Wall clock time and date at job start Sat Apr 11 2020 07:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47214 * 2 1 4 4 C 1.52998 * 109.47276 * 119.99911 * 2 1 3 5 5 N 1.46506 * 109.47280 * 176.88683 * 4 2 1 6 6 C 1.46496 * 119.99912 * 294.68490 * 5 4 2 7 7 C 1.50701 * 109.46738 * 274.99904 * 6 5 4 8 8 H 1.08005 * 120.00497 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99874 * 180.02562 * 7 6 5 10 10 N 1.31519 * 120.00048 * 179.97438 * 9 7 6 11 11 Si 1.86803 * 119.99947 * 359.97438 * 9 7 6 12 12 H 1.48507 * 109.47017 * 89.99933 * 11 9 7 13 13 H 1.48495 * 109.47215 * 209.99694 * 11 9 7 14 14 H 1.48498 * 109.47132 * 330.00034 * 11 9 7 15 15 S 1.65600 * 119.99735 * 114.68048 * 5 4 2 16 16 O 1.42104 * 104.27170 * 147.98981 * 15 5 4 17 17 O 1.42095 * 104.28023 * 20.13524 * 15 5 4 18 18 C 1.81397 * 104.45010 * 264.05691 * 15 5 4 19 19 C 1.53000 * 109.47038 * 188.01881 * 18 15 5 20 20 H 1.09003 * 110.34877 * 57.87882 * 19 18 15 21 21 C 1.55002 * 110.30413 * 180.02562 * 19 18 15 22 22 C 1.55436 * 101.01574 * 155.06334 * 21 19 18 23 23 C 1.53856 * 102.04454 * 326.32739 * 22 21 19 24 24 C 1.53190 * 114.62198 * 151.44075 * 23 22 21 25 25 C 1.53885 * 86.91547 * 90.96103 * 24 23 22 26 26 C 1.53213 * 114.59254 * 250.68101 * 23 22 21 27 27 O 1.42623 * 108.27418 * 21.02639 * 23 22 21 28 28 H 1.08999 * 109.47055 * 299.99848 * 1 2 3 29 29 H 1.08991 * 109.46975 * 60.00544 * 1 2 3 30 30 H 1.09005 * 109.46962 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47498 * 240.00090 * 2 1 3 32 32 H 1.09002 * 109.47316 * 69.18602 * 3 2 1 33 33 H 1.08998 * 109.47422 * 189.19588 * 3 2 1 34 34 H 1.09002 * 109.46656 * 309.19046 * 3 2 1 35 35 H 1.08997 * 109.47414 * 56.88251 * 4 2 1 36 36 H 1.09008 * 109.47211 * 296.88737 * 4 2 1 37 37 H 1.09003 * 109.47297 * 34.99708 * 6 5 4 38 38 H 1.09000 * 109.47474 * 155.00122 * 6 5 4 39 39 H 0.97006 * 119.99639 * 179.97438 * 10 9 7 40 40 H 1.09004 * 109.46899 * 68.02250 * 18 15 5 41 41 H 1.08995 * 109.47237 * 308.02072 * 18 15 5 42 42 H 1.08996 * 111.11518 * 273.00267 * 21 19 18 43 43 H 1.09003 * 111.10937 * 37.12787 * 21 19 18 44 44 H 1.08996 * 110.91799 * 84.51027 * 22 21 19 45 45 H 1.08998 * 110.91664 * 208.14213 * 22 21 19 46 46 H 1.08999 * 113.64260 * 205.46732 * 24 23 22 47 47 H 1.09005 * 113.64090 * 336.45733 * 24 23 22 48 48 H 1.08999 * 113.60538 * 270.42378 * 25 24 23 49 49 H 1.09006 * 113.60033 * 139.57572 * 25 24 23 50 50 H 1.08996 * 113.63864 * 23.51397 * 26 23 22 51 51 H 1.08991 * 113.63999 * 154.50488 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5032 -0.7865 1.2123 6 6 4.1754 -1.5699 0.1728 7 6 4.2662 -3.0096 0.6087 8 1 3.8631 -3.3111 1.5643 9 6 4.8640 -3.9421 -0.2124 10 7 4.9437 -5.1985 0.1683 11 14 5.5605 -3.4210 -1.8654 12 1 6.9813 -3.0217 -1.7002 13 1 5.4731 -4.5556 -2.8194 14 1 4.7812 -2.2713 -2.3908 15 16 4.3970 0.0253 2.3456 16 8 5.5536 -0.7811 2.5229 17 8 3.4882 0.2481 3.4150 18 6 4.8310 1.5926 1.5420 19 6 5.8292 2.3546 2.4160 20 1 6.7196 1.7503 2.5896 21 6 6.2132 3.6990 1.7469 22 6 6.6350 4.5376 2.9859 23 6 5.6867 4.0032 4.0732 24 6 6.2416 4.0819 5.4989 25 6 5.5821 5.4693 5.5900 26 6 4.5975 4.9883 4.5097 27 8 5.2210 2.7174 3.6680 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8169 1.9068 0.9606 33 1 3.1176 1.4469 -0.1642 34 1 1.5489 2.0015 -0.7965 35 1 1.6318 -1.7315 1.2777 36 1 1.7230 -0.1761 2.1384 37 1 3.6067 -1.5064 -0.7549 38 1 5.1785 -1.1751 0.0119 39 1 5.3639 -5.8546 -0.4096 40 1 3.9316 2.1939 1.4088 41 1 5.2800 1.3902 0.5696 42 1 7.0475 3.5703 1.0575 43 1 5.3558 4.1461 1.2437 44 1 7.6754 4.3468 3.2490 45 1 6.4676 5.6004 2.8117 46 1 5.8089 3.3469 6.1776 47 1 7.3303 4.1117 5.5432 48 1 6.2288 6.2824 5.2603 49 1 5.1111 5.6662 6.5531 50 1 4.3671 5.7454 3.7601 51 1 3.7076 4.5054 4.9131 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413294407.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:36:18 Heat of formation + Delta-G solvation = -125.974262 kcal Electronic energy + Delta-G solvation = -30712.048403 eV Core-core repulsion = 26738.201648 eV Total energy + Delta-G solvation = -3973.846755 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.181 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.50725 -38.67158 -38.11302 -37.78296 -36.89567 -35.36323 -34.01903 -33.54057 -31.76234 -29.90833 -28.03661 -26.73314 -26.70731 -26.09690 -24.04400 -23.59436 -22.47390 -20.97752 -19.97353 -19.66702 -19.01706 -18.54969 -18.11610 -17.41673 -17.19132 -17.00267 -16.25224 -16.01765 -15.83830 -15.67205 -15.46545 -14.91857 -14.66825 -14.56279 -14.16189 -13.95147 -13.70782 -13.63680 -13.34411 -13.30778 -13.18562 -13.15258 -13.08824 -12.94213 -12.88577 -12.81956 -12.74498 -12.48540 -12.33880 -12.11880 -12.07341 -11.84987 -11.81022 -11.73509 -11.66796 -11.62078 -11.47267 -11.24771 -11.21201 -10.75165 -10.46105 -9.65279 -8.26011 -6.31396 -0.70651 1.36422 1.41922 1.50267 1.79816 2.37469 2.54929 2.95002 3.06905 3.21910 3.31924 3.51545 3.57810 3.71855 3.82488 3.87960 3.89136 3.91391 4.08175 4.15130 4.17739 4.26998 4.37175 4.39909 4.50572 4.65203 4.72726 4.77364 4.80874 4.83470 4.84464 4.87616 4.89701 4.97415 5.02132 5.04658 5.05547 5.07585 5.09964 5.16515 5.28658 5.29956 5.31748 5.41746 5.46338 5.52344 5.60380 5.80853 6.05239 6.34964 6.71205 7.30249 8.92545 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013478 B = 0.003731 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.970648 B = 7503.305979 C = 8343.208953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.112 4.112 3 C -0.161 4.161 4 C 0.120 3.880 5 N -0.987 5.987 6 C 0.234 3.766 7 C -0.538 4.538 8 H 0.017 0.983 9 C 0.000 4.000 10 N -0.954 5.954 11 Si 0.945 3.055 12 H -0.266 1.266 13 H -0.281 1.281 14 H -0.221 1.221 15 S 2.590 3.410 16 O -0.997 6.997 17 O -0.990 6.990 18 C -0.611 4.611 19 C 0.071 3.929 20 H 0.078 0.922 21 C -0.131 4.131 22 C -0.125 4.125 23 C 0.061 3.939 24 C -0.156 4.156 25 C -0.124 4.124 26 C -0.141 4.141 27 O -0.393 6.393 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.048 0.952 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.081 0.919 35 H 0.050 0.950 36 H 0.087 0.913 37 H 0.062 0.938 38 H 0.038 0.962 39 H 0.266 0.734 40 H 0.166 0.834 41 H 0.175 0.825 42 H 0.111 0.889 43 H 0.100 0.900 44 H 0.090 0.910 45 H 0.114 0.886 46 H 0.067 0.933 47 H 0.083 0.917 48 H 0.106 0.894 49 H 0.078 0.922 50 H 0.092 0.908 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.377 28.766 -1.304 28.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.132 4.132 3 C -0.218 4.218 4 C -0.006 4.006 5 N -0.823 5.823 6 C 0.109 3.891 7 C -0.577 4.577 8 H 0.036 0.964 9 C -0.197 4.197 10 N -0.595 5.595 11 Si 0.766 3.234 12 H -0.191 1.191 13 H -0.207 1.207 14 H -0.143 1.143 15 S 2.689 3.311 16 O -0.987 6.987 17 O -0.980 6.980 18 C -0.744 4.744 19 C 0.012 3.988 20 H 0.096 0.904 21 C -0.169 4.169 22 C -0.162 4.162 23 C 0.023 3.977 24 C -0.194 4.194 25 C -0.161 4.161 26 C -0.179 4.179 27 O -0.314 6.314 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.067 0.933 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.100 0.900 35 H 0.069 0.931 36 H 0.105 0.895 37 H 0.079 0.921 38 H 0.056 0.944 39 H 0.075 0.925 40 H 0.184 0.816 41 H 0.192 0.808 42 H 0.129 0.871 43 H 0.118 0.882 44 H 0.109 0.891 45 H 0.132 0.868 46 H 0.086 0.914 47 H 0.101 0.899 48 H 0.125 0.875 49 H 0.097 0.903 50 H 0.110 0.890 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.284 28.106 -0.353 28.110 hybrid contribution 0.335 -1.051 -0.474 1.201 sum 0.051 27.055 -0.827 27.067 Atomic orbital electron populations 1.21760 0.93347 1.01947 1.02842 1.21480 0.96956 0.97124 0.97644 1.22139 1.01852 0.94974 1.02839 1.21478 0.78501 1.00956 0.99625 1.57112 1.15232 1.62249 1.47720 1.19228 0.92710 0.88929 0.88217 1.21698 1.38043 0.94157 1.03786 0.96439 1.26046 0.95755 0.94500 1.03351 1.70108 1.46031 1.03619 1.39723 0.85764 0.79930 0.79812 0.77858 1.19071 1.20687 1.14297 1.05253 0.73518 0.77521 0.74857 1.93559 1.52757 1.66801 1.85578 1.93463 1.63899 1.87433 1.53231 1.30814 1.11432 1.19311 1.12812 1.22868 0.93214 0.98745 0.84006 0.90395 1.23320 1.04069 0.91273 0.98270 1.22932 0.99246 1.02037 0.91973 1.23669 0.96175 0.82714 0.95175 1.23423 1.01425 0.98611 0.95890 1.22690 0.98045 0.95929 0.99449 1.23310 0.97324 0.97721 0.99544 1.88485 1.68487 1.36605 1.37791 0.92044 0.90558 0.93275 0.90871 0.92397 0.92035 0.89960 0.93142 0.89503 0.92052 0.94398 0.92493 0.81592 0.80755 0.87101 0.88164 0.89136 0.86754 0.91398 0.89869 0.87543 0.90344 0.88978 0.91053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 9.18 71.98 0.66 -2.41 16 2 C -0.11 -2.96 2.92 -10.79 -0.03 -2.99 16 3 C -0.16 -3.27 7.96 71.98 0.57 -2.70 16 4 C 0.12 4.31 5.23 86.38 0.45 4.76 16 5 N -0.99 -40.60 2.34 -519.83 -1.22 -41.81 16 6 C 0.23 10.73 3.97 85.63 0.34 11.07 16 7 C -0.54 -32.33 9.92 25.60 0.25 -32.08 16 8 H 0.02 1.21 8.06 -2.91 -0.02 1.19 16 9 C 0.00 0.01 5.47 84.65 0.46 0.47 16 10 N -0.95 -62.18 13.96 21.45 0.30 -61.88 16 11 Si 0.95 42.48 27.47 68.60 1.88 44.36 16 12 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 13 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 14 H -0.22 -8.31 6.54 99.48 0.65 -7.66 16 15 S 2.59 105.94 5.14 -56.49 -0.29 105.65 16 16 O -1.00 -51.08 17.21 -127.65 -2.20 -53.28 16 17 O -0.99 -44.91 16.30 -127.65 -2.08 -46.99 16 18 C -0.61 -15.51 4.51 71.98 0.32 -15.19 16 19 C 0.07 1.74 3.45 31.28 0.11 1.85 16 20 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 21 C -0.13 -1.86 6.58 32.12 0.21 -1.65 16 22 C -0.12 -1.61 6.13 31.72 0.19 -1.42 16 23 C 0.06 1.24 1.65 -10.37 -0.02 1.22 16 24 C -0.16 -2.96 7.60 30.96 0.24 -2.72 16 25 C -0.12 -1.64 7.88 31.19 0.25 -1.39 16 26 C -0.14 -2.38 7.52 30.96 0.23 -2.14 16 27 O -0.39 -11.46 10.52 -148.98 -1.57 -13.03 16 28 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.07 2.05 6.78 -2.38 -0.02 2.04 16 32 H 0.06 1.14 7.79 -2.39 -0.02 1.12 16 33 H 0.06 1.18 5.73 -2.39 -0.01 1.16 16 34 H 0.08 1.27 8.12 -2.39 -0.02 1.25 16 35 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.09 3.04 6.64 -2.38 -0.02 3.02 16 37 H 0.06 2.51 5.73 -2.39 -0.01 2.50 16 38 H 0.04 1.64 7.20 -2.39 -0.02 1.62 16 39 H 0.27 16.04 8.31 -92.70 -0.77 15.27 16 40 H 0.17 3.38 6.02 -2.39 -0.01 3.36 16 41 H 0.17 3.33 8.09 -2.39 -0.02 3.31 16 42 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.10 1.13 8.05 -2.39 -0.02 1.11 16 44 H 0.09 1.04 8.00 -2.39 -0.02 1.02 16 45 H 0.11 0.86 7.85 -2.39 -0.02 0.85 16 46 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 47 H 0.08 1.33 8.00 -2.38 -0.02 1.32 16 48 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 49 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 50 H 0.09 1.13 8.00 -2.39 -0.02 1.11 16 51 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -87.53 403.45 -0.09 -87.62 By element: Atomic # 1 Polarization: 23.84 SS G_CDS: 0.83 Total: 24.67 kcal Atomic # 6 Polarization: -49.56 SS G_CDS: 4.25 Total: -45.32 kcal Atomic # 7 Polarization: -102.77 SS G_CDS: -0.92 Total: -103.69 kcal Atomic # 8 Polarization: -107.46 SS G_CDS: -5.84 Total: -113.30 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 1.88 Total: 44.36 kcal Atomic # 16 Polarization: 105.94 SS G_CDS: -0.29 Total: 105.65 kcal Total: -87.53 -0.09 -87.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413294407.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.354 kcal (2) G-P(sol) polarization free energy of solvation -87.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds