Wall clock time and date at job start Sat Apr 11 2020 07:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29870 * 124.83378 * 2 1 4 4 C 1.36122 * 108.76289 * 179.97438 * 3 2 1 5 5 C 1.39271 * 133.76312 * 180.02562 * 4 3 2 6 6 C 1.39198 * 119.46514 * 179.97438 * 5 4 3 7 7 C 1.47718 * 119.94807 * 180.02562 * 6 5 4 8 8 O 1.21565 * 119.99847 * 140.58009 * 7 6 5 9 9 N 1.34779 * 120.00263 * 320.57428 * 7 6 5 10 10 C 1.46505 * 119.99923 * 5.10882 * 9 7 6 11 11 C 1.46495 * 119.99990 * 185.10719 * 9 7 6 12 12 C 1.53001 * 109.47067 * 90.00317 * 11 9 7 13 13 C 1.52998 * 109.46933 * 299.99748 * 12 11 9 14 14 C 1.52997 * 109.47542 * 59.99792 * 12 11 9 15 15 C 1.53005 * 109.47037 * 179.97438 * 12 11 9 16 16 N 1.46499 * 109.46713 * 179.97438 * 15 12 11 17 17 C 1.36941 * 119.99763 * 179.97438 * 16 15 12 18 18 H 1.08006 * 119.99941 * 0.02562 * 17 16 15 19 19 C 1.38813 * 120.00338 * 179.97438 * 17 16 15 20 20 N 1.31618 * 119.99678 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00172 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47135 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46675 * 120.00085 * 21 19 17 24 24 H 1.48501 * 109.47255 * 240.00130 * 21 19 17 25 25 C 1.40043 * 120.09590 * 0.02562 * 6 5 4 26 26 C 1.36524 * 120.47561 * 359.97438 * 25 6 5 27 27 C 1.38893 * 120.19145 * 359.97438 * 26 25 6 28 28 O 1.34239 * 124.83018 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.47239 * 89.99431 * 1 2 3 30 30 H 1.08994 * 109.47098 * 209.99559 * 1 2 3 31 31 H 1.09004 * 109.46842 * 330.00005 * 1 2 3 32 32 H 1.07999 * 120.26685 * 359.97014 * 5 4 3 33 33 H 1.08996 * 109.46705 * 84.92361 * 10 9 7 34 34 H 1.09000 * 109.46898 * 204.92674 * 10 9 7 35 35 H 1.09003 * 109.46791 * 324.92719 * 10 9 7 36 36 H 1.09008 * 109.47056 * 209.99992 * 11 9 7 37 37 H 1.09003 * 109.47363 * 330.00026 * 11 9 7 38 38 H 1.08998 * 109.47375 * 59.99961 * 13 12 11 39 39 H 1.09003 * 109.47104 * 180.02562 * 13 12 11 40 40 H 1.08998 * 109.47312 * 299.99614 * 13 12 11 41 41 H 1.09004 * 109.47368 * 59.99669 * 14 12 11 42 42 H 1.08992 * 109.47668 * 179.97438 * 14 12 11 43 43 H 1.08998 * 109.47136 * 300.00346 * 14 12 11 44 44 H 1.08996 * 109.46771 * 299.99776 * 15 12 11 45 45 H 1.08998 * 109.46907 * 59.99821 * 15 12 11 46 46 H 0.96998 * 120.00702 * 0.02562 * 16 15 12 47 47 H 0.97003 * 120.00255 * 179.97438 * 20 19 17 48 48 H 1.08000 * 119.76333 * 180.27483 * 25 6 5 49 49 H 1.08006 * 119.90322 * 180.02562 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2489 1.0660 0.0000 4 6 3.5569 0.6892 0.0006 5 6 4.7610 1.3890 0.0013 6 6 5.9620 0.6853 0.0023 7 6 7.2453 1.4168 0.0036 8 8 8.1755 1.0111 0.6730 9 7 7.3851 2.5339 -0.7373 10 6 6.2333 3.0856 -1.4552 11 6 8.6887 3.1966 -0.8247 12 6 9.4742 2.6228 -2.0057 13 6 9.6785 1.1205 -1.8005 14 6 8.6940 2.8592 -3.3004 15 6 10.8355 3.3153 -2.0974 16 7 11.5878 2.7654 -3.2278 17 6 12.8430 3.2355 -3.5084 18 1 13.2785 4.0113 -2.8960 19 6 13.5562 2.7142 -4.5791 20 7 13.0258 1.7684 -5.3250 21 14 15.2682 3.3560 -4.9622 22 1 15.6323 4.4104 -3.9821 23 1 16.2455 2.2413 -4.8753 24 1 15.2879 3.9259 -6.3333 25 6 5.9553 -0.7151 0.0020 26 6 4.7754 -1.4019 0.0013 27 6 3.5678 -0.7158 0.0014 28 8 2.2738 -1.1019 0.0005 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5137 31 1 -0.3633 0.8900 0.5139 32 1 4.7629 2.4690 0.0010 33 1 5.6601 3.7260 -0.7848 34 1 6.5818 3.6702 -2.3066 35 1 5.6010 2.2709 -1.8082 36 1 8.5431 4.2670 -0.9709 37 1 9.2445 3.0281 0.0976 38 1 8.7086 0.6274 -1.7354 39 1 10.2386 0.7117 -2.6416 40 1 10.2344 0.9520 -0.8782 41 1 8.5484 3.9296 -3.4466 42 1 9.2538 2.4509 -4.1417 43 1 7.7241 2.3662 -3.2353 44 1 10.6895 4.3855 -2.2438 45 1 11.3915 3.1472 -1.1751 46 1 11.1966 2.0689 -3.7780 47 1 13.5239 1.4043 -6.0735 48 1 6.8903 -1.2557 0.0073 49 1 4.7810 -2.4820 0.0016 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755281429.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:36:10 Heat of formation + Delta-G solvation = 2.511481 kcal Electronic energy + Delta-G solvation = -30308.652892 eV Core-core repulsion = 26237.226496 eV Total energy + Delta-G solvation = -4071.426395 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -44.39569 -41.62486 -39.28875 -38.30072 -36.55013 -35.98504 -34.96025 -32.71401 -32.45442 -31.75939 -29.27093 -28.92054 -28.14812 -27.33146 -27.00979 -25.06110 -24.10281 -23.49337 -22.68108 -21.24946 -19.90329 -19.26716 -19.11752 -18.32796 -18.01164 -17.85290 -17.01876 -16.96267 -16.51529 -16.02564 -15.59715 -15.54437 -15.24636 -15.11306 -14.78740 -14.57469 -14.37983 -14.18097 -14.06689 -13.94538 -13.87725 -13.75305 -13.55212 -13.42488 -13.11298 -12.94065 -12.84970 -12.68005 -12.51304 -12.42505 -12.36131 -12.24966 -12.05788 -11.66922 -11.65330 -11.63186 -11.52451 -10.98758 -10.93430 -9.96945 -9.68357 -9.58854 -8.95848 -7.93736 -5.21172 -0.44046 -0.33568 1.25643 1.37019 1.46734 1.47878 1.57718 1.58995 1.91524 2.47233 2.57060 2.73075 3.30118 3.38299 3.39954 3.80682 3.83053 3.87790 3.95593 3.96791 4.03026 4.10537 4.24632 4.30718 4.45699 4.51667 4.53295 4.60659 4.61859 4.64552 4.75559 4.80409 4.82477 4.87403 4.91768 4.92352 4.94886 5.01363 5.07682 5.15631 5.17227 5.18643 5.23934 5.34920 5.44678 5.49858 5.51068 5.54770 6.28892 6.29202 6.45944 7.04577 7.35493 8.13014 8.36501 9.30271 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.026048 B = 0.002043 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.669376 B =13704.739861 C =13810.924519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.254 3.746 3 N -0.505 5.505 4 C -0.001 4.001 5 C -0.030 4.030 6 C -0.132 4.132 7 C 0.559 3.441 8 O -0.562 6.562 9 N -0.597 5.597 10 C 0.059 3.941 11 C 0.134 3.866 12 C -0.077 4.077 13 C -0.112 4.112 14 C -0.128 4.128 15 C 0.163 3.837 16 N -0.739 5.739 17 C -0.241 4.241 18 H 0.075 0.925 19 C -0.078 4.078 20 N -0.970 5.970 21 Si 0.973 3.027 22 H -0.266 1.266 23 H -0.296 1.296 24 H -0.292 1.292 25 C -0.053 4.053 26 C -0.087 4.087 27 C 0.010 3.990 28 O -0.218 6.218 29 H 0.119 0.881 30 H 0.114 0.886 31 H 0.118 0.882 32 H 0.164 0.836 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.108 0.892 37 H 0.073 0.927 38 H 0.049 0.951 39 H 0.031 0.969 40 H 0.039 0.961 41 H 0.066 0.934 42 H 0.032 0.968 43 H 0.068 0.932 44 H 0.031 0.969 45 H 0.012 0.988 46 H 0.376 0.624 47 H 0.250 0.750 48 H 0.151 0.849 49 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.704 -2.442 11.819 32.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.044 3.956 3 N -0.235 5.235 4 C -0.112 4.112 5 C -0.049 4.049 6 C -0.136 4.136 7 C 0.348 3.652 8 O -0.442 6.442 9 N -0.327 5.327 10 C -0.082 4.082 11 C 0.011 3.989 12 C -0.078 4.078 13 C -0.170 4.170 14 C -0.185 4.185 15 C 0.036 3.964 16 N -0.383 5.383 17 C -0.373 4.373 18 H 0.093 0.907 19 C -0.270 4.270 20 N -0.622 5.622 21 Si 0.803 3.197 22 H -0.191 1.191 23 H -0.223 1.223 24 H -0.219 1.219 25 C -0.072 4.072 26 C -0.105 4.105 27 C -0.041 4.041 28 O -0.110 6.110 29 H 0.138 0.862 30 H 0.133 0.867 31 H 0.136 0.864 32 H 0.181 0.819 33 H 0.101 0.899 34 H 0.112 0.888 35 H 0.095 0.905 36 H 0.126 0.874 37 H 0.091 0.909 38 H 0.068 0.932 39 H 0.050 0.950 40 H 0.058 0.942 41 H 0.085 0.915 42 H 0.051 0.949 43 H 0.087 0.913 44 H 0.048 0.952 45 H 0.030 0.970 46 H 0.209 0.791 47 H 0.059 0.941 48 H 0.169 0.831 49 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -30.299 -1.877 12.208 32.720 hybrid contribution 1.570 -0.915 -0.669 1.936 sum -28.729 -2.792 11.538 31.085 Atomic orbital electron populations 1.20796 0.77070 1.07273 1.06992 1.27636 0.98303 0.77277 0.92434 1.70673 1.00584 1.29946 1.22332 1.19925 0.92609 0.91725 1.06898 1.20869 0.87226 1.01503 0.95332 1.19713 0.92375 0.94683 1.06842 1.18328 0.87091 0.80480 0.79259 1.90810 1.42308 1.67730 1.43310 1.47697 1.11269 1.26003 1.47770 1.22535 0.87744 1.00041 0.97920 1.21457 0.82604 0.97259 0.97579 1.21005 0.94776 0.95482 0.96541 1.21575 0.99927 0.95501 0.99966 1.21800 0.99264 1.01879 0.95542 1.20736 0.90460 0.95640 0.89567 1.42584 1.15997 1.46075 1.33595 1.19697 0.93041 1.15325 1.09196 0.90699 1.25551 1.02619 0.99981 0.98872 1.69828 1.39181 1.31905 1.21252 0.85068 0.79814 0.77365 0.77496 1.19052 1.22319 1.21936 1.20875 0.98586 0.92256 0.95479 1.19765 0.86075 1.01883 1.02826 1.20758 0.84526 0.94657 1.04189 1.84503 1.15065 1.36995 1.74426 0.86245 0.86702 0.86383 0.81881 0.89858 0.88834 0.90476 0.87384 0.90859 0.93203 0.94996 0.94211 0.91513 0.94929 0.91279 0.95152 0.97048 0.79075 0.94116 0.83094 0.81575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.21 10.51 71.24 0.75 0.54 16 2 C 0.25 3.77 8.23 88.40 0.73 4.50 16 3 N -0.51 -10.13 11.34 -296.35 -3.36 -13.49 16 4 C 0.00 -0.02 7.23 39.28 0.28 0.26 16 5 C -0.03 -0.60 7.62 22.75 0.17 -0.43 16 6 C -0.13 -2.96 5.24 -20.10 -0.11 -3.06 16 7 C 0.56 14.99 5.58 86.75 0.48 15.48 16 8 O -0.56 -19.35 15.08 -3.92 -0.06 -19.41 16 9 N -0.60 -13.57 2.40 -850.32 -2.04 -15.61 16 10 C 0.06 0.91 7.62 127.77 0.97 1.88 16 11 C 0.13 3.48 4.59 86.38 0.40 3.88 16 12 C -0.08 -2.51 0.60 -52.18 -0.03 -2.54 16 13 C -0.11 -4.16 7.05 71.98 0.51 -3.65 16 14 C -0.13 -3.87 7.06 71.98 0.51 -3.36 16 15 C 0.16 6.65 5.15 86.38 0.44 7.10 16 16 N -0.74 -38.35 5.00 -343.44 -1.72 -40.06 16 17 C -0.24 -13.75 9.99 84.03 0.84 -12.91 16 18 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 19 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 20 N -0.97 -60.65 13.06 21.65 0.28 -60.37 16 21 Si 0.97 47.21 29.55 68.60 2.03 49.24 16 22 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 23 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 24 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 25 C -0.05 -1.09 9.55 22.31 0.21 -0.88 16 26 C -0.09 -1.55 9.99 22.03 0.22 -1.33 16 27 C 0.01 0.19 7.43 22.98 0.17 0.36 16 28 O -0.22 -3.91 10.77 -9.29 -0.10 -4.01 16 29 H 0.12 0.00 8.14 -2.39 -0.02 -0.02 16 30 H 0.11 -0.07 8.14 -2.39 -0.02 -0.09 16 31 H 0.12 0.16 8.14 -2.38 -0.02 0.14 16 32 H 0.16 2.62 5.28 -2.91 -0.02 2.60 16 33 H 0.08 0.92 6.86 -2.39 -0.02 0.90 16 34 H 0.09 1.30 6.28 -2.39 -0.01 1.28 16 35 H 0.08 1.18 5.86 -2.39 -0.01 1.16 16 36 H 0.11 2.21 8.07 -2.38 -0.02 2.19 16 37 H 0.07 2.16 7.36 -2.39 -0.02 2.15 16 38 H 0.05 1.68 6.22 -2.39 -0.01 1.67 16 39 H 0.03 1.35 6.86 -2.39 -0.02 1.33 16 40 H 0.04 1.58 7.85 -2.39 -0.02 1.56 16 41 H 0.07 1.80 8.07 -2.38 -0.02 1.78 16 42 H 0.03 1.22 6.86 -2.39 -0.02 1.20 16 43 H 0.07 1.75 6.07 -2.39 -0.01 1.74 16 44 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 46 H 0.38 20.76 5.36 -92.71 -0.50 20.26 16 47 H 0.25 15.11 8.31 -92.71 -0.77 14.33 16 48 H 0.15 3.04 8.05 -2.91 -0.02 3.02 16 49 H 0.17 2.02 8.06 -2.91 -0.02 2.00 16 Total: -1.00 -78.10 387.40 2.54 -75.56 By element: Atomic # 1 Polarization: 25.96 SS G_CDS: 0.49 Total: 26.45 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: 7.02 Total: 1.71 kcal Atomic # 7 Polarization: -122.70 SS G_CDS: -6.84 Total: -129.53 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -0.16 Total: -23.42 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.03 Total: 49.24 kcal Total: -78.10 2.54 -75.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755281429.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.067 kcal (2) G-P(sol) polarization free energy of solvation -78.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds