Wall clock time and date at job start Sat Apr 11 2020 07:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.49626 * 2 1 4 4 C 1.53198 * 109.49815 * 239.90656 * 2 1 3 5 5 N 1.46919 * 108.77507 * 185.41227 * 4 2 1 6 6 C 1.36941 * 120.62865 * 233.63013 * 5 4 2 7 7 H 1.08008 * 119.99793 * 148.71866 * 6 5 4 8 8 C 1.38808 * 120.00134 * 328.70982 * 6 5 4 9 9 N 1.31620 * 119.99806 * 350.06477 * 8 6 5 10 10 Si 1.86799 * 120.00258 * 170.06457 * 8 6 5 11 11 H 1.48504 * 109.46979 * 89.99898 * 10 8 6 12 12 H 1.48500 * 109.47030 * 210.00131 * 10 8 6 13 13 H 1.48503 * 109.46968 * 330.00403 * 10 8 6 14 14 C 1.46997 * 118.75848 * 53.60720 * 5 4 2 15 15 C 1.53194 * 108.73816 * 306.40907 * 14 5 4 16 16 C 1.53033 * 109.49950 * 120.06550 * 2 1 3 17 17 H 1.09005 * 109.46066 * 61.29991 * 16 2 1 18 18 N 1.46495 * 109.45166 * 301.33216 * 16 2 1 19 19 C 1.34785 * 120.00460 * 154.93780 * 18 16 2 20 20 O 1.21359 * 119.99385 * 0.02562 * 19 18 16 21 21 C 1.49349 * 119.99987 * 180.02562 * 19 18 16 22 22 O 1.21377 * 120.00466 * 359.97438 * 21 19 18 23 23 N 1.34774 * 119.99597 * 179.97438 * 21 19 18 24 24 C 1.39731 * 119.99783 * 175.28602 * 23 21 19 25 25 C 1.38929 * 120.07629 * 215.11030 * 24 23 21 26 26 C 1.38093 * 119.92174 * 179.76861 * 25 24 23 27 27 C 1.38289 * 120.07692 * 0.51465 * 26 25 24 28 28 C 1.38301 * 120.15413 * 359.74336 * 27 26 25 29 29 C 1.38093 * 120.07072 * 359.97438 * 28 27 26 30 30 H 1.08997 * 109.47677 * 299.93066 * 1 2 3 31 31 H 1.09003 * 109.47678 * 59.93566 * 1 2 3 32 32 H 1.09009 * 109.47177 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47389 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47009 * 300.06777 * 3 2 1 35 35 H 1.09001 * 109.47032 * 60.06337 * 3 2 1 36 36 H 1.09001 * 109.58388 * 305.19912 * 4 2 1 37 37 H 1.09003 * 109.58590 * 65.48149 * 4 2 1 38 38 H 0.97001 * 119.99934 * 179.97438 * 9 8 6 39 39 H 1.09005 * 109.63191 * 186.62172 * 14 5 4 40 40 H 1.08998 * 109.58181 * 66.16929 * 14 5 4 41 41 H 1.09002 * 109.49945 * 294.65804 * 15 14 5 42 42 H 1.09002 * 109.49939 * 174.58813 * 15 14 5 43 43 H 0.97008 * 120.00005 * 334.93639 * 18 16 2 44 44 H 0.96995 * 120.00481 * 355.28865 * 23 21 19 45 45 H 1.08000 * 120.03675 * 0.03189 * 25 24 23 46 46 H 1.07996 * 119.96322 * 180.27571 * 26 25 24 47 47 H 1.08005 * 119.93025 * 179.71936 * 27 26 25 48 48 H 1.08003 * 119.96450 * 180.02562 * 28 27 26 49 49 H 1.07999 * 120.03472 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0406 1.4423 0.0000 4 6 2.0413 -0.7241 -1.2495 5 7 3.5045 -0.8294 -1.1694 6 6 4.2935 -0.3789 -2.1941 7 1 5.2773 0.0148 -1.9852 8 6 3.8289 -0.4285 -3.5012 9 7 2.7211 -1.0817 -3.7815 10 14 4.7758 0.4318 -4.8623 11 1 5.7700 -0.5063 -5.4429 12 1 3.8317 0.8703 -5.9213 13 1 5.4787 1.6151 -4.3047 14 6 4.1059 -1.4268 0.0314 15 6 3.5709 -0.6946 1.2661 16 6 2.0407 -0.7227 1.2485 17 1 1.6967 -1.7570 1.2357 18 7 1.5265 -0.0521 2.4451 19 6 1.3972 -0.7372 3.5986 20 8 1.7072 -1.9095 3.6460 21 6 0.8723 -0.0535 4.8183 22 8 0.5627 1.1192 4.7710 23 7 0.7426 -0.7387 5.9716 24 6 0.3456 -0.0770 7.1365 25 6 0.8618 -0.4636 8.3671 26 6 0.4709 0.1958 9.5158 27 6 -0.4412 1.2327 9.4435 28 6 -0.9611 1.6166 8.2207 29 6 -0.5702 0.9654 7.0674 30 1 -0.3634 0.5127 0.8905 31 1 -0.3634 0.5148 -0.8894 32 1 -0.3634 -1.0277 -0.0005 33 1 3.1306 1.4419 -0.0005 34 1 1.6764 1.9566 -0.8894 35 1 1.6784 1.9559 0.8906 36 1 1.6052 -1.7219 -1.2976 37 1 1.7615 -0.1597 -2.1391 38 1 2.3963 -1.1160 -4.6949 39 1 5.1903 -1.3247 -0.0125 40 1 3.8382 -2.4819 0.0878 41 1 3.9158 0.3393 1.2539 42 1 3.9334 -1.1886 2.1676 43 1 1.2790 0.8851 2.4073 44 1 0.9247 -1.6912 5.9930 45 1 1.5711 -1.2760 8.4247 46 1 0.8751 -0.1013 10.4722 47 1 -0.7486 1.7437 10.3439 48 1 -1.6729 2.4271 8.1677 49 1 -0.9762 1.2660 6.1129 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733874940.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:35:56 Heat of formation + Delta-G solvation = -35.215503 kcal Electronic energy + Delta-G solvation = -30634.055802 eV Core-core repulsion = 26560.993442 eV Total energy + Delta-G solvation = -4073.062360 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.26116 -41.03248 -39.76074 -39.02397 -36.57369 -35.89038 -34.30354 -33.82166 -31.85810 -31.31760 -30.72880 -28.17869 -27.62113 -27.47065 -25.79670 -24.11060 -23.66963 -22.68137 -22.31039 -21.36068 -20.34223 -19.38953 -18.78884 -18.30181 -17.81403 -17.23921 -16.94060 -16.81835 -16.61418 -15.86770 -15.73527 -15.52765 -15.32565 -15.10015 -14.95604 -14.82116 -14.79959 -14.33091 -14.26786 -13.86796 -13.76364 -13.28254 -13.06189 -13.02833 -12.90846 -12.74546 -12.64044 -12.47975 -12.36962 -12.33823 -12.21530 -11.90884 -11.85073 -11.67225 -11.46761 -11.36436 -11.19928 -10.73276 -10.53554 -10.18975 -9.87825 -9.24760 -8.60537 -7.84342 -5.34535 -0.07707 0.45704 0.56880 1.17024 1.48100 1.49473 1.58139 2.01291 2.48944 2.52080 2.86328 3.25936 3.32941 3.65296 3.68939 3.92943 3.98795 4.05941 4.07825 4.31220 4.31712 4.42485 4.47934 4.53190 4.54204 4.57603 4.62768 4.76859 4.83960 4.90970 4.94270 5.03435 5.08072 5.10630 5.20446 5.22587 5.28013 5.29345 5.31771 5.39590 5.43346 5.51105 5.61292 5.62732 5.69211 5.76435 5.86612 6.05469 6.25806 6.44319 6.61405 6.82911 7.18649 7.86493 8.40076 9.21619 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.029501 B = 0.002175 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.885937 B =12867.684997 C =13138.363466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.088 4.088 3 C -0.122 4.122 4 C 0.197 3.803 5 N -0.604 5.604 6 C -0.254 4.254 7 H 0.065 0.935 8 C -0.047 4.047 9 N -0.935 5.935 10 Si 0.965 3.035 11 H -0.288 1.288 12 H -0.294 1.294 13 H -0.270 1.270 14 C 0.145 3.855 15 C -0.131 4.131 16 C 0.172 3.828 17 H 0.070 0.930 18 N -0.676 5.676 19 C 0.509 3.491 20 O -0.540 6.540 21 C 0.514 3.486 22 O -0.517 6.517 23 N -0.635 5.635 24 C 0.115 3.885 25 C -0.142 4.142 26 C -0.103 4.103 27 C -0.131 4.131 28 C -0.111 4.111 29 C -0.141 4.141 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.047 0.953 33 H 0.053 0.947 34 H 0.046 0.954 35 H 0.063 0.937 36 H -0.009 1.009 37 H 0.066 0.934 38 H 0.249 0.751 39 H 0.060 0.940 40 H 0.011 0.989 41 H 0.071 0.929 42 H 0.066 0.934 43 H 0.416 0.584 44 H 0.430 0.570 45 H 0.145 0.855 46 H 0.155 0.845 47 H 0.150 0.850 48 H 0.141 0.859 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.217 4.243 25.843 27.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.091 4.091 3 C -0.180 4.180 4 C 0.070 3.930 5 N -0.327 5.327 6 C -0.385 4.385 7 H 0.083 0.917 8 C -0.242 4.242 9 N -0.581 5.581 10 Si 0.793 3.207 11 H -0.215 1.215 12 H -0.220 1.220 13 H -0.195 1.195 14 C 0.019 3.981 15 C -0.171 4.171 16 C 0.068 3.932 17 H 0.088 0.912 18 N -0.328 5.328 19 C 0.289 3.711 20 O -0.417 6.417 21 C 0.296 3.704 22 O -0.392 6.392 23 N -0.282 5.282 24 C 0.022 3.978 25 C -0.161 4.161 26 C -0.121 4.121 27 C -0.149 4.149 28 C -0.129 4.129 29 C -0.161 4.161 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.009 0.991 37 H 0.084 0.916 38 H 0.059 0.941 39 H 0.078 0.922 40 H 0.029 0.971 41 H 0.090 0.910 42 H 0.084 0.916 43 H 0.255 0.745 44 H 0.269 0.731 45 H 0.163 0.837 46 H 0.173 0.827 47 H 0.168 0.832 48 H 0.159 0.841 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.238 4.211 25.610 26.944 hybrid contribution 0.405 -0.052 -1.476 1.532 sum -6.833 4.159 24.134 25.425 Atomic orbital electron populations 1.21742 0.93461 1.01581 1.02104 1.21385 0.95983 0.96875 0.94808 1.21685 1.01406 0.94018 1.00841 1.20612 0.82623 0.95288 0.94459 1.44241 1.02056 1.69594 1.16800 1.19424 0.99617 1.33460 0.85980 0.91704 1.25845 0.98987 0.99974 0.99412 1.70115 1.24439 1.44835 1.18692 0.85320 0.77726 0.78502 0.79144 1.21480 1.22047 1.19462 1.20982 0.96953 0.93992 0.86200 1.22298 0.94626 1.01801 0.98358 1.20881 0.93734 0.96146 0.82420 0.91176 1.45984 1.62573 1.15514 1.08757 1.19973 0.79736 0.86673 0.84705 1.90774 1.49985 1.16267 1.84713 1.20199 0.78923 0.86554 0.84756 1.90761 1.47767 1.16270 1.84442 1.43065 1.64927 1.13689 1.06529 1.18010 0.97178 0.96788 0.85807 1.21241 1.01245 1.02799 0.90861 1.21360 0.96937 0.95226 0.98592 1.21569 0.97446 0.97619 0.98309 1.21341 0.99946 0.99719 0.91912 1.21356 0.97226 0.97346 1.00129 0.91355 0.92395 0.93364 0.92801 0.93507 0.91819 0.99063 0.91562 0.94143 0.92166 0.97064 0.91042 0.91583 0.74540 0.73064 0.83690 0.82714 0.83247 0.84097 0.85994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.96 8.31 71.98 0.60 -3.36 16 2 C -0.09 -3.07 0.56 -52.11 -0.03 -3.10 16 3 C -0.12 -4.00 7.83 71.98 0.56 -3.44 16 4 C 0.20 9.10 3.93 86.37 0.34 9.44 16 5 N -0.60 -29.30 2.43 -698.90 -1.70 -31.00 16 6 C -0.25 -13.54 9.59 84.03 0.81 -12.74 16 7 H 0.07 3.38 7.85 -2.91 -0.02 3.35 16 8 C -0.05 -2.55 5.07 84.86 0.43 -2.12 16 9 N -0.93 -54.06 11.00 21.65 0.24 -53.82 16 10 Si 0.96 44.18 29.56 68.60 2.03 46.21 16 11 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 12 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 13 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 14 C 0.14 6.00 6.52 86.35 0.56 6.56 16 15 C -0.13 -4.47 5.31 30.67 0.16 -4.30 16 16 C 0.17 5.64 1.57 45.02 0.07 5.71 16 17 H 0.07 2.58 7.58 -2.38 -0.02 2.56 16 18 N -0.68 -18.46 4.28 -443.84 -1.90 -20.36 16 19 C 0.51 13.92 7.85 87.24 0.68 14.61 16 20 O -0.54 -16.93 16.14 -3.27 -0.05 -16.98 16 21 C 0.51 12.64 7.73 87.24 0.67 13.31 16 22 O -0.52 -14.23 13.92 -3.33 -0.05 -14.28 16 23 N -0.64 -12.78 5.32 -304.84 -1.62 -14.41 16 24 C 0.12 2.24 6.29 38.21 0.24 2.48 16 25 C -0.14 -2.04 9.97 22.40 0.22 -1.82 16 26 C -0.10 -1.18 10.04 22.25 0.22 -0.95 16 27 C -0.13 -1.55 10.04 22.30 0.22 -1.33 16 28 C -0.11 -1.71 10.04 22.25 0.22 -1.48 16 29 C -0.14 -2.87 8.69 22.40 0.19 -2.68 16 30 H 0.07 1.74 7.36 -2.39 -0.02 1.72 16 31 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 33 H 0.05 1.96 5.97 -2.38 -0.01 1.95 16 34 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.06 1.67 6.58 -2.39 -0.02 1.65 16 36 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 37 H 0.07 3.49 6.07 -2.39 -0.01 3.47 16 38 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 39 H 0.06 2.42 7.94 -2.38 -0.02 2.40 16 40 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.07 2.39 6.34 -2.39 -0.02 2.38 16 42 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.42 10.34 6.13 -92.70 -0.57 9.77 16 44 H 0.43 7.23 8.30 -92.71 -0.77 6.46 16 45 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 46 H 0.16 0.87 8.06 -2.91 -0.02 0.85 16 47 H 0.15 0.95 8.06 -2.91 -0.02 0.92 16 48 H 0.14 1.63 8.06 -2.91 -0.02 1.60 16 49 H 0.12 2.86 6.24 -2.91 -0.02 2.84 16 Total: -1.00 -65.43 389.06 2.79 -62.64 By element: Atomic # 1 Polarization: 27.57 SS G_CDS: -0.35 Total: 27.22 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: 6.19 Total: 14.78 kcal Atomic # 7 Polarization: -114.61 SS G_CDS: -4.98 Total: -119.59 kcal Atomic # 8 Polarization: -31.15 SS G_CDS: -0.10 Total: -31.25 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -65.43 2.79 -62.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733874940.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.427 kcal (2) G-P(sol) polarization free energy of solvation -65.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds