Wall clock time and date at job start Sat Apr 11 2020 07:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30088 * 124.87979 * 2 1 4 4 C 1.35582 * 108.83990 * 180.02562 * 3 2 1 5 5 C 1.40291 * 106.62060 * 0.19134 * 4 3 2 6 6 C 1.38588 * 119.92078 * 180.32336 * 5 4 3 7 7 C 1.38208 * 120.22001 * 359.76617 * 6 5 4 8 8 C 1.38185 * 120.67230 * 0.02562 * 7 6 5 9 9 C 1.39362 * 120.24512 * 0.02562 * 8 7 6 10 10 C 1.47433 * 120.30317 * 179.97438 * 9 8 7 11 11 O 1.21598 * 120.00022 * 179.97438 * 10 9 8 12 12 N 1.34771 * 119.99504 * 0.02562 * 10 9 8 13 13 C 1.46505 * 119.99622 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47212 * 179.97438 * 13 12 10 15 15 C 1.52992 * 109.47482 * 179.97438 * 14 13 12 16 16 H 1.09001 * 109.47563 * 305.00337 * 15 14 13 17 17 N 1.46502 * 109.47005 * 64.99872 * 15 14 13 18 18 C 1.36941 * 120.00103 * 205.00019 * 17 15 14 19 19 H 1.08000 * 119.99734 * 0.02562 * 18 17 15 20 20 C 1.38812 * 119.99814 * 180.02562 * 18 17 15 21 21 N 1.31613 * 120.00446 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99795 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47202 * 59.99527 * 22 20 18 24 24 H 1.48499 * 109.46834 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.46977 * 299.99495 * 22 20 18 26 26 C 1.52997 * 109.47448 * 184.99813 * 15 14 13 27 27 C 1.53005 * 109.46871 * 60.00378 * 26 15 14 28 28 C 1.53008 * 109.47255 * 179.97438 * 26 15 14 29 29 O 1.34143 * 124.88001 * 180.53516 * 2 1 3 30 30 H 1.09004 * 109.46844 * 89.99306 * 1 2 3 31 31 H 1.08991 * 109.47311 * 209.99770 * 1 2 3 32 32 H 1.09004 * 109.46945 * 329.99912 * 1 2 3 33 33 H 1.08001 * 119.88793 * 179.74475 * 6 5 4 34 34 H 1.08005 * 119.66566 * 179.97438 * 7 6 5 35 35 H 1.07998 * 119.88025 * 179.97438 * 8 7 6 36 36 H 0.96996 * 120.00772 * 359.97438 * 12 10 9 37 37 H 1.09002 * 109.47068 * 299.99729 * 13 12 10 38 38 H 1.09001 * 109.47372 * 59.99816 * 13 12 10 39 39 H 1.09002 * 109.47153 * 300.00008 * 14 13 12 40 40 H 1.08998 * 109.47533 * 59.99637 * 14 13 12 41 41 H 0.97003 * 120.00235 * 25.00789 * 17 15 14 42 42 H 0.96996 * 120.00501 * 180.02562 * 21 20 18 43 43 H 1.09000 * 109.47346 * 300.00002 * 26 15 14 44 44 H 1.09000 * 109.47431 * 60.00240 * 27 26 15 45 45 H 1.09001 * 109.47099 * 179.97438 * 27 26 15 46 46 H 1.08996 * 109.47038 * 299.99544 * 27 26 15 47 47 H 1.08998 * 109.46504 * 60.00633 * 28 26 15 48 48 H 1.09001 * 109.47171 * 180.02562 * 28 26 15 49 49 H 1.09000 * 109.47044 * 300.00308 * 28 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2509 1.0672 0.0000 4 6 3.5540 0.6926 -0.0006 5 6 3.5682 -0.7103 -0.0054 6 6 4.7763 -1.3894 -0.0003 7 6 5.9678 -0.6892 0.0046 8 6 5.9735 0.6927 0.0052 9 6 4.7724 1.3995 0.0012 10 6 4.7769 2.8738 0.0023 11 8 3.7257 3.4851 -0.0017 12 7 5.9462 3.5440 0.0066 13 6 5.9507 5.0091 0.0083 14 6 7.3947 5.5146 0.0140 15 6 7.3995 7.0445 0.0151 16 1 6.8143 7.4104 -0.8286 17 7 6.8127 7.5338 1.2651 18 6 6.2407 8.7771 1.3124 19 1 6.2219 9.3969 0.4281 20 6 5.6852 9.2409 2.4970 21 7 5.7076 8.4855 3.5745 22 14 4.9043 10.9367 2.5614 23 1 3.7836 11.0028 1.5894 24 1 4.3877 11.1920 3.9300 25 1 5.9204 11.9629 2.2158 26 6 8.8385 7.5502 -0.1050 27 6 9.4513 7.0393 -1.4105 28 6 8.8432 9.0803 -0.1045 29 8 2.2741 -1.1004 -0.0103 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3633 -0.8899 0.5137 32 1 -0.3633 0.8900 0.5139 33 1 4.7866 -2.4693 0.0001 34 1 6.9042 -1.2275 0.0090 35 1 6.9121 1.2269 0.0095 36 1 6.7847 3.0565 0.0094 37 1 5.4408 5.3750 -0.8829 38 1 5.4352 5.3730 0.8971 39 1 7.9043 5.1487 0.9054 40 1 7.9106 5.1507 -0.8745 41 1 6.8293 6.9771 2.0593 42 1 5.3191 8.8093 4.4021 43 1 9.4237 7.1845 0.7388 44 1 8.8662 7.4051 -2.2542 45 1 10.4764 7.3999 -1.4963 46 1 9.4480 5.9493 -1.4113 47 1 8.4065 9.4446 0.8254 48 1 9.8683 9.4405 -0.1905 49 1 8.2580 9.4456 -0.9485 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755552956.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:36:16 Heat of formation + Delta-G solvation = 6.264443 kcal Electronic energy + Delta-G solvation = -29659.451031 eV Core-core repulsion = 25588.187376 eV Total energy + Delta-G solvation = -4071.263655 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -43.52223 -39.74764 -37.89919 -37.31053 -35.12912 -34.56561 -33.01235 -31.98699 -31.73485 -30.66406 -29.28329 -28.41208 -26.36370 -25.38386 -23.90951 -23.29510 -22.56521 -22.05310 -21.06388 -20.42841 -19.17902 -18.33662 -17.83163 -17.12489 -17.08925 -16.70913 -15.60045 -15.46535 -15.31239 -14.80716 -14.23612 -14.08249 -13.96148 -13.92427 -13.78947 -13.55781 -13.47582 -13.16252 -13.01965 -12.80691 -12.44934 -12.37355 -12.21499 -11.98193 -11.63743 -11.59223 -11.50952 -11.14923 -10.86333 -10.74151 -10.67771 -10.54630 -10.39995 -10.23257 -10.02786 -9.92906 -9.57757 -9.40563 -9.17484 -8.83299 -8.77251 -8.62729 -6.88434 -5.69940 -2.97480 0.10113 0.78811 2.17696 2.18391 2.79155 3.24752 3.48879 3.53683 3.54253 3.54284 3.67201 4.23166 4.42881 4.59725 4.65142 4.68436 4.74570 4.97470 5.01300 5.10052 5.25140 5.31141 5.40615 5.47440 5.51440 5.57668 5.63511 5.74133 5.74793 5.82594 5.84803 5.94723 5.95245 6.05445 6.19750 6.21314 6.27640 6.30339 6.42497 6.47357 6.59624 6.70574 6.74087 6.78639 6.86392 7.15986 7.36596 7.43101 7.69078 7.77339 8.43737 8.48243 9.59637 10.16431 10.51150 11.52521 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011881 B = 0.002476 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.230900 B =11306.751708 C =13072.380483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.245 3.755 3 N -0.451 5.451 4 C 0.075 3.925 5 C -0.004 4.004 6 C -0.070 4.070 7 C -0.103 4.103 8 C -0.086 4.086 9 C -0.072 4.072 10 C 0.545 3.455 11 O -0.503 6.503 12 N -0.725 5.725 13 C 0.124 3.876 14 C -0.136 4.136 15 C 0.186 3.814 16 H 0.049 0.951 17 N -0.721 5.721 18 C -0.232 4.232 19 H 0.071 0.929 20 C -0.013 4.013 21 N -0.932 5.932 22 Si 0.901 3.099 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.287 1.287 26 C -0.111 4.111 27 C -0.147 4.147 28 C -0.140 4.140 29 O -0.215 6.215 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.109 0.891 33 H 0.139 0.861 34 H 0.147 0.853 35 H 0.142 0.858 36 H 0.393 0.607 37 H 0.064 0.936 38 H 0.086 0.914 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.383 0.617 42 H 0.254 0.746 43 H 0.059 0.941 44 H 0.048 0.952 45 H 0.042 0.958 46 H 0.049 0.951 47 H 0.086 0.914 48 H 0.028 0.972 49 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.673 -23.240 -9.650 25.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.035 3.965 3 N -0.180 5.180 4 C -0.039 4.039 5 C -0.054 4.054 6 C -0.089 4.089 7 C -0.121 4.121 8 C -0.106 4.106 9 C -0.076 4.076 10 C 0.331 3.669 11 O -0.377 6.377 12 N -0.377 5.377 13 C 0.001 3.999 14 C -0.174 4.174 15 C 0.075 3.925 16 H 0.067 0.933 17 N -0.362 5.362 18 C -0.363 4.363 19 H 0.089 0.911 20 C -0.209 4.209 21 N -0.580 5.580 22 Si 0.732 3.268 23 H -0.213 1.213 24 H -0.218 1.218 25 H -0.214 1.214 26 C -0.132 4.132 27 C -0.204 4.204 28 C -0.198 4.198 29 O -0.108 6.108 30 H 0.118 0.882 31 H 0.111 0.889 32 H 0.127 0.873 33 H 0.157 0.843 34 H 0.165 0.835 35 H 0.160 0.840 36 H 0.227 0.773 37 H 0.082 0.918 38 H 0.104 0.896 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.217 0.783 42 H 0.064 0.936 43 H 0.078 0.922 44 H 0.067 0.933 45 H 0.061 0.939 46 H 0.068 0.932 47 H 0.105 0.895 48 H 0.047 0.953 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -0.437 -21.959 -9.664 23.995 hybrid contribution 0.337 -0.168 0.386 0.539 sum -0.101 -22.126 -9.279 23.993 Atomic orbital electron populations 1.20448 0.80600 1.05771 1.05277 1.26826 0.96942 0.78056 0.94724 1.70837 1.00634 1.27873 1.18617 1.19560 0.91691 0.90517 1.02165 1.20248 0.84221 0.94198 1.06750 1.20017 0.87291 1.00474 1.01129 1.20929 0.97348 0.93715 1.00106 1.21317 0.96847 0.94473 0.97972 1.19394 0.90546 0.93868 1.03841 1.17923 0.84502 0.86297 0.78220 1.90892 1.30868 1.68890 1.47062 1.46024 1.07622 1.08508 1.75577 1.21467 0.97994 0.76765 1.03640 1.22132 0.95008 0.98547 1.01737 1.20180 0.91869 0.89304 0.91172 0.93300 1.42434 1.68306 1.17808 1.07611 1.19142 1.29054 0.92555 0.95532 0.91109 1.24702 1.01838 0.98269 0.96061 1.69634 1.50775 1.36830 1.00777 0.86355 0.79322 0.84502 0.76574 1.21303 1.21839 1.21369 1.21778 0.98742 0.96737 0.95985 1.21938 0.99809 1.00192 0.98506 1.21833 0.98974 0.95243 1.03717 1.84486 1.15034 1.36492 1.74750 0.88222 0.88878 0.87288 0.84324 0.83491 0.84020 0.77258 0.91768 0.89621 0.91637 0.91541 0.78305 0.93570 0.92208 0.93292 0.93857 0.93215 0.89476 0.95254 0.94136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.42 10.51 36.01 0.38 -0.04 16 2 C 0.25 2.93 8.24 -13.02 -0.11 2.82 16 3 N -0.45 -7.30 10.62 -8.48 -0.09 -7.39 16 4 C 0.07 1.13 6.84 -84.44 -0.58 0.56 16 5 C 0.00 -0.05 7.42 -38.68 -0.29 -0.33 16 6 C -0.07 -0.60 10.05 -39.46 -0.40 -0.99 16 7 C -0.10 -0.74 10.00 -39.61 -0.40 -1.14 16 8 C -0.09 -0.80 9.53 -39.18 -0.37 -1.17 16 9 C -0.07 -1.02 5.90 -104.74 -0.62 -1.63 16 10 C 0.55 9.32 7.76 -12.52 -0.10 9.22 16 11 O -0.50 -11.06 16.07 5.28 0.08 -10.98 16 12 N -0.72 -10.38 5.51 -61.38 -0.34 -10.72 16 13 C 0.12 2.12 5.56 -4.04 -0.02 2.10 16 14 C -0.14 -2.06 4.65 -26.74 -0.12 -2.18 16 15 C 0.19 3.47 2.02 -67.93 -0.14 3.33 16 16 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 17 N -0.72 -17.15 4.45 -53.43 -0.24 -17.39 16 18 C -0.23 -6.20 7.57 -15.06 -0.11 -6.32 16 19 H 0.07 1.86 7.40 -52.49 -0.39 1.47 16 20 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 21 N -0.93 -28.11 13.06 55.49 0.72 -27.39 16 22 Si 0.90 22.63 29.55 -169.99 -5.02 17.61 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 C -0.11 -1.88 2.69 -90.61 -0.24 -2.13 16 27 C -0.15 -1.99 8.85 37.16 0.33 -1.66 16 28 C -0.14 -2.59 8.26 37.16 0.31 -2.29 16 29 O -0.22 -2.54 10.77 3.72 0.04 -2.50 16 30 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 34 H 0.15 0.52 8.06 -52.48 -0.42 0.10 16 35 H 0.14 0.88 6.39 -52.49 -0.34 0.55 16 36 H 0.39 4.07 6.50 -40.82 -0.27 3.80 16 37 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.09 1.83 7.75 -51.93 -0.40 1.43 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.07 0.83 6.17 -51.93 -0.32 0.51 16 41 H 0.38 9.86 7.80 -40.82 -0.32 9.54 16 42 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 43 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 44 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.05 0.59 6.32 -51.93 -0.33 0.26 16 47 H 0.09 1.92 6.01 -51.93 -0.31 1.61 16 48 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 49 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 400.99 15.07 6.04 6.04 Total: -1.00 -36.50 400.99 -8.67 -45.17 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -7.30 Total: 9.84 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: -2.58 Total: -2.30 kcal Atomic # 7 Polarization: -62.94 SS G_CDS: 0.06 Total: -62.89 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: 0.12 Total: -13.47 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -36.50 -8.67 -45.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755552956.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.435 kcal (2) G-P(sol) polarization free energy of solvation -36.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds