Wall clock time and date at job start Sat Apr 11 2020 07:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47214 * 2 1 4 4 C 1.52998 * 109.47276 * 119.99911 * 2 1 3 5 5 N 1.46506 * 109.47280 * 176.88683 * 4 2 1 6 6 C 1.46496 * 119.99912 * 294.68490 * 5 4 2 7 7 C 1.50701 * 109.46738 * 274.99904 * 6 5 4 8 8 H 1.08005 * 120.00497 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99874 * 180.02562 * 7 6 5 10 10 N 1.31519 * 120.00048 * 179.97438 * 9 7 6 11 11 Si 1.86803 * 119.99947 * 359.97438 * 9 7 6 12 12 H 1.48507 * 109.47017 * 89.99933 * 11 9 7 13 13 H 1.48495 * 109.47215 * 209.99694 * 11 9 7 14 14 H 1.48498 * 109.47132 * 330.00034 * 11 9 7 15 15 S 1.65600 * 119.99735 * 114.68048 * 5 4 2 16 16 O 1.42104 * 104.27170 * 147.98981 * 15 5 4 17 17 O 1.42095 * 104.28023 * 20.13524 * 15 5 4 18 18 C 1.81397 * 104.45010 * 264.05691 * 15 5 4 19 19 C 1.53000 * 109.47038 * 188.01881 * 18 15 5 20 20 H 1.09003 * 110.34877 * 57.87882 * 19 18 15 21 21 C 1.55002 * 110.30413 * 180.02562 * 19 18 15 22 22 C 1.55436 * 101.01574 * 155.06334 * 21 19 18 23 23 C 1.53856 * 102.04454 * 326.32739 * 22 21 19 24 24 C 1.53190 * 114.62198 * 151.44075 * 23 22 21 25 25 C 1.53885 * 86.91547 * 90.96103 * 24 23 22 26 26 C 1.53213 * 114.59254 * 250.68101 * 23 22 21 27 27 O 1.42623 * 108.27418 * 21.02639 * 23 22 21 28 28 H 1.08999 * 109.47055 * 299.99848 * 1 2 3 29 29 H 1.08991 * 109.46975 * 60.00544 * 1 2 3 30 30 H 1.09005 * 109.46962 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47498 * 240.00090 * 2 1 3 32 32 H 1.09002 * 109.47316 * 69.18602 * 3 2 1 33 33 H 1.08998 * 109.47422 * 189.19588 * 3 2 1 34 34 H 1.09002 * 109.46656 * 309.19046 * 3 2 1 35 35 H 1.08997 * 109.47414 * 56.88251 * 4 2 1 36 36 H 1.09008 * 109.47211 * 296.88737 * 4 2 1 37 37 H 1.09003 * 109.47297 * 34.99708 * 6 5 4 38 38 H 1.09000 * 109.47474 * 155.00122 * 6 5 4 39 39 H 0.97006 * 119.99639 * 179.97438 * 10 9 7 40 40 H 1.09004 * 109.46899 * 68.02250 * 18 15 5 41 41 H 1.08995 * 109.47237 * 308.02072 * 18 15 5 42 42 H 1.08996 * 111.11518 * 273.00267 * 21 19 18 43 43 H 1.09003 * 111.10937 * 37.12787 * 21 19 18 44 44 H 1.08996 * 110.91799 * 84.51027 * 22 21 19 45 45 H 1.08998 * 110.91664 * 208.14213 * 22 21 19 46 46 H 1.08999 * 113.64260 * 205.46732 * 24 23 22 47 47 H 1.09005 * 113.64090 * 336.45733 * 24 23 22 48 48 H 1.08999 * 113.60538 * 270.42378 * 25 24 23 49 49 H 1.09006 * 113.60033 * 139.57572 * 25 24 23 50 50 H 1.08996 * 113.63864 * 23.51397 * 26 23 22 51 51 H 1.08991 * 113.63999 * 154.50488 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5032 -0.7865 1.2123 6 6 4.1754 -1.5699 0.1728 7 6 4.2662 -3.0096 0.6087 8 1 3.8631 -3.3111 1.5643 9 6 4.8640 -3.9421 -0.2124 10 7 4.9437 -5.1985 0.1683 11 14 5.5605 -3.4210 -1.8654 12 1 6.9813 -3.0217 -1.7002 13 1 5.4731 -4.5556 -2.8194 14 1 4.7812 -2.2713 -2.3908 15 16 4.3970 0.0253 2.3456 16 8 5.5536 -0.7811 2.5229 17 8 3.4882 0.2481 3.4150 18 6 4.8310 1.5926 1.5420 19 6 5.8292 2.3546 2.4160 20 1 6.7196 1.7503 2.5896 21 6 6.2132 3.6990 1.7469 22 6 6.6350 4.5376 2.9859 23 6 5.6867 4.0032 4.0732 24 6 6.2416 4.0819 5.4989 25 6 5.5821 5.4693 5.5900 26 6 4.5975 4.9883 4.5097 27 8 5.2210 2.7174 3.6680 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8169 1.9068 0.9606 33 1 3.1176 1.4469 -0.1642 34 1 1.5489 2.0015 -0.7965 35 1 1.6318 -1.7315 1.2777 36 1 1.7230 -0.1761 2.1384 37 1 3.6067 -1.5064 -0.7549 38 1 5.1785 -1.1751 0.0119 39 1 5.3639 -5.8546 -0.4096 40 1 3.9316 2.1939 1.4088 41 1 5.2800 1.3902 0.5696 42 1 7.0475 3.5703 1.0575 43 1 5.3558 4.1461 1.2437 44 1 7.6754 4.3468 3.2490 45 1 6.4676 5.6004 2.8117 46 1 5.8089 3.3469 6.1776 47 1 7.3303 4.1117 5.5432 48 1 6.2288 6.2824 5.2603 49 1 5.1111 5.6662 6.5531 50 1 4.3671 5.7454 3.7601 51 1 3.7076 4.5054 4.9131 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413294407.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:36:19 Heat of formation + Delta-G solvation = -100.517615 kcal Electronic energy + Delta-G solvation = -30710.944520 eV Core-core repulsion = 26738.201648 eV Total energy + Delta-G solvation = -3972.742872 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.181 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.70183 -37.28456 -36.94600 -36.42098 -35.21376 -33.74401 -32.62147 -32.08580 -30.83609 -28.02462 -27.10823 -25.99988 -25.56074 -24.88096 -22.90282 -22.20272 -21.51984 -19.73805 -19.18759 -18.08234 -17.18083 -17.02245 -16.87893 -16.24921 -15.91871 -15.53727 -15.26081 -14.85797 -14.63450 -14.17515 -14.06786 -13.80460 -13.77442 -13.28748 -12.73551 -12.66927 -12.49483 -12.41680 -12.39723 -12.19769 -12.04419 -12.02432 -11.83329 -11.71869 -11.50346 -11.37857 -11.35327 -11.22786 -11.20519 -11.12127 -10.86149 -10.68463 -10.67993 -10.54177 -10.46836 -10.26549 -10.18911 -9.93992 -9.58063 -9.47582 -8.55426 -8.00725 -6.03515 -4.01455 0.81466 3.26147 3.30602 3.31614 3.38477 3.42989 4.11803 4.25153 4.26518 4.40189 4.41358 4.50194 4.54937 4.71791 4.74788 4.84362 4.96144 5.09005 5.09710 5.16348 5.20559 5.28108 5.29930 5.40049 5.44189 5.46475 5.57381 5.58772 5.64530 5.66447 5.68502 5.74157 5.78177 5.84404 5.89735 5.95029 5.98425 6.02685 6.09178 6.20311 6.24377 6.36654 6.56369 6.62823 6.73275 6.89954 7.11905 7.42327 7.62033 8.54890 9.04413 9.55316 11.10392 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013478 B = 0.003731 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.970648 B = 7503.305979 C = 8343.208953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.117 4.117 3 C -0.159 4.159 4 C 0.126 3.874 5 N -0.979 5.979 6 C 0.226 3.774 7 C -0.523 4.523 8 H 0.079 0.921 9 C 0.072 3.928 10 N -0.896 5.896 11 Si 0.868 3.132 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.265 1.265 15 S 2.609 3.391 16 O -0.935 6.935 17 O -0.957 6.957 18 C -0.653 4.653 19 C 0.089 3.911 20 H 0.090 0.910 21 C -0.141 4.141 22 C -0.131 4.131 23 C 0.082 3.918 24 C -0.143 4.143 25 C -0.140 4.140 26 C -0.140 4.140 27 O -0.357 6.357 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.081 0.919 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.036 0.964 38 H 0.023 0.977 39 H 0.264 0.736 40 H 0.138 0.862 41 H 0.141 0.859 42 H 0.088 0.912 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.093 0.907 47 H 0.072 0.928 48 H 0.081 0.919 49 H 0.074 0.926 50 H 0.070 0.930 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.003 23.551 2.134 23.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.138 4.138 3 C -0.216 4.216 4 C 0.000 4.000 5 N -0.816 5.816 6 C 0.102 3.898 7 C -0.562 4.562 8 H 0.097 0.903 9 C -0.131 4.131 10 N -0.534 5.534 11 Si 0.695 3.305 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.190 1.190 15 S 2.699 3.301 16 O -0.925 6.925 17 O -0.947 6.947 18 C -0.779 4.779 19 C 0.030 3.970 20 H 0.108 0.892 21 C -0.179 4.179 22 C -0.169 4.169 23 C 0.042 3.958 24 C -0.181 4.181 25 C -0.177 4.177 26 C -0.177 4.177 27 O -0.276 6.276 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.099 0.901 36 H 0.104 0.896 37 H 0.053 0.947 38 H 0.041 0.959 39 H 0.074 0.926 40 H 0.156 0.844 41 H 0.159 0.841 42 H 0.107 0.893 43 H 0.102 0.898 44 H 0.101 0.899 45 H 0.104 0.896 46 H 0.111 0.889 47 H 0.091 0.909 48 H 0.099 0.901 49 H 0.093 0.907 50 H 0.089 0.911 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.856 22.932 3.032 23.147 hybrid contribution 0.568 0.582 -1.757 1.936 sum -0.288 23.514 1.275 23.550 Atomic orbital electron populations 1.21761 0.95018 1.02020 1.01319 1.21535 0.95584 0.96051 1.00586 1.22103 1.01314 0.96662 1.01534 1.21320 0.79722 1.01853 0.97132 1.57263 1.14289 1.61276 1.48799 1.19417 0.91275 0.92177 0.86885 1.21355 1.38421 0.90436 1.05968 0.90277 1.24871 0.95470 0.94832 0.97888 1.69900 1.44368 1.01766 1.37409 0.86985 0.80290 0.78702 0.84539 1.19895 1.20975 1.18957 1.05116 0.74758 0.75582 0.74642 1.93637 1.51181 1.63278 1.84396 1.93516 1.63409 1.86549 1.51222 1.31169 1.09437 1.24982 1.12283 1.22606 0.94130 0.96547 0.83723 0.89217 1.23277 1.02584 0.94252 0.97828 1.22879 0.99604 1.00715 0.93695 1.23201 0.94805 0.83670 0.94133 1.23361 1.00704 0.97580 0.96438 1.22695 0.98691 0.96717 0.99602 1.23312 0.98152 0.97718 0.98535 1.88491 1.67807 1.34383 1.36939 0.92761 0.92950 0.92277 0.90096 0.92737 0.92504 0.92648 0.90150 0.89649 0.94659 0.95870 0.92620 0.84365 0.84105 0.89346 0.89843 0.89864 0.89603 0.88869 0.90933 0.90083 0.90716 0.91104 0.88901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.18 37.16 0.34 -1.35 16 2 C -0.12 -1.66 2.92 -90.62 -0.26 -1.93 16 3 C -0.16 -1.93 7.96 37.16 0.30 -1.63 16 4 C 0.13 2.20 5.23 -4.04 -0.02 2.18 16 5 N -0.98 -19.75 2.34 -115.66 -0.27 -20.02 16 6 C 0.23 5.20 3.97 -5.20 -0.02 5.18 16 7 C -0.52 -14.93 9.92 -34.44 -0.34 -15.27 16 8 H 0.08 2.52 8.06 -52.48 -0.42 2.09 16 9 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 10 N -0.90 -27.72 13.96 55.43 0.77 -26.95 16 11 Si 0.87 20.84 27.47 -169.99 -4.67 16.17 16 12 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.26 -5.82 6.54 56.52 0.37 -5.45 16 15 S 2.61 51.87 5.14 -107.50 -0.55 51.32 16 16 O -0.93 -22.63 17.21 -57.54 -0.99 -23.62 16 17 O -0.96 -20.56 16.30 -57.54 -0.94 -21.50 16 18 C -0.65 -9.16 4.51 37.16 0.17 -9.00 16 19 C 0.09 1.19 3.45 -25.67 -0.09 1.10 16 20 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 21 C -0.14 -1.34 6.58 -24.38 -0.16 -1.50 16 22 C -0.13 -1.13 6.13 -24.99 -0.15 -1.28 16 23 C 0.08 0.90 1.65 -89.97 -0.15 0.75 16 24 C -0.14 -1.41 7.60 -26.17 -0.20 -1.61 16 25 C -0.14 -1.09 7.88 -25.81 -0.20 -1.30 16 26 C -0.14 -1.33 7.52 -26.16 -0.20 -1.52 16 27 O -0.36 -5.31 10.52 -35.23 -0.37 -5.68 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 1.23 6.78 -51.93 -0.35 0.88 16 32 H 0.05 0.63 7.79 -51.93 -0.40 0.23 16 33 H 0.06 0.68 5.73 -51.93 -0.30 0.38 16 34 H 0.05 0.57 8.12 -51.93 -0.42 0.15 16 35 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 36 H 0.09 1.42 6.64 -51.92 -0.34 1.08 16 37 H 0.04 0.77 5.73 -51.93 -0.30 0.47 16 38 H 0.02 0.52 7.20 -51.93 -0.37 0.15 16 39 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 40 H 0.14 1.68 6.02 -51.92 -0.31 1.37 16 41 H 0.14 1.67 8.09 -51.93 -0.42 1.25 16 42 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.08 0.73 8.05 -51.93 -0.42 0.31 16 44 H 0.08 0.64 8.00 -51.93 -0.42 0.23 16 45 H 0.09 0.57 7.85 -51.93 -0.41 0.17 16 46 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 47 H 0.07 0.62 8.00 -51.93 -0.42 0.21 16 48 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 50 H 0.07 0.57 8.00 -51.93 -0.42 0.16 16 51 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 403.45 15.07 6.08 6.08 Total: -1.00 -35.70 403.45 -11.14 -46.84 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -9.11 Total: 2.55 kcal Atomic # 6 Polarization: -24.11 SS G_CDS: -1.09 Total: -25.20 kcal Atomic # 7 Polarization: -47.47 SS G_CDS: 0.50 Total: -46.97 kcal Atomic # 8 Polarization: -48.49 SS G_CDS: -2.30 Total: -50.79 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.67 Total: 16.17 kcal Atomic # 16 Polarization: 51.87 SS G_CDS: -0.55 Total: 51.32 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.70 -11.14 -46.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413294407.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.678 kcal (2) G-P(sol) polarization free energy of solvation -35.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds