Wall clock time and date at job start Sat Apr 11 2020 07:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.52997 * 109.47127 * 119.99936 * 2 1 3 5 5 C 1.50701 * 109.47212 * 300.00129 * 4 2 1 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47432 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46890 * 120.00210 * 9 7 5 12 12 H 1.48501 * 109.47062 * 240.00257 * 9 7 5 13 13 C 1.52992 * 109.47223 * 240.00442 * 2 1 3 14 14 N 1.46507 * 109.47485 * 59.99555 * 13 2 1 15 15 S 1.65601 * 119.99998 * 165.00170 * 14 13 2 16 16 O 1.42099 * 104.27705 * 181.07357 * 15 14 13 17 17 O 1.42108 * 104.27438 * 308.93139 * 15 14 13 18 18 C 1.81399 * 104.44994 * 64.99904 * 15 14 13 19 19 C 1.53000 * 109.46861 * 179.97438 * 18 15 14 20 20 H 1.09003 * 110.24516 * 60.56108 * 19 18 15 21 21 C 1.55191 * 110.27728 * 182.66812 * 19 18 15 22 22 C 1.54009 * 100.75794 * 154.08460 * 21 19 18 23 23 C 1.52410 * 115.91912 * 96.36059 * 22 21 19 24 24 C 1.54038 * 86.64061 * 93.64004 * 23 22 21 25 25 C 1.52394 * 115.93855 * 198.17186 * 22 21 19 26 26 C 1.53089 * 103.79089 * 327.28605 * 22 21 19 27 27 O 1.43599 * 107.16864 * 19.97103 * 26 22 21 28 28 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 29 29 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 30 30 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 33 33 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 34 34 H 1.09002 * 109.47153 * 180.02562 * 4 2 1 35 35 H 1.09001 * 109.46832 * 60.00321 * 4 2 1 36 36 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 37 37 H 1.09002 * 109.47103 * 179.97438 * 13 2 1 38 38 H 1.09001 * 109.47066 * 299.99881 * 13 2 1 39 39 H 0.96994 * 119.99887 * 345.00254 * 14 13 2 40 40 H 1.08993 * 109.47380 * 299.99837 * 18 15 14 41 41 H 1.08997 * 109.46939 * 60.00356 * 18 15 14 42 42 H 1.08997 * 111.16348 * 271.96269 * 21 19 18 43 43 H 1.09005 * 111.16017 * 36.21346 * 21 19 18 44 44 H 1.08998 * 113.68278 * 208.07835 * 23 22 21 45 45 H 1.08994 * 113.68625 * 339.20596 * 23 22 21 46 46 H 1.08992 * 113.57511 * 269.77693 * 24 23 22 47 47 H 1.08998 * 113.63836 * 139.01838 * 24 23 22 48 48 H 1.09002 * 113.68496 * 20.81477 * 25 22 21 49 49 H 1.09000 * 113.68303 * 151.93557 * 25 22 21 50 50 H 1.09000 * 109.89555 * 260.58748 * 26 22 21 51 51 H 1.08997 * 110.04231 * 139.44159 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.5377 -0.0108 2.4797 6 1 0.9164 0.8670 2.3806 7 6 1.8704 -0.4822 3.7320 8 7 2.6265 -1.5515 3.8526 9 14 1.2471 0.3979 5.2571 10 1 0.4217 1.5644 4.8530 11 1 0.4219 -0.5358 6.0650 12 1 2.4018 0.8645 6.0660 13 6 2.0401 -0.7211 -1.2492 14 7 1.5517 -0.0305 -2.4455 15 16 2.2318 -0.3494 -3.9213 16 8 1.5364 0.5045 -4.8194 17 8 3.6282 -0.2018 -3.7029 18 6 1.8182 -2.0857 -4.2446 19 6 2.3979 -2.5047 -5.5972 20 1 3.4830 -2.4005 -5.5910 21 6 1.9980 -3.9682 -5.9237 22 6 2.0561 -3.9456 -7.4625 23 6 3.3513 -4.4502 -8.0877 24 6 2.6638 -5.8253 -8.1822 25 6 1.3191 -5.0739 -8.1740 26 6 1.6338 -2.5189 -7.8227 27 8 1.8271 -1.7111 -6.6514 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1301 -0.7208 1.2495 35 1 1.6767 -1.7489 1.2492 36 1 2.8608 -1.8829 4.7336 37 1 3.1301 -0.7207 -1.2494 38 1 1.6767 -1.7488 -1.2493 39 1 0.8300 0.6135 -2.3730 40 1 2.2397 -2.7121 -3.4586 41 1 0.7348 -2.2040 -4.2618 42 1 2.7196 -4.6743 -5.5130 43 1 0.9903 -4.1887 -5.5712 44 1 3.5725 -4.0036 -9.0571 45 1 4.2023 -4.4320 -7.4069 46 1 2.8185 -6.4514 -7.3036 47 1 2.8637 -6.3507 -9.1161 48 1 0.5542 -5.5517 -7.5619 49 1 0.9617 -4.8049 -9.1680 50 1 0.5835 -2.5053 -8.1136 51 1 2.2497 -2.1420 -8.6392 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414276904.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:36:32 Heat of formation + Delta-G solvation = -139.593280 kcal Electronic energy + Delta-G solvation = -29250.385328 eV Core-core repulsion = 25275.948008 eV Total energy + Delta-G solvation = -3974.437320 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.181 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -41.63077 -39.17139 -38.17744 -38.07234 -36.96084 -35.19872 -33.64090 -33.43720 -30.42667 -28.94502 -27.90875 -27.67544 -27.20588 -26.70534 -24.61563 -23.38117 -22.69970 -20.39463 -19.89217 -19.57732 -18.53639 -18.32046 -17.99408 -17.33177 -16.98353 -16.74250 -16.46262 -16.10064 -15.84691 -15.71240 -15.53369 -14.94788 -14.79537 -14.41703 -14.20424 -14.05726 -13.89805 -13.89009 -13.49196 -13.15279 -13.14301 -13.12696 -13.05331 -12.94971 -12.90704 -12.79108 -12.64385 -12.59867 -12.27696 -12.16281 -12.06262 -11.91090 -11.75212 -11.49316 -11.28211 -11.18346 -11.13330 -10.92232 -10.80184 -10.64522 -10.47667 -10.26619 -8.11568 -6.17040 -0.70845 1.41550 1.43996 1.54524 1.80844 2.46095 2.57492 2.80291 3.22302 3.23352 3.28017 3.40520 3.60186 3.81466 3.86602 3.91528 3.94800 3.98364 4.17261 4.19003 4.26033 4.31502 4.50334 4.56210 4.56742 4.74194 4.76367 4.80238 4.82661 4.84735 4.87270 4.91829 4.95335 4.97841 5.03428 5.10909 5.15212 5.18105 5.24326 5.32003 5.49214 5.52217 5.54099 5.59385 5.62755 5.85336 5.87483 5.95267 6.13965 6.37943 6.97806 7.49804 9.00613 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.020731 B = 0.002248 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.335719 B =12454.382399 C =13182.855389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.063 4.063 3 C -0.128 4.128 4 C 0.037 3.963 5 C -0.512 4.512 6 H 0.065 0.935 7 C -0.002 4.002 8 N -0.934 5.934 9 Si 0.952 3.048 10 H -0.263 1.263 11 H -0.282 1.282 12 H -0.286 1.286 13 C 0.125 3.875 14 N -1.111 6.111 15 S 2.617 3.383 16 O -0.982 6.982 17 O -0.998 6.998 18 C -0.614 4.614 19 C 0.076 3.924 20 H 0.086 0.914 21 C -0.113 4.113 22 C -0.123 4.123 23 C -0.133 4.133 24 C -0.136 4.136 25 C -0.119 4.119 26 C 0.056 3.944 27 O -0.405 6.405 28 H 0.048 0.952 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.035 0.965 32 H 0.059 0.941 33 H 0.050 0.950 34 H -0.011 1.011 35 H 0.002 0.998 36 H 0.259 0.741 37 H 0.064 0.936 38 H 0.085 0.915 39 H 0.420 0.580 40 H 0.172 0.828 41 H 0.164 0.836 42 H 0.105 0.895 43 H 0.098 0.902 44 H 0.090 0.910 45 H 0.070 0.930 46 H 0.085 0.915 47 H 0.076 0.924 48 H 0.078 0.922 49 H 0.093 0.907 50 H 0.082 0.918 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.858 -9.175 -25.339 27.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.064 4.064 3 C -0.185 4.185 4 C -0.001 4.001 5 C -0.550 4.550 6 H 0.084 0.916 7 C -0.199 4.199 8 N -0.576 5.576 9 Si 0.778 3.222 10 H -0.187 1.187 11 H -0.208 1.208 12 H -0.213 1.213 13 C -0.001 4.001 14 N -0.872 5.872 15 S 2.713 3.287 16 O -0.972 6.972 17 O -0.988 6.988 18 C -0.746 4.746 19 C 0.017 3.983 20 H 0.104 0.896 21 C -0.152 4.152 22 C -0.123 4.123 23 C -0.170 4.170 24 C -0.173 4.173 25 C -0.157 4.157 26 C -0.020 4.020 27 O -0.325 6.325 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.054 0.946 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.008 0.992 35 H 0.020 0.980 36 H 0.068 0.932 37 H 0.083 0.917 38 H 0.103 0.897 39 H 0.257 0.743 40 H 0.190 0.810 41 H 0.182 0.818 42 H 0.123 0.877 43 H 0.116 0.884 44 H 0.109 0.891 45 H 0.089 0.911 46 H 0.103 0.897 47 H 0.095 0.905 48 H 0.096 0.904 49 H 0.111 0.889 50 H 0.100 0.900 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.197 -8.531 -25.731 27.296 hybrid contribution -0.411 0.029 1.500 1.555 sum -3.607 -8.502 -24.231 25.932 Atomic orbital electron populations 1.21718 0.93724 1.01654 1.01126 1.20653 0.96664 0.95588 0.93531 1.21733 0.99842 0.96024 1.00900 1.19028 0.94508 0.94726 0.91805 1.21641 1.30094 1.11871 0.91419 0.91648 1.25839 0.95824 0.95924 1.02334 1.70089 1.38787 1.24815 1.23906 0.85588 0.78005 0.78830 0.79752 1.18694 1.20840 1.21260 1.21434 0.98700 0.96054 0.83888 1.55423 1.53040 1.56394 1.22354 1.04491 0.73543 0.78336 0.72305 1.93548 1.74901 1.64686 1.64112 1.93547 1.33786 1.86469 1.85042 1.30612 1.14221 1.24311 1.05483 1.22812 0.97532 0.93104 0.84830 0.89628 1.22960 1.04502 0.94029 0.93665 1.22559 0.99657 0.94550 0.95549 1.22899 0.95648 0.97190 1.01312 1.22890 0.95580 0.95878 1.02964 1.22723 0.97161 0.94801 1.00971 1.23223 1.01985 0.89416 0.87378 1.88592 1.83925 1.36703 1.23317 0.93319 0.91718 0.92806 0.94589 0.92255 0.93082 0.99214 0.97997 0.93209 0.91747 0.89710 0.74263 0.80999 0.81846 0.87696 0.88357 0.89137 0.91146 0.89662 0.90483 0.90380 0.88883 0.89972 0.90535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.03 8.05 71.98 0.58 -3.45 16 2 C -0.06 -2.30 0.55 -52.18 -0.03 -2.33 16 3 C -0.13 -4.68 8.05 71.98 0.58 -4.10 16 4 C 0.04 1.79 4.04 29.85 0.12 1.91 16 5 C -0.51 -27.04 7.65 25.60 0.20 -26.84 16 6 H 0.07 3.33 5.68 -2.91 -0.02 3.31 16 7 C 0.00 -0.13 5.46 84.66 0.46 0.34 16 8 N -0.93 -55.14 13.29 21.45 0.28 -54.85 16 9 Si 0.95 43.44 29.54 68.60 2.03 45.47 16 10 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 11 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 12 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 13 C 0.13 3.76 5.02 86.38 0.43 4.20 16 14 N -1.11 -28.86 5.22 -187.48 -0.98 -29.84 16 15 S 2.62 70.50 5.28 -56.49 -0.30 70.20 16 16 O -0.98 -32.47 17.51 -124.48 -2.18 -34.65 16 17 O -1.00 -34.42 17.50 -127.65 -2.23 -36.65 16 18 C -0.61 -10.65 5.82 71.98 0.42 -10.23 16 19 C 0.08 1.41 3.49 31.35 0.11 1.52 16 20 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 21 C -0.11 -1.39 5.77 31.69 0.18 -1.21 16 22 C -0.12 -1.46 0.94 -52.23 -0.05 -1.51 16 23 C -0.13 -1.38 7.32 30.75 0.23 -1.15 16 24 C -0.14 -1.09 7.97 31.27 0.25 -0.84 16 25 C -0.12 -1.01 7.41 30.74 0.23 -0.78 16 26 C 0.06 0.90 7.31 72.01 0.53 1.42 16 27 O -0.40 -9.38 10.25 -145.85 -1.50 -10.88 16 28 H 0.05 1.75 6.62 -2.39 -0.02 1.73 16 29 H 0.06 1.66 6.60 -2.39 -0.02 1.64 16 30 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.06 1.84 7.20 -2.39 -0.02 1.82 16 33 H 0.05 1.99 6.62 -2.39 -0.02 1.97 16 34 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 35 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 36 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 37 H 0.06 2.10 7.69 -2.39 -0.02 2.08 16 38 H 0.08 2.10 8.14 -2.39 -0.02 2.09 16 39 H 0.42 10.08 6.44 -96.75 -0.62 9.46 16 40 H 0.17 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.16 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.10 1.00 8.06 -2.39 -0.02 0.98 16 43 H 0.10 1.03 8.05 -2.38 -0.02 1.01 16 44 H 0.09 0.85 8.03 -2.39 -0.02 0.83 16 45 H 0.07 0.77 8.12 -2.39 -0.02 0.75 16 46 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 47 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 48 H 0.08 0.61 8.12 -2.39 -0.02 0.59 16 49 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 50 H 0.08 1.17 8.08 -2.39 -0.02 1.15 16 51 H 0.08 1.13 7.88 -2.39 -0.02 1.11 16 Total: -1.00 -74.60 405.80 -0.36 -74.96 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: 0.28 Total: 19.29 kcal Atomic # 6 Polarization: -47.28 SS G_CDS: 4.23 Total: -43.05 kcal Atomic # 7 Polarization: -84.00 SS G_CDS: -0.69 Total: -84.69 kcal Atomic # 8 Polarization: -76.27 SS G_CDS: -5.91 Total: -82.18 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Atomic # 16 Polarization: 70.50 SS G_CDS: -0.30 Total: 70.20 kcal Total: -74.60 -0.36 -74.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414276904.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.628 kcal (2) G-P(sol) polarization free energy of solvation -74.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds