Wall clock time and date at job start Sat Apr 11 2020 07:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.49626 * 2 1 4 4 C 1.53198 * 109.49815 * 239.90656 * 2 1 3 5 5 N 1.46919 * 108.77507 * 185.41227 * 4 2 1 6 6 C 1.36941 * 120.62865 * 233.63013 * 5 4 2 7 7 H 1.08008 * 119.99793 * 148.71866 * 6 5 4 8 8 C 1.38808 * 120.00134 * 328.70982 * 6 5 4 9 9 N 1.31620 * 119.99806 * 350.06477 * 8 6 5 10 10 Si 1.86799 * 120.00258 * 170.06457 * 8 6 5 11 11 H 1.48504 * 109.46979 * 89.99898 * 10 8 6 12 12 H 1.48500 * 109.47030 * 210.00131 * 10 8 6 13 13 H 1.48503 * 109.46968 * 330.00403 * 10 8 6 14 14 C 1.46997 * 118.75848 * 53.60720 * 5 4 2 15 15 C 1.53194 * 108.73816 * 306.40907 * 14 5 4 16 16 C 1.53033 * 109.49950 * 120.06550 * 2 1 3 17 17 H 1.09005 * 109.46066 * 61.29991 * 16 2 1 18 18 N 1.46495 * 109.45166 * 301.33216 * 16 2 1 19 19 C 1.34785 * 120.00460 * 154.93780 * 18 16 2 20 20 O 1.21359 * 119.99385 * 0.02562 * 19 18 16 21 21 C 1.49349 * 119.99987 * 180.02562 * 19 18 16 22 22 O 1.21377 * 120.00466 * 359.97438 * 21 19 18 23 23 N 1.34774 * 119.99597 * 179.97438 * 21 19 18 24 24 C 1.39731 * 119.99783 * 175.28602 * 23 21 19 25 25 C 1.38929 * 120.07629 * 215.11030 * 24 23 21 26 26 C 1.38093 * 119.92174 * 179.76861 * 25 24 23 27 27 C 1.38289 * 120.07692 * 0.51465 * 26 25 24 28 28 C 1.38301 * 120.15413 * 359.74336 * 27 26 25 29 29 C 1.38093 * 120.07072 * 359.97438 * 28 27 26 30 30 H 1.08997 * 109.47677 * 299.93066 * 1 2 3 31 31 H 1.09003 * 109.47678 * 59.93566 * 1 2 3 32 32 H 1.09009 * 109.47177 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47389 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47009 * 300.06777 * 3 2 1 35 35 H 1.09001 * 109.47032 * 60.06337 * 3 2 1 36 36 H 1.09001 * 109.58388 * 305.19912 * 4 2 1 37 37 H 1.09003 * 109.58590 * 65.48149 * 4 2 1 38 38 H 0.97001 * 119.99934 * 179.97438 * 9 8 6 39 39 H 1.09005 * 109.63191 * 186.62172 * 14 5 4 40 40 H 1.08998 * 109.58181 * 66.16929 * 14 5 4 41 41 H 1.09002 * 109.49945 * 294.65804 * 15 14 5 42 42 H 1.09002 * 109.49939 * 174.58813 * 15 14 5 43 43 H 0.97008 * 120.00005 * 334.93639 * 18 16 2 44 44 H 0.96995 * 120.00481 * 355.28865 * 23 21 19 45 45 H 1.08000 * 120.03675 * 0.03189 * 25 24 23 46 46 H 1.07996 * 119.96322 * 180.27571 * 26 25 24 47 47 H 1.08005 * 119.93025 * 179.71936 * 27 26 25 48 48 H 1.08003 * 119.96450 * 180.02562 * 28 27 26 49 49 H 1.07999 * 120.03472 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0406 1.4423 0.0000 4 6 2.0413 -0.7241 -1.2495 5 7 3.5045 -0.8294 -1.1694 6 6 4.2935 -0.3789 -2.1941 7 1 5.2773 0.0148 -1.9852 8 6 3.8289 -0.4285 -3.5012 9 7 2.7211 -1.0817 -3.7815 10 14 4.7758 0.4318 -4.8623 11 1 5.7700 -0.5063 -5.4429 12 1 3.8317 0.8703 -5.9213 13 1 5.4787 1.6151 -4.3047 14 6 4.1059 -1.4268 0.0314 15 6 3.5709 -0.6946 1.2661 16 6 2.0407 -0.7227 1.2485 17 1 1.6967 -1.7570 1.2357 18 7 1.5265 -0.0521 2.4451 19 6 1.3972 -0.7372 3.5986 20 8 1.7072 -1.9095 3.6460 21 6 0.8723 -0.0535 4.8183 22 8 0.5627 1.1192 4.7710 23 7 0.7426 -0.7387 5.9716 24 6 0.3456 -0.0770 7.1365 25 6 0.8618 -0.4636 8.3671 26 6 0.4709 0.1958 9.5158 27 6 -0.4412 1.2327 9.4435 28 6 -0.9611 1.6166 8.2207 29 6 -0.5702 0.9654 7.0674 30 1 -0.3634 0.5127 0.8905 31 1 -0.3634 0.5148 -0.8894 32 1 -0.3634 -1.0277 -0.0005 33 1 3.1306 1.4419 -0.0005 34 1 1.6764 1.9566 -0.8894 35 1 1.6784 1.9559 0.8906 36 1 1.6052 -1.7219 -1.2976 37 1 1.7615 -0.1597 -2.1391 38 1 2.3963 -1.1160 -4.6949 39 1 5.1903 -1.3247 -0.0125 40 1 3.8382 -2.4819 0.0878 41 1 3.9158 0.3393 1.2539 42 1 3.9334 -1.1886 2.1676 43 1 1.2790 0.8851 2.4073 44 1 0.9247 -1.6912 5.9930 45 1 1.5711 -1.2760 8.4247 46 1 0.8751 -0.1013 10.4722 47 1 -0.7486 1.7437 10.3439 48 1 -1.6729 2.4271 8.1677 49 1 -0.9762 1.2660 6.1129 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733874940.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:35:58 Heat of formation + Delta-G solvation = -17.846176 kcal Electronic energy + Delta-G solvation = -30633.302611 eV Core-core repulsion = 26560.993442 eV Total energy + Delta-G solvation = -4072.309170 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.23950 -39.88662 -38.69813 -37.86939 -35.41402 -34.54417 -32.89720 -32.04072 -31.23168 -30.10034 -29.49710 -26.79501 -26.19884 -25.81942 -24.43187 -23.18091 -22.59442 -21.63752 -20.65731 -20.26672 -19.22918 -18.10243 -17.53579 -16.90223 -16.69834 -16.29138 -15.97477 -15.48176 -14.94295 -14.89858 -14.54727 -14.17721 -14.10109 -13.93956 -13.70107 -13.56292 -13.40045 -13.21158 -13.06203 -12.72270 -12.35540 -12.22837 -11.69793 -11.65890 -11.56407 -11.42760 -11.34070 -11.08269 -10.90653 -10.72550 -10.68280 -10.62661 -10.27313 -10.13762 -10.03070 -9.81867 -9.70007 -9.45385 -9.23405 -8.87403 -8.52791 -8.50284 -6.64991 -5.81534 -3.29171 0.77712 1.08937 1.45261 2.19123 3.07832 3.35157 3.42396 3.43630 3.48375 3.54413 4.34834 4.45970 4.59104 4.64143 4.84960 5.08553 5.10819 5.18780 5.24653 5.24954 5.37390 5.48695 5.54923 5.69069 5.78569 5.90505 5.93311 5.97491 6.01440 6.07765 6.10397 6.13741 6.23125 6.26291 6.33622 6.38932 6.42145 6.55006 6.64824 6.66673 6.76010 6.78410 6.86105 6.93381 7.01127 7.29174 7.31192 7.57670 7.65746 7.76715 7.96847 8.44611 9.19233 9.80103 10.38150 11.26704 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.029501 B = 0.002175 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.885937 B =12867.684997 C =13138.363466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.098 4.098 3 C -0.129 4.129 4 C 0.187 3.813 5 N -0.590 5.590 6 C -0.250 4.250 7 H 0.064 0.936 8 C 0.005 3.995 9 N -0.905 5.905 10 Si 0.903 3.097 11 H -0.287 1.287 12 H -0.290 1.290 13 H -0.279 1.279 14 C 0.148 3.852 15 C -0.144 4.144 16 C 0.160 3.840 17 H 0.087 0.913 18 N -0.682 5.682 19 C 0.504 3.496 20 O -0.521 6.521 21 C 0.509 3.491 22 O -0.501 6.501 23 N -0.648 5.648 24 C 0.141 3.859 25 C -0.140 4.140 26 C -0.103 4.103 27 C -0.134 4.134 28 C -0.102 4.102 29 C -0.120 4.120 30 H 0.043 0.957 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.071 0.929 34 H 0.054 0.946 35 H 0.031 0.969 36 H 0.020 0.980 37 H 0.097 0.903 38 H 0.254 0.746 39 H 0.058 0.942 40 H 0.021 0.979 41 H 0.066 0.934 42 H 0.054 0.946 43 H 0.409 0.591 44 H 0.423 0.577 45 H 0.128 0.872 46 H 0.127 0.873 47 H 0.123 0.877 48 H 0.126 0.874 49 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.245 3.096 22.826 24.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.100 4.100 3 C -0.186 4.186 4 C 0.060 3.940 5 N -0.312 5.312 6 C -0.380 4.380 7 H 0.082 0.918 8 C -0.194 4.194 9 N -0.549 5.549 10 Si 0.733 3.267 11 H -0.214 1.214 12 H -0.216 1.216 13 H -0.205 1.205 14 C 0.021 3.979 15 C -0.184 4.184 16 C 0.057 3.943 17 H 0.105 0.895 18 N -0.334 5.334 19 C 0.284 3.716 20 O -0.398 6.398 21 C 0.291 3.709 22 O -0.375 6.375 23 N -0.295 5.295 24 C 0.047 3.953 25 C -0.161 4.161 26 C -0.121 4.121 27 C -0.153 4.153 28 C -0.121 4.121 29 C -0.140 4.140 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.073 0.927 35 H 0.050 0.950 36 H 0.038 0.962 37 H 0.115 0.885 38 H 0.064 0.936 39 H 0.076 0.924 40 H 0.039 0.961 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.246 0.754 44 H 0.261 0.739 45 H 0.146 0.854 46 H 0.145 0.855 47 H 0.141 0.859 48 H 0.144 0.856 49 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -7.265 3.064 22.535 23.875 hybrid contribution 0.418 0.360 -0.680 0.875 sum -6.847 3.423 21.856 23.157 Atomic orbital electron populations 1.21789 0.95265 1.01395 1.00957 1.21623 0.94611 0.96961 0.96819 1.21769 1.02617 0.94585 0.99670 1.20867 0.83096 0.96800 0.93194 1.44030 1.01635 1.69156 1.16341 1.19137 0.99418 1.34220 0.85199 0.91824 1.25154 0.97986 0.98865 0.97371 1.69947 1.22975 1.43222 1.18769 0.86288 0.79140 0.79366 0.81897 1.21384 1.21616 1.20482 1.20897 0.96753 0.94254 0.86039 1.22484 0.94219 1.01974 0.99759 1.21253 0.94255 0.96952 0.81813 0.89544 1.46241 1.62517 1.15314 1.09375 1.19744 0.80449 0.87021 0.84434 1.90779 1.49264 1.15384 1.84360 1.20610 0.78696 0.86852 0.84740 1.90759 1.46693 1.15752 1.84254 1.43167 1.65959 1.13450 1.06935 1.17792 0.96017 0.96020 0.85465 1.20969 1.01300 1.02434 0.91367 1.20954 0.97525 0.95839 0.97801 1.21192 0.98287 0.97925 0.97880 1.21095 0.99586 0.99430 0.91986 1.21343 0.96239 0.96392 1.00004 0.93793 0.92316 0.92991 0.91056 0.92676 0.95021 0.96179 0.88473 0.93560 0.92394 0.96111 0.91565 0.92687 0.75409 0.73855 0.85415 0.85540 0.85903 0.85570 0.84258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 8.31 37.15 0.31 -1.79 16 2 C -0.10 -1.71 0.56 -154.39 -0.09 -1.79 16 3 C -0.13 -2.18 7.83 37.16 0.29 -1.89 16 4 C 0.19 4.18 3.93 -3.71 -0.01 4.17 16 5 N -0.59 -13.98 2.43 -172.26 -0.42 -14.39 16 6 C -0.25 -6.55 9.59 -15.06 -0.14 -6.69 16 7 H 0.06 1.65 7.85 -52.48 -0.41 1.24 16 8 C 0.00 0.13 5.07 -17.43 -0.09 0.04 16 9 N -0.90 -25.32 11.00 55.49 0.61 -24.71 16 10 Si 0.90 21.17 29.56 -169.99 -5.03 16.15 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 14 C 0.15 3.02 6.52 -3.67 -0.02 3.00 16 15 C -0.14 -2.51 5.31 -26.61 -0.14 -2.66 16 16 C 0.16 2.67 1.57 -67.89 -0.11 2.56 16 17 H 0.09 1.59 7.58 -51.93 -0.39 1.20 16 18 N -0.68 -9.82 4.28 -54.23 -0.23 -10.05 16 19 C 0.50 7.21 7.85 -11.63 -0.09 7.11 16 20 O -0.52 -8.43 16.14 5.49 0.09 -8.34 16 21 C 0.51 6.53 7.73 -11.63 -0.09 6.44 16 22 O -0.50 -7.14 13.92 5.47 0.08 -7.07 16 23 N -0.65 -6.89 5.32 -10.30 -0.05 -6.95 16 24 C 0.14 1.46 6.29 -83.75 -0.53 0.94 16 25 C -0.14 -1.18 9.97 -39.38 -0.39 -1.58 16 26 C -0.10 -0.76 10.04 -39.62 -0.40 -1.15 16 27 C -0.13 -1.00 10.04 -39.54 -0.40 -1.40 16 28 C -0.10 -0.88 10.04 -39.61 -0.40 -1.28 16 29 C -0.12 -1.28 8.69 -39.38 -0.34 -1.62 16 30 H 0.04 0.60 7.36 -51.93 -0.38 0.22 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.05 0.80 8.14 -51.92 -0.42 0.38 16 33 H 0.07 1.33 5.97 -51.93 -0.31 1.02 16 34 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.03 0.45 6.58 -51.93 -0.34 0.11 16 36 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.10 2.45 6.07 -51.93 -0.32 2.14 16 38 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 39 H 0.06 1.16 7.94 -51.93 -0.41 0.75 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.07 1.16 6.34 -51.93 -0.33 0.83 16 42 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.41 5.52 6.13 -40.82 -0.25 5.27 16 44 H 0.42 3.81 8.30 -40.82 -0.34 3.48 16 45 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 46 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 47 H 0.12 0.63 8.06 -52.48 -0.42 0.21 16 48 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 49 H 0.14 1.63 6.24 -52.49 -0.33 1.30 16 LS Contribution 389.06 15.07 5.86 5.86 Total: -1.00 -29.68 389.06 -8.91 -38.59 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -7.18 Total: 8.49 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: -2.64 Total: 2.41 kcal Atomic # 7 Polarization: -56.01 SS G_CDS: -0.09 Total: -56.11 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: 0.16 Total: -15.40 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.15 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -29.68 -8.91 -38.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733874940.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.747 kcal (2) G-P(sol) polarization free energy of solvation -29.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds