.19943 0.88249 1.00580 0.99923 1.20911 0.98389 0.92810 0.98615 1.19765 0.93015 0.93501 1.04712 1.17917 0.83457 0.87156 0.77341 1.90846 1.87381 1.13142 1.49009 1.46010 1.06188 1.10216 1.74794 1.21530 0.79834 0.95024 1.03833 1.22194 0.95405 0.98145 1.02137 1.20168 0.89575 0.91696 0.90549 0.92347 1.42823 1.56456 1.31944 1.07653 1.19042 1.19083 1.00832 0.97611 0.88854 1.24658 0.99644 0.97427 0.97416 1.69690 1.41953 1.19706 1.26719 0.86614 0.79905 0.77709 0.84647 1.21313 1.21922 1.20386 1.21741 0.97831 0.97454 0.96139 1.21933 1.00427 0.99687 0.98419 1.21835 0.94548 0.99195 1.04222 1.19914 0.86143 1.01343 0.97186 1.20065 0.83805 0.94353 1.06984 1.84507 1.15213 1.36111 1.74171 0.88066 0.88624 0.87467 0.83946 0.84042 0.76833 0.91078 0.89974 0.91680 0.90928 0.80727 0.93137 0.92316 0.93078 0.93671 0.93250 0.89283 0.95202 0.93817 0.83103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.22 10.51 36.01 0.38 0.16 16 2 C 0.25 2.24 8.23 -13.05 -0.11 2.14 16 3 N -0.48 -5.27 11.33 -8.63 -0.10 -5.37 16 4 C 0.04 0.49 7.24 -84.62 -0.61 -0.12 16 5 C -0.07 -0.61 10.03 -39.69 -0.40 -1.01 16 6 C -0.09 -0.75 9.46 -39.59 -0.37 -1.12 16 7 C -0.11 -1.22 5.88 -104.93 -0.62 -1.83 16 8 C 0.56 7.83 7.76 -12.43 -0.10 7.74 16 9 O -0.53 -9.73 16.32 5.29 0.09 -9.64 16 10 N -0.72 -8.70 5.50 -61.32 -0.34 -9.03 16 11 C 0.12 1.79 5.56 -4.04 -0.02 1.77 16 12 C -0.14 -1.87 4.65 -26.73 -0.12 -1.99 16 13 C 0.19 3.28 2.02 -67.93 -0.14 3.14 16 14 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 15 N -0.75 -16.26 4.26 -53.43 -0.23 -16.49 16 16 C -0.24 -6.25 8.05 -15.06 -0.12 -6.38 16 17 H 0.09 2.67 7.62 -52.49 -0.40 2.26 16 18 C 0.00 0.12 5.50 -17.43 -0.10 0.03 16 19 N -0.93 -28.88 13.97 55.49 0.78 -28.10 16 20 Si 0.88 22.01 27.74 -169.99 -4.71 17.29 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 23 H -0.28 -6.56 6.52 56.52 0.37 -6.20 16 24 C -0.11 -1.75 2.69 -90.62 -0.24 -1.99 16 25 C -0.15 -1.85 8.85 37.16 0.33 -1.52 16 26 C -0.14 -2.55 8.26 37.16 0.31 -2.24 16 27 C -0.03 -0.31 9.60 -39.12 -0.38 -0.69 16 28 C 0.00 -0.02 7.42 -38.70 -0.29 -0.31 16 29 O -0.21 -2.25 10.77 3.72 0.04 -2.21 16 30 H 0.10 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.10 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.11 0.24 8.14 -51.93 -0.42 -0.19 16 33 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 34 H 0.14 0.77 6.37 -52.49 -0.33 0.43 16 35 H 0.40 3.33 6.47 -40.82 -0.26 3.07 16 36 H 0.07 1.13 8.14 -51.92 -0.42 0.71 16 37 H 0.08 1.52 7.75 -51.93 -0.40 1.12 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 0.78 6.17 -51.93 -0.32 0.46 16 40 H 0.36 7.87 5.66 -40.82 -0.23 7.64 16 41 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 42 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.05 0.53 6.32 -51.93 -0.33 0.20 16 46 H 0.09 1.95 6.01 -51.93 -0.31 1.64 16 47 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 49 H 0.15 1.82 7.63 -52.49 -0.40 1.42 16 LS Contribution 398.22 15.07 6.00 6.00 Total: -1.00 -35.03 398.22 -8.31 -43.33 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -7.23 Total: 8.45 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: -2.60 Total: -4.24 kcal Atomic # 7 Polarization: -59.10 SS G_CDS: 0.11 Total: -58.99 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: 0.13 Total: -11.85 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.71 Total: 17.29 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.03 -8.31 -43.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717719650.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.836 kcal (2) G-P(sol) polarization free energy of solvation -35.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds