Wall clock time and date at job start Sat Apr 11 2020 07:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.52997 * 109.47127 * 119.99936 * 2 1 3 5 5 C 1.50701 * 109.47212 * 300.00129 * 4 2 1 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47432 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46890 * 120.00210 * 9 7 5 12 12 H 1.48501 * 109.47062 * 240.00257 * 9 7 5 13 13 C 1.52992 * 109.47223 * 240.00442 * 2 1 3 14 14 N 1.46507 * 109.47485 * 59.99555 * 13 2 1 15 15 S 1.65601 * 119.99998 * 165.00170 * 14 13 2 16 16 O 1.42099 * 104.27705 * 181.07357 * 15 14 13 17 17 O 1.42108 * 104.27438 * 308.93139 * 15 14 13 18 18 C 1.81399 * 104.44994 * 64.99904 * 15 14 13 19 19 C 1.53000 * 109.46861 * 179.97438 * 18 15 14 20 20 H 1.09003 * 110.24516 * 60.56108 * 19 18 15 21 21 C 1.55191 * 110.27728 * 182.66812 * 19 18 15 22 22 C 1.54009 * 100.75794 * 154.08460 * 21 19 18 23 23 C 1.52410 * 115.91912 * 96.36059 * 22 21 19 24 24 C 1.54038 * 86.64061 * 93.64004 * 23 22 21 25 25 C 1.52394 * 115.93855 * 198.17186 * 22 21 19 26 26 C 1.53089 * 103.79089 * 327.28605 * 22 21 19 27 27 O 1.43599 * 107.16864 * 19.97103 * 26 22 21 28 28 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 29 29 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 30 30 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 33 33 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 34 34 H 1.09002 * 109.47153 * 180.02562 * 4 2 1 35 35 H 1.09001 * 109.46832 * 60.00321 * 4 2 1 36 36 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 37 37 H 1.09002 * 109.47103 * 179.97438 * 13 2 1 38 38 H 1.09001 * 109.47066 * 299.99881 * 13 2 1 39 39 H 0.96994 * 119.99887 * 345.00254 * 14 13 2 40 40 H 1.08993 * 109.47380 * 299.99837 * 18 15 14 41 41 H 1.08997 * 109.46939 * 60.00356 * 18 15 14 42 42 H 1.08997 * 111.16348 * 271.96269 * 21 19 18 43 43 H 1.09005 * 111.16017 * 36.21346 * 21 19 18 44 44 H 1.08998 * 113.68278 * 208.07835 * 23 22 21 45 45 H 1.08994 * 113.68625 * 339.20596 * 23 22 21 46 46 H 1.08992 * 113.57511 * 269.77693 * 24 23 22 47 47 H 1.08998 * 113.63836 * 139.01838 * 24 23 22 48 48 H 1.09002 * 113.68496 * 20.81477 * 25 22 21 49 49 H 1.09000 * 113.68303 * 151.93557 * 25 22 21 50 50 H 1.09000 * 109.89555 * 260.58748 * 26 22 21 51 51 H 1.08997 * 110.04231 * 139.44159 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.5377 -0.0108 2.4797 6 1 0.9164 0.8670 2.3806 7 6 1.8704 -0.4822 3.7320 8 7 2.6265 -1.5515 3.8526 9 14 1.2471 0.3979 5.2571 10 1 0.4217 1.5644 4.8530 11 1 0.4219 -0.5358 6.0650 12 1 2.4018 0.8645 6.0660 13 6 2.0401 -0.7211 -1.2492 14 7 1.5517 -0.0305 -2.4455 15 16 2.2318 -0.3494 -3.9213 16 8 1.5364 0.5045 -4.8194 17 8 3.6282 -0.2018 -3.7029 18 6 1.8182 -2.0857 -4.2446 19 6 2.3979 -2.5047 -5.5972 20 1 3.4830 -2.4005 -5.5910 21 6 1.9980 -3.9682 -5.9237 22 6 2.0561 -3.9456 -7.4625 23 6 3.3513 -4.4502 -8.0877 24 6 2.6638 -5.8253 -8.1822 25 6 1.3191 -5.0739 -8.1740 26 6 1.6338 -2.5189 -7.8227 27 8 1.8271 -1.7111 -6.6514 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1301 -0.7208 1.2495 35 1 1.6767 -1.7489 1.2492 36 1 2.8608 -1.8829 4.7336 37 1 3.1301 -0.7207 -1.2494 38 1 1.6767 -1.7488 -1.2493 39 1 0.8300 0.6135 -2.3730 40 1 2.2397 -2.7121 -3.4586 41 1 0.7348 -2.2040 -4.2618 42 1 2.7196 -4.6743 -5.5130 43 1 0.9903 -4.1887 -5.5712 44 1 3.5725 -4.0036 -9.0571 45 1 4.2023 -4.4320 -7.4069 46 1 2.8185 -6.4514 -7.3036 47 1 2.8637 -6.3507 -9.1161 48 1 0.5542 -5.5517 -7.5619 49 1 0.9617 -4.8049 -9.1680 50 1 0.5835 -2.5053 -8.1136 51 1 2.2497 -2.1420 -8.6392 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414276904.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:36:33 Heat of formation + Delta-G solvation = -116.796215 kcal Electronic energy + Delta-G solvation = -29249.396773 eV Core-core repulsion = 25275.948008 eV Total energy + Delta-G solvation = -3973.448765 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.181 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.05548 -37.71570 -37.55068 -36.85994 -35.75034 -33.54300 -32.68964 -31.88696 -29.84189 -27.09173 -26.93809 -26.44939 -26.28205 -25.81578 -22.89354 -22.74629 -21.96425 -19.38564 -18.96376 -18.39228 -17.45000 -17.14045 -16.45248 -16.35724 -16.00231 -15.75147 -15.62802 -15.09353 -14.63854 -14.51615 -14.16658 -14.08943 -13.66989 -13.37051 -13.27510 -12.86552 -12.73394 -12.69460 -12.40824 -12.30631 -12.16809 -12.08032 -11.90380 -11.82134 -11.76430 -11.57166 -11.21574 -11.10323 -11.00881 -10.82301 -10.76708 -10.66872 -10.62202 -10.49532 -10.37999 -10.22822 -9.92309 -9.87777 -9.22587 -9.12596 -8.89096 -8.37014 -6.01460 -4.01825 0.36076 2.91048 3.25824 3.29843 3.38179 3.41179 3.73138 3.85691 3.98161 4.10482 4.25320 4.32922 4.44820 4.49115 4.52477 4.69911 4.72793 4.95318 5.05374 5.19733 5.23037 5.26616 5.31017 5.32949 5.34665 5.39367 5.42956 5.49552 5.53641 5.57704 5.63660 5.76255 5.77768 5.86924 5.89896 6.12263 6.25893 6.35684 6.42781 6.54158 6.67907 6.71034 7.07453 7.10954 7.15553 7.25168 7.61896 7.75099 7.97798 8.40763 9.03100 9.61424 11.10110 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.020731 B = 0.002248 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.335719 B =12454.382399 C =13182.855389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.065 4.065 3 C -0.129 4.129 4 C 0.033 3.967 5 C -0.509 4.509 6 H 0.060 0.940 7 C 0.055 3.945 8 N -0.896 5.896 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.120 3.880 14 N -1.115 6.115 15 S 2.616 3.384 16 O -0.950 6.950 17 O -0.957 6.957 18 C -0.638 4.638 19 C 0.091 3.909 20 H 0.089 0.911 21 C -0.118 4.118 22 C -0.122 4.122 23 C -0.129 4.129 24 C -0.140 4.140 25 C -0.124 4.124 26 C 0.066 3.934 27 O -0.374 6.374 28 H 0.067 0.933 29 H 0.031 0.969 30 H 0.047 0.953 31 H 0.048 0.952 32 H 0.033 0.967 33 H 0.065 0.935 34 H 0.020 0.980 35 H 0.018 0.982 36 H 0.259 0.741 37 H 0.076 0.924 38 H 0.058 0.942 39 H 0.416 0.584 40 H 0.145 0.855 41 H 0.140 0.860 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.073 0.927 46 H 0.082 0.918 47 H 0.069 0.931 48 H 0.073 0.927 49 H 0.086 0.914 50 H 0.076 0.924 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.300 -8.111 -24.298 25.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.067 4.067 3 C -0.186 4.186 4 C -0.005 4.005 5 C -0.547 4.547 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.536 5.536 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.211 1.211 13 C -0.006 4.006 14 N -0.877 5.877 15 S 2.707 3.293 16 O -0.940 6.940 17 O -0.947 6.947 18 C -0.766 4.766 19 C 0.032 3.968 20 H 0.107 0.893 21 C -0.157 4.157 22 C -0.122 4.122 23 C -0.166 4.166 24 C -0.177 4.177 25 C -0.161 4.161 26 C -0.011 4.011 27 O -0.294 6.294 28 H 0.086 0.914 29 H 0.050 0.950 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.052 0.948 33 H 0.084 0.916 34 H 0.038 0.962 35 H 0.036 0.964 36 H 0.069 0.931 37 H 0.095 0.905 38 H 0.076 0.924 39 H 0.252 0.748 40 H 0.163 0.837 41 H 0.158 0.842 42 H 0.109 0.891 43 H 0.107 0.893 44 H 0.105 0.895 45 H 0.092 0.908 46 H 0.100 0.900 47 H 0.088 0.912 48 H 0.092 0.908 49 H 0.104 0.896 50 H 0.094 0.906 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.635 -7.533 -24.692 25.868 hybrid contribution -0.914 -0.280 1.262 1.584 sum -2.549 -7.813 -23.430 24.830 Atomic orbital electron populations 1.21773 0.95358 1.01005 1.00459 1.20795 0.95384 0.96032 0.94448 1.21754 1.00653 0.95787 1.00397 1.19147 0.96465 0.95144 0.89728 1.21239 1.30951 1.12016 0.90488 0.92159 1.25011 0.95350 0.95106 0.99105 1.69966 1.37140 1.23147 1.23304 0.86590 0.78608 0.79692 0.83413 1.19792 1.21193 1.21139 1.21605 0.99268 0.94981 0.84697 1.55640 1.53173 1.55837 1.23016 1.04762 0.74756 0.76741 0.73012 1.93591 1.74684 1.62112 1.63597 1.93599 1.31408 1.84938 1.84730 1.30802 1.12430 1.28869 1.04456 1.22583 0.97545 0.91439 0.85273 0.89346 1.22932 1.03598 0.95850 0.93290 1.22526 0.98753 0.95262 0.95689 1.22839 0.96028 0.96508 1.01238 1.22900 0.96095 0.96344 1.02409 1.22708 0.97002 0.95674 1.00734 1.23013 1.01377 0.88514 0.88152 1.88618 1.83748 1.34986 1.22046 0.91410 0.94974 0.93423 0.93273 0.94796 0.91627 0.96212 0.96392 0.93140 0.90542 0.92360 0.74778 0.83658 0.84200 0.89131 0.89330 0.89478 0.90799 0.89981 0.91194 0.90846 0.89578 0.90606 0.90810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 2 C -0.06 -1.21 0.55 -154.51 -0.08 -1.30 16 3 C -0.13 -2.38 8.05 37.16 0.30 -2.08 16 4 C 0.03 0.78 4.04 -27.88 -0.11 0.67 16 5 C -0.51 -13.34 7.65 -34.44 -0.26 -13.60 16 6 H 0.06 1.54 5.68 -52.49 -0.30 1.24 16 7 C 0.06 1.51 5.46 -17.82 -0.10 1.42 16 8 N -0.90 -25.98 13.29 55.43 0.74 -25.24 16 9 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 10 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 13 C 0.12 1.88 5.02 -4.04 -0.02 1.86 16 14 N -1.11 -15.41 5.22 -10.61 -0.06 -15.47 16 15 S 2.62 36.42 5.28 -107.50 -0.57 35.85 16 16 O -0.95 -15.89 17.51 -60.86 -1.07 -16.96 16 17 O -0.96 -16.40 17.50 -57.54 -1.01 -17.40 16 18 C -0.64 -6.35 5.82 37.16 0.22 -6.14 16 19 C 0.09 0.92 3.49 -25.57 -0.09 0.83 16 20 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 21 C -0.12 -0.89 5.77 -25.04 -0.14 -1.04 16 22 C -0.12 -0.85 0.94 -154.58 -0.15 -1.00 16 23 C -0.13 -0.78 7.32 -26.49 -0.19 -0.97 16 24 C -0.14 -0.73 7.97 -25.68 -0.20 -0.93 16 25 C -0.12 -0.68 7.41 -26.50 -0.20 -0.88 16 26 C 0.07 0.57 7.31 37.20 0.27 0.84 16 27 O -0.37 -4.52 10.25 -38.50 -0.39 -4.92 16 28 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 29 H 0.03 0.45 6.60 -51.93 -0.34 0.11 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.03 0.54 7.20 -51.93 -0.37 0.17 16 33 H 0.06 1.29 6.62 -51.93 -0.34 0.94 16 34 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 37 H 0.08 1.25 7.69 -51.93 -0.40 0.85 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.42 5.43 6.44 -34.47 -0.22 5.21 16 40 H 0.15 1.15 8.14 -51.93 -0.42 0.72 16 41 H 0.14 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.09 0.57 8.06 -51.93 -0.42 0.15 16 43 H 0.09 0.62 8.05 -51.93 -0.42 0.20 16 44 H 0.09 0.47 8.03 -51.93 -0.42 0.05 16 45 H 0.07 0.46 8.12 -51.93 -0.42 0.03 16 46 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 47 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.07 0.39 8.12 -51.93 -0.42 -0.03 16 49 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 50 H 0.08 0.59 8.08 -51.93 -0.42 0.17 16 51 H 0.07 0.57 7.88 -51.93 -0.41 0.16 16 LS Contribution 405.80 15.07 6.12 6.12 Total: -1.00 -33.94 405.80 -10.76 -44.70 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -9.03 Total: 1.46 kcal Atomic # 6 Polarization: -23.75 SS G_CDS: -0.47 Total: -24.21 kcal Atomic # 7 Polarization: -41.39 SS G_CDS: 0.68 Total: -40.71 kcal Atomic # 8 Polarization: -36.81 SS G_CDS: -2.47 Total: -39.28 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 36.42 SS G_CDS: -0.57 Total: 35.85 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.94 -10.76 -44.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414276904.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.094 kcal (2) G-P(sol) polarization free energy of solvation -33.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds