Wall clock time and date at job start Sat Apr 11 2020 07:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50705 * 109.47041 * 2 1 4 4 C 1.38252 * 120.00496 * 265.92624 * 3 2 1 5 5 C 1.38216 * 120.00072 * 180.25200 * 4 3 2 6 6 C 1.38257 * 119.99987 * 359.77301 * 5 4 3 7 7 C 1.38211 * 119.99730 * 0.02562 * 6 5 4 8 8 C 1.38214 * 119.99563 * 85.71626 * 3 2 1 9 9 C 1.50706 * 120.00123 * 359.97438 * 8 3 2 10 10 H 1.09000 * 109.46992 * 316.25007 * 9 8 3 11 11 C 1.53001 * 109.47136 * 196.24956 * 9 8 3 12 12 N 1.46496 * 109.47052 * 182.70483 * 11 9 8 13 13 C 1.34777 * 119.99861 * 180.02562 * 12 11 9 14 14 O 1.21279 * 120.00411 * 359.97438 * 13 12 11 15 15 C 1.50703 * 119.99797 * 180.02562 * 13 12 11 16 16 H 1.09006 * 110.21693 * 318.06618 * 15 13 12 17 17 C 1.54478 * 110.24855 * 79.99561 * 15 13 12 18 18 C 1.54628 * 101.76299 * 144.41769 * 17 15 13 19 19 C 1.51288 * 104.19725 * 335.20007 * 18 17 15 20 20 O 1.21279 * 124.94163 * 196.28528 * 19 18 17 21 21 N 1.34420 * 110.11145 * 16.25760 * 19 18 17 22 22 N 1.46494 * 109.46987 * 76.24766 * 9 8 3 23 23 C 1.36940 * 119.99911 * 64.07300 * 22 9 8 24 24 H 1.08001 * 120.00202 * 354.78262 * 23 22 9 25 25 C 1.38813 * 120.00091 * 174.78274 * 23 22 9 26 26 N 1.31619 * 119.99914 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 120.00131 * 180.02562 * 25 23 22 28 28 H 1.48507 * 109.47100 * 60.00193 * 27 25 23 29 29 H 1.48510 * 109.47002 * 179.97438 * 27 25 23 30 30 H 1.48498 * 109.47382 * 299.99708 * 27 25 23 31 31 H 1.09003 * 109.47237 * 185.08324 * 1 2 3 32 32 H 1.09004 * 109.47004 * 305.07465 * 1 2 3 33 33 H 1.09002 * 109.47856 * 65.07503 * 1 2 3 34 34 H 1.08999 * 109.46862 * 240.00846 * 2 1 3 35 35 H 1.08988 * 109.47747 * 120.00533 * 2 1 3 36 36 H 1.08007 * 119.99980 * 0.04045 * 4 3 2 37 37 H 1.08004 * 119.99806 * 179.78475 * 5 4 3 38 38 H 1.08001 * 119.99883 * 180.02562 * 6 5 4 39 39 H 1.08009 * 119.99870 * 179.97438 * 7 6 5 40 40 H 1.08997 * 109.47443 * 62.70100 * 11 9 8 41 41 H 1.09004 * 109.46826 * 302.70246 * 11 9 8 42 42 H 0.97004 * 120.00075 * 359.97438 * 12 11 9 43 43 H 1.09002 * 110.97048 * 262.53506 * 17 15 13 44 44 H 1.08999 * 110.96976 * 26.30209 * 17 15 13 45 45 H 1.08998 * 110.48747 * 93.88584 * 18 17 15 46 46 H 1.09006 * 110.48268 * 216.52314 * 18 17 15 47 47 H 0.97002 * 124.34720 * 180.38870 * 21 19 18 48 48 H 0.96998 * 120.00540 * 244.07309 * 22 9 8 49 49 H 0.97001 * 120.00379 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3429 2.0443 -1.1942 5 6 2.8086 3.3457 -1.1937 6 6 2.9593 4.0256 0.0007 7 6 2.6447 3.4036 1.1942 8 6 2.1783 2.1021 1.1937 9 6 1.8347 1.4243 2.4951 10 1 0.8955 0.8821 2.3854 11 6 1.6902 2.4771 3.5959 12 7 1.4199 1.8136 4.8737 13 6 1.2543 2.5472 5.9921 14 8 1.3295 3.7566 5.9408 15 6 0.9769 1.8646 7.3067 16 1 0.2631 1.0528 7.1664 17 6 2.2893 1.3232 7.9155 18 6 2.0491 1.5415 9.4274 19 6 1.0433 2.6701 9.4841 20 8 0.7973 3.3324 10.4699 21 7 0.4624 2.8323 8.2828 22 7 2.9012 0.4862 2.8535 23 6 4.1596 0.9520 3.1266 24 1 4.3878 1.9995 2.9962 25 6 5.1421 0.0777 3.5709 26 7 4.8639 -1.1988 3.7303 27 14 6.8585 0.7133 3.9441 28 1 6.7840 1.7421 5.0124 29 1 7.7146 -0.4115 4.3996 30 1 7.4414 1.3143 2.7177 31 1 -0.3634 -1.0236 0.0911 32 1 -0.3633 0.5906 0.8411 33 1 -0.3635 0.4331 -0.9319 34 1 1.8932 -0.5137 -0.8901 35 1 1.8934 -0.5138 0.8898 36 1 2.2250 1.5133 -2.1273 37 1 3.0545 3.8315 -2.1265 38 1 3.3227 5.0426 0.0010 39 1 2.7628 3.9346 2.1273 40 1 0.8652 3.1466 3.3524 41 1 2.6135 3.0514 3.6728 42 1 1.3594 0.8463 4.9147 43 1 2.4165 0.2645 7.6896 44 1 3.1469 1.9002 7.5695 45 1 1.6377 0.6405 9.8823 46 1 2.9758 1.8311 9.9229 47 1 -0.2106 3.5028 8.0864 48 1 2.7160 -0.4650 2.8975 49 1 5.5502 -1.8097 4.0412 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724507377.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:35:21 Heat of formation + Delta-G solvation = -60.562244 kcal Electronic energy + Delta-G solvation = -30977.841924 eV Core-core repulsion = 26903.680446 eV Total energy + Delta-G solvation = -4074.161477 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.79169 -40.79411 -39.96805 -37.58798 -37.08608 -35.19753 -34.84069 -33.54423 -32.26439 -31.32309 -30.11102 -29.92216 -28.01491 -26.18991 -24.64965 -24.03194 -23.50552 -21.85950 -21.51804 -21.40598 -20.93340 -19.29529 -18.81049 -18.24077 -17.34780 -17.07298 -16.92297 -16.57836 -16.33937 -16.07114 -15.78632 -15.67924 -15.31017 -15.02113 -14.79520 -14.70349 -14.28344 -14.22857 -14.17307 -13.91721 -13.81806 -13.63467 -13.47582 -12.99057 -12.94050 -12.85321 -12.81452 -12.53675 -12.46778 -12.11573 -12.07373 -11.92894 -11.74100 -11.64230 -11.26087 -11.17481 -11.02018 -10.87724 -10.17642 -9.93560 -9.57470 -9.34691 -8.92182 -7.86578 -5.11933 0.63477 0.64601 1.45179 1.45547 1.49619 1.52251 1.56328 2.02934 2.52677 2.59758 2.99804 3.32366 3.43581 3.48014 3.77639 3.92937 3.99675 4.04025 4.08392 4.10817 4.13598 4.24824 4.38173 4.42645 4.47892 4.48864 4.64772 4.76730 4.77836 4.80765 4.85348 4.90894 4.99408 5.03343 5.09065 5.19411 5.23846 5.30585 5.39618 5.52999 5.54777 5.64686 5.65940 5.73358 5.78749 5.91464 5.98001 6.29247 6.35258 6.63230 7.12086 7.27767 7.46014 8.09780 8.39452 9.34389 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009733 B = 0.003654 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2876.008040 B = 7661.292490 C = 8986.850168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.087 4.087 3 C -0.074 4.074 4 C -0.132 4.132 5 C -0.130 4.130 6 C -0.139 4.139 7 C -0.132 4.132 8 C -0.085 4.085 9 C 0.205 3.795 10 H 0.096 0.904 11 C 0.120 3.880 12 N -0.687 5.687 13 C 0.500 3.500 14 O -0.588 6.588 15 C 0.121 3.879 16 H 0.147 0.853 17 C -0.117 4.117 18 C -0.143 4.143 19 C 0.515 3.485 20 O -0.584 6.584 21 N -0.706 5.706 22 N -0.704 5.704 23 C -0.207 4.207 24 H 0.056 0.944 25 C -0.048 4.048 26 N -0.950 5.950 27 Si 0.935 3.065 28 H -0.289 1.289 29 H -0.296 1.296 30 H -0.295 1.295 31 H 0.068 0.932 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.135 0.865 37 H 0.139 0.861 38 H 0.130 0.870 39 H 0.111 0.889 40 H 0.063 0.937 41 H 0.042 0.958 42 H 0.414 0.586 43 H 0.130 0.870 44 H 0.063 0.937 45 H 0.141 0.859 46 H 0.109 0.891 47 H 0.412 0.588 48 H 0.383 0.617 49 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.949 -0.270 -3.297 11.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.124 4.124 3 C -0.075 4.075 4 C -0.150 4.150 5 C -0.148 4.148 6 C -0.157 4.157 7 C -0.150 4.150 8 C -0.088 4.088 9 C 0.096 3.904 10 H 0.114 0.886 11 C -0.006 4.006 12 N -0.337 5.337 13 C 0.285 3.715 14 O -0.468 6.468 15 C 0.013 3.987 16 H 0.165 0.835 17 C -0.155 4.155 18 C -0.183 4.183 19 C 0.304 3.696 20 O -0.465 6.465 21 N -0.360 5.360 22 N -0.343 5.343 23 C -0.339 4.339 24 H 0.074 0.926 25 C -0.241 4.241 26 N -0.601 5.601 27 Si 0.767 3.233 28 H -0.216 1.216 29 H -0.222 1.222 30 H -0.222 1.222 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.153 0.847 37 H 0.157 0.843 38 H 0.148 0.852 39 H 0.129 0.871 40 H 0.081 0.919 41 H 0.060 0.940 42 H 0.251 0.749 43 H 0.148 0.852 44 H 0.082 0.918 45 H 0.159 0.841 46 H 0.127 0.873 47 H 0.251 0.749 48 H 0.217 0.783 49 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -10.785 0.886 -2.764 11.169 hybrid contribution 1.322 0.352 -0.020 1.368 sum -9.463 1.239 -2.785 9.942 Atomic orbital electron populations 1.21695 0.93401 1.02288 1.02039 1.20558 0.96970 0.92016 1.02880 1.19887 0.98662 0.96480 0.92481 1.21251 1.00399 0.95511 0.97797 1.21314 1.00095 0.95061 0.98371 1.21300 1.01101 1.00618 0.92720 1.21254 1.00004 0.95500 0.98280 1.20409 0.98843 0.93689 0.95880 1.19469 0.92419 0.90171 0.88373 0.88617 1.21715 0.99296 0.95739 0.83877 1.45615 1.69748 1.11244 1.07090 1.21114 0.76587 0.87387 0.86379 1.90689 1.53320 1.16011 1.86817 1.21774 0.99511 0.91770 0.85679 0.83526 1.22635 0.94410 1.04794 0.93660 1.22410 0.99601 0.98638 0.97637 1.21467 0.81664 0.84666 0.81849 1.90716 1.67381 1.52478 1.35929 1.46039 1.42719 1.36576 1.10622 1.42320 1.05836 1.05132 1.81062 1.19009 0.88272 0.92867 1.33757 0.92588 1.24976 0.99658 0.95898 1.03615 1.69686 1.33444 1.02322 1.54603 0.85822 0.83293 0.76676 0.77488 1.21595 1.22203 1.22223 0.91309 0.92747 0.92274 0.91343 0.91382 0.84749 0.84271 0.85245 0.87118 0.91890 0.93986 0.74920 0.85210 0.91783 0.84144 0.87301 0.74877 0.78306 0.94219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.73 71.98 0.70 -2.09 16 2 C -0.09 -2.29 5.42 29.85 0.16 -2.13 16 3 C -0.07 -2.24 5.13 -19.87 -0.10 -2.34 16 4 C -0.13 -3.58 9.69 22.27 0.22 -3.36 16 5 C -0.13 -3.43 10.05 22.27 0.22 -3.21 16 6 C -0.14 -4.04 10.05 22.27 0.22 -3.81 16 7 C -0.13 -4.33 8.99 22.27 0.20 -4.13 16 8 C -0.09 -2.78 4.89 -19.86 -0.10 -2.88 16 9 C 0.21 6.46 2.21 44.25 0.10 6.56 16 10 H 0.10 2.57 6.15 -2.39 -0.01 2.55 16 11 C 0.12 3.84 3.85 86.38 0.33 4.17 16 12 N -0.69 -19.27 5.40 -463.06 -2.50 -21.78 16 13 C 0.50 14.51 7.03 87.66 0.62 15.13 16 14 O -0.59 -22.19 16.54 -3.03 -0.05 -22.24 16 15 C 0.12 2.52 3.93 44.70 0.18 2.70 16 16 H 0.15 1.89 8.14 -2.38 -0.02 1.87 16 17 C -0.12 -2.34 6.67 31.65 0.21 -2.12 16 18 C -0.14 -2.67 6.86 30.59 0.21 -2.46 16 19 C 0.52 13.82 8.43 87.90 0.74 14.56 16 20 O -0.58 -20.66 18.03 -3.03 -0.05 -20.72 16 21 N -0.71 -17.01 5.46 -442.96 -2.42 -19.43 16 22 N -0.70 -27.42 4.10 -326.50 -1.34 -28.75 16 23 C -0.21 -9.75 8.79 84.03 0.74 -9.01 16 24 H 0.06 2.79 7.08 -2.91 -0.02 2.77 16 25 C -0.05 -2.43 5.50 84.86 0.47 -1.96 16 26 N -0.95 -49.84 13.06 21.65 0.28 -49.56 16 27 Si 0.93 43.56 29.55 68.60 2.03 45.59 16 28 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 29 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 30 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 31 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.05 1.11 6.86 -2.39 -0.02 1.09 16 33 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.07 1.70 8.06 -2.39 -0.02 1.68 16 35 H 0.07 2.08 6.07 -2.39 -0.01 2.07 16 36 H 0.13 2.98 8.06 -2.91 -0.02 2.95 16 37 H 0.14 2.82 8.06 -2.91 -0.02 2.80 16 38 H 0.13 3.18 8.06 -2.91 -0.02 3.15 16 39 H 0.11 3.76 5.89 -2.91 -0.02 3.74 16 40 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.04 1.63 5.73 -2.39 -0.01 1.62 16 42 H 0.41 10.23 8.22 -92.71 -0.76 9.47 16 43 H 0.13 2.02 8.14 -2.39 -0.02 2.01 16 44 H 0.06 1.66 7.91 -2.39 -0.02 1.64 16 45 H 0.14 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.11 2.01 8.14 -2.38 -0.02 1.99 16 47 H 0.41 10.01 8.94 -92.71 -0.83 9.18 16 48 H 0.38 15.78 7.55 -92.71 -0.70 15.08 16 49 H 0.25 13.10 8.31 -92.71 -0.77 12.33 16 Total: -1.00 -68.36 398.61 -0.22 -68.58 By element: Atomic # 1 Polarization: 45.97 SS G_CDS: -1.28 Total: 44.69 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: 5.12 Total: 3.61 kcal Atomic # 7 Polarization: -113.54 SS G_CDS: -5.98 Total: -119.52 kcal Atomic # 8 Polarization: -42.85 SS G_CDS: -0.10 Total: -42.95 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -68.36 -0.22 -68.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724507377.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.016 kcal (2) G-P(sol) polarization free energy of solvation -68.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds