Wall clock time and date at job start Sat Apr 11 2020 07:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53005 * 109.47089 * 2 1 4 4 C 1.50698 * 109.46984 * 240.00096 * 2 1 3 5 5 H 1.08005 * 119.99517 * 239.99863 * 4 2 1 6 6 C 1.37869 * 120.00254 * 60.00141 * 4 2 1 7 7 N 1.31511 * 120.00261 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00094 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47187 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47441 * 119.99906 * 8 6 4 11 11 H 1.48508 * 109.47114 * 239.99793 * 8 6 4 12 12 C 1.53003 * 109.47000 * 119.99824 * 2 1 3 13 13 S 1.81403 * 109.47091 * 300.00313 * 12 2 1 14 14 O 1.42098 * 110.54619 * 68.37322 * 13 12 2 15 15 O 1.42102 * 110.53893 * 291.62250 * 13 12 2 16 16 N 1.65603 * 104.44925 * 180.02562 * 13 12 2 17 17 C 1.46948 * 120.63917 * 265.70963 * 16 13 12 18 18 C 1.53193 * 108.74323 * 233.43025 * 17 16 13 19 19 C 1.53040 * 109.34488 * 305.28487 * 18 17 16 20 20 C 1.53074 * 109.52700 * 61.41244 * 19 18 17 21 21 C 1.46779 * 120.64022 * 85.68258 * 16 13 12 22 22 C 1.53187 * 109.45128 * 246.54028 * 21 16 13 23 23 C 1.53201 * 108.94747 * 63.34232 * 22 21 16 24 24 C 1.53089 * 109.20348 * 56.81045 * 23 22 21 25 25 O 1.42909 * 109.44132 * 302.28836 * 24 23 22 26 26 C 1.42942 * 114.08870 * 61.18675 * 25 24 23 27 27 H 1.08996 * 109.47236 * 300.00130 * 1 2 3 28 28 H 1.09001 * 109.46717 * 60.00139 * 1 2 3 29 29 H 1.08997 * 109.47082 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47005 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.46739 * 300.00117 * 3 2 1 32 32 H 1.09002 * 109.46804 * 60.00033 * 3 2 1 33 33 H 0.97001 * 120.00354 * 180.02562 * 7 6 4 34 34 H 1.08995 * 109.46870 * 180.02562 * 12 2 1 35 35 H 1.09002 * 109.46795 * 59.99814 * 12 2 1 36 36 H 1.09000 * 109.59317 * 353.20662 * 17 16 13 37 37 H 1.08998 * 109.59633 * 113.64838 * 17 16 13 38 38 H 1.08997 * 109.49199 * 65.25121 * 18 17 16 39 39 H 1.09005 * 109.49160 * 185.32182 * 18 17 16 40 40 H 1.08999 * 109.46148 * 181.42974 * 19 18 17 41 41 H 1.09000 * 109.46413 * 301.41121 * 19 18 17 42 42 H 1.08996 * 109.50135 * 178.88327 * 20 19 18 43 43 H 1.09010 * 109.49395 * 58.78630 * 20 19 18 44 44 H 1.09009 * 109.63280 * 303.47187 * 22 21 16 45 45 H 1.09001 * 109.52957 * 183.15699 * 22 21 16 46 46 H 1.08994 * 109.52867 * 296.87131 * 23 22 21 47 47 H 1.09007 * 109.51841 * 176.74231 * 23 22 21 48 48 H 1.09008 * 109.47734 * 62.27533 * 24 23 22 49 49 H 1.09002 * 109.47822 * 182.29362 * 24 23 22 50 50 H 1.09001 * 109.47978 * 59.03268 * 26 25 24 51 51 H 1.09001 * 109.48208 * 179.05132 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 3.1464 -2.2871 -3.6037 10 1 1.1662 -1.5867 -4.8160 11 1 3.1467 -0.1874 -4.8165 12 6 2.0400 -0.7212 1.2493 13 16 1.4353 0.1339 2.7304 14 8 0.0279 -0.0182 2.8544 15 8 2.0479 1.4101 2.8544 16 7 2.0541 -0.7399 3.9937 17 6 1.2631 -1.8045 4.6264 18 6 1.2083 -1.5464 6.1355 19 6 2.6328 -1.4160 6.6795 20 6 3.3285 -0.2270 6.0122 21 6 3.4034 -0.4664 4.5026 22 6 4.3096 -1.6680 4.2169 23 6 4.4316 -1.8496 2.7006 24 6 4.9632 -0.5553 2.0796 25 8 4.0872 0.5249 2.4085 26 6 3.9695 0.7743 3.8110 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 0.7082 1.1608 -3.4844 34 1 3.1300 -0.7208 1.2495 35 1 1.6766 -1.7489 1.2493 36 1 0.2524 -1.8009 4.2181 37 1 1.7323 -2.7700 4.4375 38 1 0.6599 -0.6242 6.3271 39 1 0.7053 -2.3782 6.6287 40 1 2.5969 -1.2577 7.7573 41 1 3.1885 -2.3289 6.4649 42 1 4.3362 -0.1224 6.4143 43 1 2.7616 0.6832 6.2085 44 1 3.8771 -2.5660 4.6582 45 1 5.2966 -1.4895 4.6436 46 1 3.4523 -2.0795 2.2812 47 1 5.1208 -2.6665 2.4860 48 1 5.9594 -0.3470 2.4702 49 1 5.0133 -0.6657 0.9963 50 1 4.9523 1.0036 4.2231 51 1 3.3006 1.6191 3.9752 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001424958850.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:36:57 Heat of formation + Delta-G solvation = -106.909930 kcal Electronic energy + Delta-G solvation = -33291.321963 eV Core-core repulsion = 29318.301899 eV Total energy + Delta-G solvation = -3973.020064 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.181 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.52802 -38.79494 -38.10730 -37.52791 -36.76501 -34.01238 -33.62612 -33.30691 -32.63273 -28.58365 -27.70953 -27.59442 -27.21604 -26.11682 -25.03924 -23.49932 -21.81150 -21.26065 -20.95666 -19.14570 -18.77974 -17.81781 -17.39124 -17.23920 -16.77019 -16.45415 -16.41294 -16.03500 -15.57070 -15.46898 -15.22070 -14.91675 -14.78279 -14.37190 -14.34156 -14.16672 -13.89708 -13.62743 -13.43320 -13.27346 -13.10765 -12.98956 -12.87460 -12.79509 -12.67104 -12.44609 -12.29032 -12.18055 -12.11243 -11.94141 -11.84446 -11.63170 -11.56152 -11.46363 -11.45597 -11.37074 -11.18504 -10.75821 -10.41406 -10.38609 -10.17943 -9.72746 -7.99287 -6.17567 -0.40537 1.42434 1.44662 1.54634 1.91910 2.45473 3.00716 3.06591 3.22527 3.42355 3.49538 3.81582 3.89801 3.97202 4.06866 4.12389 4.18133 4.28654 4.32392 4.36717 4.43892 4.55083 4.65176 4.67965 4.72056 4.75633 4.78826 4.90501 4.92470 4.95580 4.99090 5.03581 5.09256 5.12846 5.16062 5.19217 5.22140 5.27886 5.34399 5.37298 5.47175 5.49415 5.57409 5.60340 5.67070 5.89326 6.02460 6.16695 6.39467 6.41421 6.87102 7.49868 9.00731 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018269 B = 0.004725 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.303083 B = 5924.975204 C = 6408.446842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.077 3.923 3 C -0.141 4.141 4 C -0.508 4.508 5 H 0.060 0.940 6 C 0.016 3.984 7 N -0.910 5.910 8 Si 0.953 3.047 9 H -0.264 1.264 10 H -0.285 1.285 11 H -0.283 1.283 12 C -0.593 4.593 13 S 2.608 3.392 14 O -1.014 7.014 15 O -0.966 6.966 16 N -0.986 5.986 17 C 0.105 3.895 18 C -0.130 4.130 19 C -0.111 4.111 20 C -0.117 4.117 21 C 0.148 3.852 22 C -0.118 4.118 23 C -0.176 4.176 24 C 0.030 3.970 25 O -0.391 6.391 26 C 0.021 3.979 27 H 0.025 0.975 28 H 0.070 0.930 29 H 0.033 0.967 30 H 0.040 0.960 31 H 0.061 0.939 32 H 0.026 0.974 33 H 0.259 0.741 34 H 0.163 0.837 35 H 0.109 0.891 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.049 0.951 39 H 0.094 0.906 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.100 0.900 43 H 0.056 0.944 44 H 0.091 0.909 45 H 0.099 0.901 46 H 0.063 0.937 47 H 0.097 0.903 48 H 0.079 0.921 49 H 0.085 0.915 50 H 0.083 0.917 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.504 -7.844 19.715 23.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.075 3.925 3 C -0.199 4.199 4 C -0.548 4.548 5 H 0.078 0.922 6 C -0.183 4.183 7 N -0.550 5.550 8 Si 0.779 3.221 9 H -0.188 1.188 10 H -0.211 1.211 11 H -0.209 1.209 12 C -0.725 4.725 13 S 2.710 3.290 14 O -1.004 7.004 15 O -0.956 6.956 16 N -0.825 5.825 17 C -0.019 4.019 18 C -0.169 4.169 19 C -0.149 4.149 20 C -0.157 4.157 21 C 0.061 3.939 22 C -0.157 4.157 23 C -0.214 4.214 24 C -0.046 4.046 25 O -0.310 6.310 26 C -0.057 4.057 27 H 0.043 0.957 28 H 0.088 0.912 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.045 0.955 33 H 0.069 0.931 34 H 0.180 0.820 35 H 0.127 0.873 36 H 0.091 0.909 37 H 0.107 0.893 38 H 0.068 0.932 39 H 0.113 0.887 40 H 0.099 0.901 41 H 0.101 0.899 42 H 0.119 0.881 43 H 0.075 0.925 44 H 0.109 0.891 45 H 0.117 0.883 46 H 0.082 0.918 47 H 0.116 0.884 48 H 0.097 0.903 49 H 0.103 0.897 50 H 0.101 0.899 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 8.734 -6.854 19.537 22.472 hybrid contribution 0.165 -0.667 -1.604 1.745 sum 8.899 -7.521 17.933 21.386 Atomic orbital electron populations 1.22218 0.98770 0.99859 1.00839 1.17818 0.91319 0.92345 0.90992 1.21999 0.99743 0.97965 1.00211 1.21287 1.31155 1.11901 0.90409 0.92182 1.25682 0.95298 0.95670 1.01635 1.69974 1.37508 1.23919 1.23562 0.85586 0.78031 0.78777 0.79707 1.18803 1.21077 1.20935 1.31027 1.14710 1.11044 1.15709 1.04881 0.72543 0.75869 0.75684 1.93428 1.32937 1.87511 1.86544 1.93485 1.75978 1.41079 1.85077 1.57582 1.24945 1.51645 1.48317 1.21665 0.95270 0.90357 0.94645 1.21878 0.98615 1.02519 0.93879 1.21509 0.94656 0.98546 1.00151 1.21827 1.02775 0.99360 0.91694 1.21171 0.80854 0.96181 0.95694 1.22005 1.00296 0.98209 0.95170 1.22539 1.03118 0.98557 0.97152 1.22881 0.94110 0.86755 1.00863 1.88309 1.66032 1.52484 1.24183 1.23788 1.02827 0.98171 0.80884 0.95656 0.91153 0.94735 0.94130 0.92031 0.95541 0.93104 0.81979 0.87267 0.90866 0.89324 0.93231 0.88735 0.90077 0.89875 0.88144 0.92533 0.89095 0.88259 0.91836 0.88408 0.90283 0.89691 0.89886 0.85412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -8.51 7.78 71.98 0.56 -7.95 16 2 C 0.08 3.95 0.52 -52.92 -0.03 3.92 16 3 C -0.14 -7.48 7.78 71.98 0.56 -6.92 16 4 C -0.51 -27.41 8.01 25.60 0.21 -27.21 16 5 H 0.06 3.11 7.74 -2.91 -0.02 3.09 16 6 C 0.02 0.87 5.15 84.65 0.44 1.31 16 7 N -0.91 -52.31 9.35 21.44 0.20 -52.11 16 8 Si 0.95 43.17 29.54 68.60 2.03 45.20 16 9 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 12 C -0.59 -24.66 2.86 71.98 0.21 -24.45 16 13 S 2.61 103.62 3.81 -56.49 -0.22 103.40 16 14 O -1.01 -46.46 14.09 -127.65 -1.80 -48.26 16 15 O -0.97 -41.29 9.73 -118.42 -1.15 -42.44 16 16 N -0.99 -27.53 2.35 -469.76 -1.10 -28.63 16 17 C 0.11 2.43 6.04 86.36 0.52 2.95 16 18 C -0.13 -2.27 6.08 30.67 0.19 -2.09 16 19 C -0.11 -1.44 5.68 30.63 0.17 -1.27 16 20 C -0.12 -1.90 4.85 30.63 0.15 -1.75 16 21 C 0.15 3.22 0.68 3.59 0.00 3.22 16 22 C -0.12 -1.91 4.48 30.72 0.14 -1.77 16 23 C -0.18 -3.70 5.60 30.69 0.17 -3.53 16 24 C 0.03 0.77 5.58 72.01 0.40 1.17 16 25 O -0.39 -12.75 6.39 -125.72 -0.80 -13.55 16 26 C 0.02 0.57 4.65 71.95 0.33 0.90 16 27 H 0.02 1.31 5.46 -2.39 -0.01 1.30 16 28 H 0.07 4.06 6.07 -2.39 -0.01 4.04 16 29 H 0.03 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.06 3.54 6.07 -2.39 -0.01 3.52 16 32 H 0.03 1.35 5.46 -2.39 -0.01 1.34 16 33 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 34 H 0.16 6.17 2.48 -2.39 -0.01 6.17 16 35 H 0.11 4.25 7.87 -2.39 -0.02 4.23 16 36 H 0.07 2.01 6.75 -2.39 -0.02 2.00 16 37 H 0.09 1.57 7.41 -2.39 -0.02 1.55 16 38 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 40 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.08 0.83 6.59 -2.39 -0.02 0.81 16 42 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 44 H 0.09 1.20 5.77 -2.38 -0.01 1.18 16 45 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.06 1.62 4.77 -2.39 -0.01 1.61 16 47 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 48 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 49 H 0.08 2.45 7.69 -2.39 -0.02 2.43 16 50 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 51 H 0.13 4.16 5.49 -38.10 -0.21 3.95 16 Total: -1.00 -71.10 355.82 1.90 -69.20 By element: Atomic # 1 Polarization: 29.93 SS G_CDS: 0.73 Total: 30.66 kcal Atomic # 6 Polarization: -67.48 SS G_CDS: 4.02 Total: -63.47 kcal Atomic # 7 Polarization: -79.84 SS G_CDS: -0.90 Total: -80.74 kcal Atomic # 8 Polarization: -100.50 SS G_CDS: -3.75 Total: -104.25 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Atomic # 16 Polarization: 103.62 SS G_CDS: -0.22 Total: 103.40 kcal Total: -71.10 1.90 -69.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001424958850.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.714 kcal (2) G-P(sol) polarization free energy of solvation -71.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds