Wall clock time and date at job start Sat Apr 11 2020 07:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46508 * 120.00015 * 2 1 4 4 C 1.34779 * 119.99968 * 180.02562 * 2 1 3 5 5 O 1.21276 * 120.00130 * 359.97438 * 4 2 1 6 6 C 1.50702 * 119.99738 * 180.02562 * 4 2 1 7 7 C 1.53003 * 109.47072 * 180.02562 * 6 4 2 8 8 C 1.52999 * 109.47080 * 180.02562 * 7 6 4 9 9 C 1.53001 * 109.46947 * 299.99454 * 8 7 6 10 10 C 1.50700 * 109.47079 * 180.02562 * 9 8 7 11 11 O 1.21277 * 119.99794 * 342.06943 * 10 9 8 12 12 N 1.34774 * 120.00120 * 162.07007 * 10 9 8 13 13 C 1.37211 * 119.99986 * 5.14524 * 12 10 9 14 14 H 1.07999 * 120.00277 * 311.98791 * 13 12 10 15 15 C 1.38895 * 120.00050 * 131.98392 * 13 12 10 16 16 N 1.31405 * 120.00033 * 169.37032 * 15 13 12 17 17 Si 1.86800 * 120.00042 * 349.37176 * 15 13 12 18 18 H 1.48504 * 109.47001 * 90.78735 * 17 15 13 19 19 H 1.48498 * 109.47267 * 210.78944 * 17 15 13 20 20 H 1.48505 * 109.46903 * 330.79316 * 17 15 13 21 21 C 1.39429 * 120.00137 * 185.14862 * 12 10 9 22 22 C 1.39061 * 119.69676 * 166.73363 * 21 12 10 23 23 C 1.38382 * 119.09622 * 180.02562 * 22 21 12 24 24 C 1.38823 * 118.49337 * 359.97438 * 23 22 21 25 25 C 1.38146 * 119.31435 * 0.25397 * 24 23 22 26 26 N 1.31882 * 120.84728 * 359.47578 * 25 24 23 27 27 C 1.52999 * 109.47197 * 60.00038 * 9 8 7 28 28 C 1.52999 * 109.47275 * 300.00386 * 27 9 8 29 29 H 1.08999 * 109.47081 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47412 * 300.00162 * 1 2 3 31 31 H 1.09000 * 109.47142 * 60.00236 * 1 2 3 32 32 H 1.09003 * 109.47254 * 269.99970 * 3 2 1 33 33 H 1.08999 * 109.46597 * 29.99914 * 3 2 1 34 34 H 1.08995 * 109.46717 * 149.99798 * 3 2 1 35 35 H 1.08996 * 109.47676 * 59.99918 * 6 4 2 36 36 H 1.08996 * 109.47088 * 59.99373 * 7 6 4 37 37 H 1.09005 * 109.46277 * 299.99810 * 7 6 4 38 38 H 1.09008 * 109.46565 * 179.97438 * 8 7 6 39 39 H 1.08993 * 109.47295 * 59.99552 * 8 7 6 40 40 H 1.09002 * 109.47018 * 299.99957 * 9 8 7 41 41 H 0.96999 * 120.00388 * 179.97438 * 16 15 13 42 42 H 1.08000 * 120.45352 * 359.97438 * 22 21 12 43 43 H 1.08004 * 120.75454 * 180.02562 * 23 22 21 44 44 H 1.07998 * 120.34295 * 179.97438 * 24 23 22 45 45 H 1.07995 * 119.57927 * 179.74334 * 25 24 23 46 46 H 1.09009 * 109.46552 * 60.00066 * 27 9 8 47 47 H 1.08996 * 109.47043 * 179.97438 * 27 9 8 48 48 H 1.09002 * 109.46716 * 299.99943 * 28 27 9 49 49 H 1.09000 * 109.46929 * 180.02562 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1388 -1.1672 -0.0005 5 8 1.5325 -2.2175 -0.0005 6 6 3.6458 -1.1672 0.0001 7 6 4.1559 -2.6097 -0.0014 8 6 5.6859 -2.6096 -0.0001 9 6 6.1968 -1.8869 -1.2481 10 6 7.7038 -1.8873 -1.2473 11 8 8.3095 -2.1085 -0.2201 12 7 8.3785 -1.6420 -2.3879 13 6 7.6973 -1.2881 -3.5252 14 1 6.8342 -1.8574 -3.8370 15 6 8.1179 -0.1975 -4.2756 16 7 7.6041 0.0186 -5.4656 17 14 9.4137 0.9620 -3.5930 18 1 10.7619 0.4951 -4.0050 19 1 9.1810 2.3303 -4.1209 20 1 9.3284 0.9820 -2.1106 21 6 9.7685 -1.7478 -2.4123 22 6 10.4365 -1.7687 -3.6317 23 6 11.8163 -1.8747 -3.6414 24 6 12.4828 -1.9559 -2.4264 25 6 11.7546 -1.9341 -1.2527 26 7 10.4403 -1.8271 -1.2742 27 6 5.6868 -0.4444 -1.2468 28 6 4.1568 -0.4444 -1.2479 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 2.3792 1.5835 -1.0277 33 1 1.6083 2.0284 0.5138 34 1 3.1498 1.1384 0.5139 35 1 4.0089 -0.6539 0.8905 36 1 3.7928 -3.1225 -0.8920 37 1 3.7922 -3.1244 0.8880 38 1 6.0492 -3.6374 -0.0007 39 1 6.0485 -2.0969 0.8907 40 1 5.8342 -2.3997 -2.1390 41 1 7.8975 0.7805 -5.9894 42 1 9.8860 -1.7040 -4.5586 43 1 12.3622 -1.8930 -4.5731 44 1 13.5592 -2.0398 -2.3992 45 1 12.2684 -2.0012 -0.3052 46 1 6.0495 0.0684 -0.3559 47 1 6.0511 0.0706 -2.1357 48 1 3.7942 -0.9573 -2.1388 49 1 3.7935 0.5833 -1.2475 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892472599.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:36:13 Heat of formation + Delta-G solvation = -14.577748 kcal Electronic energy + Delta-G solvation = -31598.182110 eV Core-core repulsion = 27526.014670 eV Total energy + Delta-G solvation = -4072.167440 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.55755 -40.06945 -38.58388 -36.73836 -35.66995 -35.18879 -32.38511 -31.61556 -31.36254 -30.53529 -29.35822 -28.01904 -26.45744 -25.39564 -24.01714 -22.68225 -22.26469 -22.01013 -20.13123 -19.14909 -19.06958 -18.15186 -16.92228 -16.46749 -16.20437 -15.97344 -15.73027 -15.47670 -14.99920 -14.84640 -14.19996 -14.00912 -13.90378 -13.83355 -13.67104 -13.16551 -13.08833 -12.94364 -12.75539 -12.61623 -12.44153 -12.37912 -12.33825 -12.09947 -11.84194 -11.63973 -11.46291 -11.10358 -11.08616 -10.90958 -10.83688 -10.69908 -10.26238 -10.03684 -9.79967 -9.61597 -9.60017 -9.25205 -9.11464 -8.79901 -8.67828 -8.17614 -7.33802 -6.65608 -4.47283 1.81728 2.03006 2.62956 2.93893 3.04361 3.15695 3.26192 3.62004 3.92966 4.03674 4.46136 4.53518 4.81493 4.88034 4.93825 4.96874 5.11715 5.15276 5.22182 5.35296 5.42989 5.45396 5.47520 5.49704 5.57102 5.62017 5.66788 5.75394 5.75956 5.82051 5.84924 5.93488 6.03345 6.20248 6.26786 6.29081 6.32810 6.39358 6.48975 6.50166 6.53285 6.69702 6.81230 6.84893 6.90074 7.12707 7.23641 7.48260 7.89421 8.04830 8.14581 8.56633 8.79252 9.10335 9.50667 10.39555 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017093 B = 0.003321 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.657363 B = 8430.205591 C = 9338.340326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.625 5.625 3 C 0.075 3.925 4 C 0.520 3.480 5 O -0.542 6.542 6 C -0.106 4.106 7 C -0.094 4.094 8 C -0.101 4.101 9 C -0.086 4.086 10 C 0.501 3.499 11 O -0.516 6.516 12 N -0.408 5.408 13 C -0.356 4.356 14 H 0.115 0.885 15 C 0.086 3.914 16 N -0.853 5.853 17 Si 0.852 3.148 18 H -0.250 1.250 19 H -0.284 1.284 20 H -0.260 1.260 21 C 0.352 3.648 22 C -0.196 4.196 23 C -0.063 4.063 24 C -0.235 4.235 25 C 0.116 3.884 26 N -0.488 5.488 27 C -0.103 4.103 28 C -0.116 4.116 29 H 0.085 0.915 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.096 0.904 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.095 0.905 41 H 0.279 0.721 42 H 0.149 0.851 43 H 0.124 0.876 44 H 0.121 0.879 45 H 0.145 0.855 46 H 0.058 0.942 47 H 0.093 0.907 48 H 0.071 0.929 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.731 3.248 6.185 9.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.359 5.359 3 C -0.068 4.068 4 C 0.309 3.691 5 O -0.419 6.419 6 C -0.127 4.127 7 C -0.132 4.132 8 C -0.139 4.139 9 C -0.107 4.107 10 C 0.290 3.710 11 O -0.390 6.390 12 N -0.121 5.121 13 C -0.483 4.483 14 H 0.133 0.867 15 C -0.124 4.124 16 N -0.486 5.486 17 Si 0.677 3.323 18 H -0.175 1.175 19 H -0.211 1.211 20 H -0.185 1.185 21 C 0.123 3.877 22 C -0.219 4.219 23 C -0.089 4.089 24 C -0.258 4.258 25 C -0.043 4.043 26 N -0.204 5.204 27 C -0.140 4.140 28 C -0.153 4.153 29 H 0.104 0.896 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.114 0.886 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.113 0.887 41 H 0.090 0.910 42 H 0.167 0.833 43 H 0.142 0.858 44 H 0.139 0.861 45 H 0.163 0.837 46 H 0.077 0.923 47 H 0.112 0.888 48 H 0.090 0.910 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.391 2.717 7.337 10.102 hybrid contribution 1.158 0.944 -0.860 1.724 sum -5.233 3.661 6.477 9.096 Atomic orbital electron populations 1.21646 0.79674 1.04061 1.00966 1.47743 1.06930 1.06671 1.74605 1.22001 0.97438 0.85052 1.02318 1.20961 0.90557 0.82876 0.74676 1.90657 1.70470 1.31069 1.49678 1.21407 0.90138 0.99951 1.01167 1.21337 0.95183 0.93660 1.03027 1.21417 0.93779 1.00838 0.97893 1.21063 0.91685 0.98123 0.99805 1.20971 0.89942 0.77497 0.82589 1.90657 1.70144 1.47068 1.31178 1.41683 1.00951 1.58542 1.10956 1.19036 1.14270 1.13541 1.01455 0.86739 1.25355 0.96392 0.96012 0.94672 1.69660 1.41452 1.28728 1.08774 0.87285 0.83193 0.80544 0.81232 1.17492 1.21068 1.18454 1.19141 0.86891 0.92772 0.88943 1.21760 0.94765 1.05914 0.99500 1.21250 0.93800 0.95896 0.97928 1.21779 1.00397 1.09735 0.93851 1.22474 0.89331 0.94931 0.97582 1.67693 1.08537 1.15884 1.28294 1.21405 0.93536 0.95454 1.03653 1.21779 0.96712 1.00498 0.96318 0.89626 0.92533 0.92403 0.91752 0.91331 0.90286 0.88625 0.91180 0.91493 0.91599 0.91188 0.88672 0.91003 0.83304 0.85777 0.86101 0.83744 0.92326 0.88849 0.91040 0.90707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.73 10.68 59.84 0.64 1.37 16 2 N -0.62 -6.87 3.27 -189.52 -0.62 -7.49 16 3 C 0.07 0.61 8.85 59.85 0.53 1.14 16 4 C 0.52 7.19 7.08 -10.98 -0.08 7.11 16 5 O -0.54 -9.26 15.31 5.56 0.09 -9.18 16 6 C -0.11 -1.37 1.72 -91.77 -0.16 -1.53 16 7 C -0.09 -1.35 4.49 -26.73 -0.12 -1.47 16 8 C -0.10 -1.63 4.65 -26.73 -0.12 -1.75 16 9 C -0.09 -1.56 1.81 -91.77 -0.17 -1.73 16 10 C 0.50 11.34 6.80 -10.99 -0.07 11.27 16 11 O -0.52 -12.76 14.34 5.56 0.08 -12.68 16 12 N -0.41 -9.72 2.31 -60.71 -0.14 -9.86 16 13 C -0.36 -8.55 6.88 -14.90 -0.10 -8.65 16 14 H 0.12 2.84 7.12 -52.49 -0.37 2.46 16 15 C 0.09 2.09 4.20 -17.49 -0.07 2.02 16 16 N -0.85 -21.51 13.96 55.49 0.77 -20.73 16 17 Si 0.85 19.85 24.42 -169.99 -4.15 15.70 16 18 H -0.25 -5.67 5.62 56.52 0.32 -5.35 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 20 H -0.26 -6.58 7.11 56.52 0.40 -6.18 16 21 C 0.35 8.38 5.11 -154.64 -0.79 7.60 16 22 C -0.20 -4.28 5.87 -39.22 -0.23 -4.51 16 23 C -0.06 -1.16 9.68 -39.31 -0.38 -1.54 16 24 C -0.24 -4.05 10.11 -39.40 -0.40 -4.45 16 25 C 0.12 2.23 11.18 -17.56 -0.20 2.03 16 26 N -0.49 -11.46 7.98 -12.34 -0.10 -11.56 16 27 C -0.10 -1.69 5.09 -26.73 -0.14 -1.83 16 28 C -0.12 -1.54 4.84 -26.73 -0.13 -1.67 16 29 H 0.09 0.94 6.90 -51.93 -0.36 0.58 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.51 6.95 -51.93 -0.36 0.14 16 33 H 0.07 0.42 8.07 -51.93 -0.42 0.00 16 34 H 0.08 0.62 6.00 -51.93 -0.31 0.31 16 35 H 0.10 1.11 7.40 -51.93 -0.38 0.73 16 36 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 37 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 38 H 0.07 1.09 8.14 -51.92 -0.42 0.67 16 39 H 0.07 1.15 7.91 -51.93 -0.41 0.74 16 40 H 0.10 1.76 7.02 -51.93 -0.36 1.40 16 41 H 0.28 6.66 8.31 -40.82 -0.34 6.32 16 42 H 0.15 3.39 5.96 -52.49 -0.31 3.07 16 43 H 0.12 1.90 8.06 -52.48 -0.42 1.47 16 44 H 0.12 1.63 8.06 -52.49 -0.42 1.20 16 45 H 0.15 2.28 8.06 -52.49 -0.42 1.86 16 46 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 47 H 0.09 1.76 6.85 -51.93 -0.36 1.40 16 48 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 49 H 0.07 0.84 4.53 -51.93 -0.24 0.60 16 LS Contribution 374.55 15.07 5.64 5.64 Total: -1.00 -31.41 374.55 -7.74 -39.15 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -7.33 Total: 7.61 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -1.99 Total: 3.39 kcal Atomic # 7 Polarization: -49.56 SS G_CDS: -0.08 Total: -49.64 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: 0.16 Total: -21.86 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -4.15 Total: 15.70 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.41 -7.74 -39.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892472599.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.572 kcal (2) G-P(sol) polarization free energy of solvation -31.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds