Wall clock time and date at job start Sat Apr 11 2020 07:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30015 * 124.84350 * 2 1 4 4 C 1.35850 * 108.85739 * 179.97438 * 3 2 1 5 5 C 1.39839 * 133.62429 * 180.28003 * 4 3 2 6 6 C 1.36286 * 120.03610 * 180.23884 * 5 4 3 7 7 C 1.40094 * 120.41716 * 359.45131 * 6 5 4 8 8 C 1.47618 * 119.92949 * 180.30302 * 7 6 5 9 9 O 1.21581 * 120.00315 * 179.97438 * 8 7 6 10 10 N 1.34777 * 120.00081 * 359.97438 * 8 7 6 11 11 C 1.46503 * 120.00041 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.46772 * 179.97438 * 11 10 8 13 13 C 1.53005 * 109.46692 * 179.97438 * 12 11 10 14 14 H 1.08997 * 109.47476 * 305.00245 * 13 12 11 15 15 N 1.46496 * 109.47048 * 65.00254 * 13 12 11 16 16 C 1.36941 * 119.99899 * 205.00121 * 15 13 12 17 17 H 1.07993 * 120.00148 * 359.97438 * 16 15 13 18 18 C 1.38809 * 120.00011 * 180.02562 * 16 15 13 19 19 N 1.31622 * 120.00201 * 179.97438 * 18 16 15 20 20 Si 1.86807 * 120.00129 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.47010 * 90.00326 * 20 18 16 22 22 H 1.48493 * 109.47245 * 210.00250 * 20 18 16 23 23 H 1.48502 * 109.47221 * 330.00596 * 20 18 16 24 24 C 1.53001 * 109.46779 * 184.99934 * 13 12 11 25 25 C 1.53000 * 109.47238 * 60.00186 * 24 13 12 26 26 C 1.53005 * 109.46779 * 180.02562 * 24 13 12 27 27 C 1.39436 * 120.14403 * 0.28039 * 7 6 5 28 28 C 1.38285 * 119.62021 * 359.97438 * 27 7 6 29 29 O 1.34146 * 124.83820 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.46714 * 89.97629 * 1 2 3 31 31 H 1.09003 * 109.47321 * 209.97504 * 1 2 3 32 32 H 1.08996 * 109.46643 * 329.97968 * 1 2 3 33 33 H 1.08000 * 119.98128 * 359.97438 * 5 4 3 34 34 H 1.08002 * 119.79487 * 179.73475 * 6 5 4 35 35 H 0.97003 * 119.99825 * 0.02562 * 10 8 7 36 36 H 1.09007 * 109.46954 * 299.99910 * 11 10 8 37 37 H 1.08998 * 109.47300 * 59.99991 * 11 10 8 38 38 H 1.08994 * 109.47470 * 299.99494 * 12 11 10 39 39 H 1.08998 * 109.47206 * 59.99945 * 12 11 10 40 40 H 0.97000 * 120.00240 * 24.99829 * 15 13 12 41 41 H 0.96999 * 120.00249 * 179.97438 * 19 18 16 42 42 H 1.08999 * 109.47184 * 299.99623 * 24 13 12 43 43 H 1.09004 * 109.47115 * 59.99864 * 25 24 13 44 44 H 1.08998 * 109.46979 * 179.97438 * 25 24 13 45 45 H 1.08997 * 109.47207 * 299.99666 * 25 24 13 46 46 H 1.08997 * 109.47068 * 60.00616 * 26 24 13 47 47 H 1.09000 * 109.46575 * 179.97438 * 26 24 13 48 48 H 1.08991 * 109.47093 * 300.00083 * 26 24 13 49 49 H 1.07996 * 120.19012 * 179.97438 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2499 1.0671 0.0000 4 6 3.5558 0.6929 0.0006 5 6 4.7621 1.4003 0.0058 6 6 5.9474 0.7277 -0.0001 7 6 5.9680 -0.6731 0.0002 8 6 7.2581 -1.3907 0.0006 9 8 7.2775 -2.6063 0.0013 10 7 8.4144 -0.6982 0.0001 11 6 9.6947 -1.4104 -0.0001 12 6 10.8415 -0.3976 -0.0013 13 6 12.1786 -1.1414 -0.0009 14 1 12.2098 -1.8324 0.8415 15 7 12.3213 -1.8900 -1.2520 16 6 13.1265 -2.9967 -1.2997 17 1 13.6565 -3.3174 -0.4151 18 6 13.2622 -3.7058 -2.4853 19 7 14.0364 -4.7692 -2.5312 20 14 12.3459 -3.1508 -4.0156 21 1 13.1899 -2.1970 -4.7793 22 1 12.0399 -4.3302 -4.8644 23 1 11.0795 -2.4838 -3.6198 24 6 13.3228 -0.1334 0.1237 25 6 13.1738 0.6485 1.4303 26 6 14.6599 -0.8771 0.1235 27 6 4.7727 -1.3910 0.0006 28 6 3.5678 -0.7123 0.0013 29 8 2.2734 -1.1010 0.0005 30 1 -0.3633 0.0004 -1.0277 31 1 -0.3634 -0.8902 0.5134 32 1 -0.3632 0.8898 0.5141 33 1 4.7544 2.4803 0.0102 34 1 6.8767 1.2780 -0.0004 35 1 8.3989 0.2717 -0.0001 36 1 9.7626 -2.0359 0.8901 37 1 9.7622 -2.0363 -0.8899 38 1 10.7734 0.2274 -0.8916 39 1 10.7742 0.2286 0.8883 40 1 11.8455 -1.6019 -2.0466 41 1 14.1310 -5.2649 -3.3596 42 1 13.2917 0.5575 -0.7188 43 1 13.2049 -0.0424 2.2728 44 1 13.9892 1.3663 1.5192 45 1 12.2212 1.1784 1.4300 46 1 14.7659 -1.4338 -0.8077 47 1 15.4751 -0.1589 0.2117 48 1 14.6914 -1.5683 0.9656 49 1 4.7877 -2.4708 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717719650.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:35:10 Heat of formation + Delta-G solvation = -21.046393 kcal Electronic energy + Delta-G solvation = -29283.127345 eV Core-core repulsion = 25210.679403 eV Total energy + Delta-G solvation = -4072.447942 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.45018 -41.19415 -39.19559 -38.62375 -36.17652 -36.01202 -34.91209 -33.18688 -32.69464 -31.96126 -31.56637 -29.42095 -27.66314 -26.94460 -24.88201 -24.50314 -23.83326 -22.83434 -22.49621 -21.82282 -20.91810 -19.68004 -19.22710 -18.72865 -18.05817 -17.72430 -17.05696 -17.00560 -16.43067 -15.90494 -15.87014 -15.34912 -15.22783 -15.09683 -15.02220 -14.91157 -14.56569 -14.44092 -14.25722 -14.10863 -13.80647 -13.57041 -13.35827 -13.31338 -12.94713 -12.90572 -12.74779 -12.63708 -12.47043 -12.35583 -12.19800 -12.00007 -11.84693 -11.74139 -11.69935 -11.42613 -11.27920 -11.13819 -10.80752 -10.24213 -10.07757 -9.61143 -9.19740 -7.94862 -5.24649 -0.82543 -0.00477 0.98112 1.24827 1.36851 1.40528 1.46570 1.76921 2.07297 2.52229 2.56988 2.69866 3.27068 3.36598 3.53374 3.66643 3.81545 3.83308 3.87902 3.93406 4.14226 4.18180 4.25474 4.40502 4.48081 4.54911 4.59278 4.63089 4.69297 4.75711 4.80579 4.82273 4.85304 4.97829 4.99262 5.03379 5.06488 5.14514 5.16122 5.23452 5.27646 5.34107 5.38528 5.42614 5.46904 5.71193 5.79983 5.89821 6.29223 6.39902 6.45367 7.11349 7.16851 7.93938 8.10714 9.26980 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015029 B = 0.002167 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.650852 B =12919.364071 C =14141.530107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.261 3.739 3 N -0.510 5.510 4 C 0.034 3.966 5 C -0.066 4.066 6 C -0.069 4.069 7 C -0.116 4.116 8 C 0.554 3.446 9 O -0.582 6.582 10 N -0.700 5.700 11 C 0.127 3.873 12 C -0.124 4.124 13 C 0.181 3.819 14 H 0.040 0.960 15 N -0.748 5.748 16 C -0.198 4.198 17 H 0.062 0.938 18 C -0.072 4.072 19 N -0.988 5.988 20 Si 0.945 3.055 21 H -0.279 1.279 22 H -0.308 1.308 23 H -0.255 1.255 24 C -0.104 4.104 25 C -0.140 4.140 26 C -0.138 4.138 27 C -0.039 4.039 28 C -0.026 4.026 29 O -0.222 6.222 30 H 0.121 0.879 31 H 0.113 0.887 32 H 0.122 0.878 33 H 0.173 0.827 34 H 0.181 0.819 35 H 0.419 0.581 36 H 0.055 0.945 37 H 0.042 0.958 38 H 0.085 0.915 39 H 0.113 0.887 40 H 0.363 0.637 41 H 0.252 0.748 42 H 0.066 0.934 43 H 0.047 0.953 44 H 0.057 0.943 45 H 0.079 0.921 46 H 0.043 0.957 47 H 0.050 0.950 48 H 0.031 0.969 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.619 20.737 8.321 33.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.052 3.948 3 N -0.241 5.241 4 C -0.078 4.078 5 C -0.085 4.085 6 C -0.089 4.089 7 C -0.120 4.120 8 C 0.342 3.658 9 O -0.463 6.463 10 N -0.352 5.352 11 C 0.003 3.997 12 C -0.162 4.162 13 C 0.072 3.928 14 H 0.058 0.942 15 N -0.391 5.391 16 C -0.329 4.329 17 H 0.080 0.920 18 C -0.263 4.263 19 N -0.640 5.640 20 Si 0.774 3.226 21 H -0.206 1.206 22 H -0.236 1.236 23 H -0.180 1.180 24 C -0.125 4.125 25 C -0.197 4.197 26 C -0.196 4.196 27 C -0.059 4.059 28 C -0.076 4.076 29 O -0.115 6.115 30 H 0.139 0.861 31 H 0.132 0.868 32 H 0.141 0.859 33 H 0.190 0.810 34 H 0.199 0.801 35 H 0.259 0.741 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.103 0.897 39 H 0.132 0.868 40 H 0.196 0.804 41 H 0.061 0.939 42 H 0.085 0.915 43 H 0.067 0.933 44 H 0.076 0.924 45 H 0.097 0.903 46 H 0.062 0.938 47 H 0.069 0.931 48 H 0.050 0.950 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -25.666 20.343 8.412 33.814 hybrid contribution 0.284 -1.317 -1.296 1.869 sum -25.382 19.027 7.116 32.510 Atomic orbital electron populations 1.20836 0.76926 1.07421 1.07076 1.27780 0.98449 0.77309 0.91300 1.70682 1.00857 1.29641 1.22898 1.20507 0.93400 0.91106 1.02787 1.20326 0.87325 1.01966 0.98842 1.21231 0.99973 0.91215 0.96441 1.19574 0.91168 0.94752 1.06493 1.18335 0.84658 0.86623 0.76160 1.90822 1.88162 1.15679 1.51619 1.45719 1.04616 1.11198 1.73714 1.21255 0.81804 0.95396 1.01251 1.22077 0.91614 0.97459 1.05071 1.20451 0.92806 0.91832 0.87669 0.94207 1.42858 1.55464 1.31129 1.09655 1.18963 1.17089 1.00993 0.95896 0.92025 1.25388 1.01758 0.98243 1.00866 1.69871 1.45034 1.21937 1.27170 0.85549 0.79567 0.76823 0.80666 1.20563 1.23552 1.17992 1.21622 0.95143 0.96951 0.98757 1.21863 1.02639 0.99493 0.95721 1.21762 0.97302 0.99333 1.01185 1.19876 0.87044 1.00868 0.98149 1.20141 0.84042 0.94973 1.08438 1.84511 1.15193 1.37218 1.74535 0.86130 0.86836 0.85931 0.81006 0.80139 0.74140 0.92697 0.93909 0.89666 0.86848 0.80400 0.93899 0.91534 0.93346 0.92403 0.90266 0.93815 0.93094 0.94969 0.84690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.28 10.51 71.24 0.75 0.47 16 2 C 0.26 4.26 8.23 88.38 0.73 4.99 16 3 N -0.51 -10.31 11.33 -296.03 -3.35 -13.66 16 4 C 0.03 0.72 7.24 39.47 0.29 1.01 16 5 C -0.07 -0.98 10.03 22.20 0.22 -0.75 16 6 C -0.07 -0.95 9.46 22.27 0.21 -0.74 16 7 C -0.12 -2.54 5.88 -20.06 -0.12 -2.65 16 8 C 0.55 15.30 7.76 86.72 0.67 15.97 16 9 O -0.58 -22.32 16.32 -3.97 -0.06 -22.38 16 10 N -0.70 -15.10 5.50 -466.17 -2.57 -17.67 16 11 C 0.13 3.59 5.56 86.38 0.48 4.07 16 12 C -0.12 -2.83 4.65 30.60 0.14 -2.69 16 13 C 0.18 5.93 2.02 44.99 0.09 6.02 16 14 H 0.04 1.47 8.08 -2.39 -0.02 1.45 16 15 N -0.75 -32.37 4.26 -322.95 -1.37 -33.74 16 16 C -0.20 -10.85 8.05 84.03 0.68 -10.17 16 17 H 0.06 3.72 7.62 -2.91 -0.02 3.70 16 18 C -0.07 -4.26 5.50 84.86 0.47 -3.80 16 19 N -0.99 -64.23 13.97 21.65 0.30 -63.93 16 20 Si 0.94 46.53 27.74 68.60 1.90 48.43 16 21 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 22 H -0.31 -15.85 7.11 99.48 0.71 -15.15 16 23 H -0.26 -11.42 6.52 99.48 0.65 -10.77 16 24 C -0.10 -3.01 2.69 -10.79 -0.03 -3.04 16 25 C -0.14 -2.89 8.85 71.98 0.64 -2.25 16 26 C -0.14 -4.95 8.26 71.98 0.59 -4.36 16 27 C -0.04 -0.97 9.60 22.57 0.22 -0.75 16 28 C -0.03 -0.62 7.42 22.84 0.17 -0.45 16 29 O -0.22 -4.78 10.77 -9.60 -0.10 -4.88 16 30 H 0.12 0.12 8.14 -2.39 -0.02 0.10 16 31 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 32 H 0.12 0.19 8.14 -2.39 -0.02 0.17 16 33 H 0.17 1.51 8.06 -2.91 -0.02 1.49 16 34 H 0.18 0.93 6.37 -2.91 -0.02 0.91 16 35 H 0.42 5.02 6.47 -92.71 -0.60 4.42 16 36 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 37 H 0.04 1.57 7.75 -2.39 -0.02 1.55 16 38 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.11 1.75 6.17 -2.39 -0.01 1.74 16 40 H 0.36 15.35 5.66 -92.71 -0.52 14.82 16 41 H 0.25 15.85 8.31 -92.71 -0.77 15.08 16 42 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 44 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.08 1.19 6.32 -2.39 -0.02 1.18 16 46 H 0.04 1.95 6.01 -2.39 -0.01 1.93 16 47 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 48 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 49 H 0.14 3.60 7.63 -2.91 -0.02 3.58 16 Total: -1.00 -83.93 398.22 0.74 -83.19 By element: Atomic # 1 Polarization: 23.95 SS G_CDS: -0.20 Total: 23.75 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: 6.20 Total: 0.89 kcal Atomic # 7 Polarization: -122.00 SS G_CDS: -6.99 Total: -129.00 kcal Atomic # 8 Polarization: -27.10 SS G_CDS: -0.17 Total: -27.27 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 1.90 Total: 48.43 kcal Total: -83.93 0.74 -83.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717719650.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.145 kcal (2) G-P(sol) polarization free energy of solvation -83.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds