Wall clock time and date at job start Sat Apr 11 2020 07:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46508 * 120.00015 * 2 1 4 4 C 1.34779 * 119.99968 * 180.02562 * 2 1 3 5 5 O 1.21276 * 120.00130 * 359.97438 * 4 2 1 6 6 C 1.50702 * 119.99738 * 180.02562 * 4 2 1 7 7 C 1.53003 * 109.47072 * 180.02562 * 6 4 2 8 8 C 1.52999 * 109.47080 * 180.02562 * 7 6 4 9 9 C 1.53001 * 109.46947 * 299.99454 * 8 7 6 10 10 C 1.50700 * 109.47079 * 180.02562 * 9 8 7 11 11 O 1.21277 * 119.99794 * 342.06943 * 10 9 8 12 12 N 1.34774 * 120.00120 * 162.07007 * 10 9 8 13 13 C 1.37211 * 119.99986 * 5.14524 * 12 10 9 14 14 H 1.07999 * 120.00277 * 311.98791 * 13 12 10 15 15 C 1.38895 * 120.00050 * 131.98392 * 13 12 10 16 16 N 1.31405 * 120.00033 * 169.37032 * 15 13 12 17 17 Si 1.86800 * 120.00042 * 349.37176 * 15 13 12 18 18 H 1.48504 * 109.47001 * 90.78735 * 17 15 13 19 19 H 1.48498 * 109.47267 * 210.78944 * 17 15 13 20 20 H 1.48505 * 109.46903 * 330.79316 * 17 15 13 21 21 C 1.39429 * 120.00137 * 185.14862 * 12 10 9 22 22 C 1.39061 * 119.69676 * 166.73363 * 21 12 10 23 23 C 1.38382 * 119.09622 * 180.02562 * 22 21 12 24 24 C 1.38823 * 118.49337 * 359.97438 * 23 22 21 25 25 C 1.38146 * 119.31435 * 0.25397 * 24 23 22 26 26 N 1.31882 * 120.84728 * 359.47578 * 25 24 23 27 27 C 1.52999 * 109.47197 * 60.00038 * 9 8 7 28 28 C 1.52999 * 109.47275 * 300.00386 * 27 9 8 29 29 H 1.08999 * 109.47081 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47412 * 300.00162 * 1 2 3 31 31 H 1.09000 * 109.47142 * 60.00236 * 1 2 3 32 32 H 1.09003 * 109.47254 * 269.99970 * 3 2 1 33 33 H 1.08999 * 109.46597 * 29.99914 * 3 2 1 34 34 H 1.08995 * 109.46717 * 149.99798 * 3 2 1 35 35 H 1.08996 * 109.47676 * 59.99918 * 6 4 2 36 36 H 1.08996 * 109.47088 * 59.99373 * 7 6 4 37 37 H 1.09005 * 109.46277 * 299.99810 * 7 6 4 38 38 H 1.09008 * 109.46565 * 179.97438 * 8 7 6 39 39 H 1.08993 * 109.47295 * 59.99552 * 8 7 6 40 40 H 1.09002 * 109.47018 * 299.99957 * 9 8 7 41 41 H 0.96999 * 120.00388 * 179.97438 * 16 15 13 42 42 H 1.08000 * 120.45352 * 359.97438 * 22 21 12 43 43 H 1.08004 * 120.75454 * 180.02562 * 23 22 21 44 44 H 1.07998 * 120.34295 * 179.97438 * 24 23 22 45 45 H 1.07995 * 119.57927 * 179.74334 * 25 24 23 46 46 H 1.09009 * 109.46552 * 60.00066 * 27 9 8 47 47 H 1.08996 * 109.47043 * 179.97438 * 27 9 8 48 48 H 1.09002 * 109.46716 * 299.99943 * 28 27 9 49 49 H 1.09000 * 109.46929 * 180.02562 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1388 -1.1672 -0.0005 5 8 1.5325 -2.2175 -0.0005 6 6 3.6458 -1.1672 0.0001 7 6 4.1559 -2.6097 -0.0014 8 6 5.6859 -2.6096 -0.0001 9 6 6.1968 -1.8869 -1.2481 10 6 7.7038 -1.8873 -1.2473 11 8 8.3095 -2.1085 -0.2201 12 7 8.3785 -1.6420 -2.3879 13 6 7.6973 -1.2881 -3.5252 14 1 6.8342 -1.8574 -3.8370 15 6 8.1179 -0.1975 -4.2756 16 7 7.6041 0.0186 -5.4656 17 14 9.4137 0.9620 -3.5930 18 1 10.7619 0.4951 -4.0050 19 1 9.1810 2.3303 -4.1209 20 1 9.3284 0.9820 -2.1106 21 6 9.7685 -1.7478 -2.4123 22 6 10.4365 -1.7687 -3.6317 23 6 11.8163 -1.8747 -3.6414 24 6 12.4828 -1.9559 -2.4264 25 6 11.7546 -1.9341 -1.2527 26 7 10.4403 -1.8271 -1.2742 27 6 5.6868 -0.4444 -1.2468 28 6 4.1568 -0.4444 -1.2479 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 2.3792 1.5835 -1.0277 33 1 1.6083 2.0284 0.5138 34 1 3.1498 1.1384 0.5139 35 1 4.0089 -0.6539 0.8905 36 1 3.7928 -3.1225 -0.8920 37 1 3.7922 -3.1244 0.8880 38 1 6.0492 -3.6374 -0.0007 39 1 6.0485 -2.0969 0.8907 40 1 5.8342 -2.3997 -2.1390 41 1 7.8975 0.7805 -5.9894 42 1 9.8860 -1.7040 -4.5586 43 1 12.3622 -1.8930 -4.5731 44 1 13.5592 -2.0398 -2.3992 45 1 12.2684 -2.0012 -0.3052 46 1 6.0495 0.0684 -0.3559 47 1 6.0511 0.0706 -2.1357 48 1 3.7942 -0.9573 -2.1388 49 1 3.7935 0.5833 -1.2475 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892472599.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:36:11 Heat of formation + Delta-G solvation = -33.408677 kcal Electronic energy + Delta-G solvation = -31598.998680 eV Core-core repulsion = 27526.014670 eV Total energy + Delta-G solvation = -4072.984010 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.03468 -41.34499 -40.10461 -38.10209 -36.97979 -36.61467 -34.20983 -33.20507 -32.71579 -31.80539 -30.87512 -28.80705 -27.46583 -27.16363 -25.38941 -24.17307 -23.57882 -23.43962 -21.47639 -20.81878 -20.15005 -19.76361 -18.15888 -17.91071 -17.70648 -17.20634 -17.06578 -16.78721 -16.51119 -16.16240 -15.91733 -15.53720 -15.29333 -15.07011 -14.88129 -14.84685 -14.54191 -14.20305 -14.06994 -13.86863 -13.76006 -13.50949 -13.38402 -13.26461 -13.07849 -12.98219 -12.87136 -12.67477 -12.53958 -12.40401 -12.23616 -12.07546 -11.97778 -11.45191 -11.38815 -11.04054 -10.95835 -10.88098 -10.61791 -10.39255 -9.83841 -9.65431 -9.04809 -8.55726 -6.37680 0.23587 0.47892 1.18398 1.26401 1.36209 1.57950 1.90129 2.08322 2.11990 2.32650 2.75595 3.17399 3.43094 3.66702 3.70276 3.76080 4.01112 4.06441 4.17363 4.22414 4.24682 4.31393 4.39669 4.40895 4.45853 4.46685 4.52527 4.53219 4.55600 4.59431 4.76893 4.85019 4.90361 4.95713 4.96207 4.96629 5.07663 5.12333 5.17169 5.21437 5.25592 5.35890 5.43329 5.45139 5.49648 5.54654 5.85092 6.00759 6.25107 6.32221 6.78718 7.02841 7.14184 7.34006 7.75450 8.52476 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017093 B = 0.003321 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.657363 B = 8430.205591 C = 9338.340326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.621 5.621 3 C 0.065 3.935 4 C 0.516 3.484 5 O -0.583 6.583 6 C -0.099 4.099 7 C -0.086 4.086 8 C -0.089 4.089 9 C -0.081 4.081 10 C 0.490 3.510 11 O -0.544 6.544 12 N -0.422 5.422 13 C -0.346 4.346 14 H 0.097 0.903 15 C 0.070 3.930 16 N -0.880 5.880 17 Si 0.895 3.105 18 H -0.238 1.238 19 H -0.280 1.280 20 H -0.292 1.292 21 C 0.320 3.680 22 C -0.216 4.216 23 C -0.061 4.061 24 C -0.211 4.211 25 C 0.102 3.898 26 N -0.524 5.524 27 C -0.095 4.095 28 C -0.104 4.104 29 H 0.063 0.937 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.117 0.883 36 H 0.057 0.943 37 H 0.072 0.928 38 H 0.056 0.944 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.284 0.716 42 H 0.133 0.867 43 H 0.162 0.838 44 H 0.172 0.828 45 H 0.178 0.822 46 H 0.064 0.936 47 H 0.067 0.933 48 H 0.058 0.942 49 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.485 4.640 6.780 9.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.354 5.354 3 C -0.077 4.077 4 C 0.306 3.694 5 O -0.463 6.463 6 C -0.120 4.120 7 C -0.124 4.124 8 C -0.127 4.127 9 C -0.102 4.102 10 C 0.281 3.719 11 O -0.421 6.421 12 N -0.137 5.137 13 C -0.472 4.472 14 H 0.115 0.885 15 C -0.138 4.138 16 N -0.515 5.515 17 Si 0.721 3.279 18 H -0.162 1.162 19 H -0.206 1.206 20 H -0.219 1.219 21 C 0.092 3.908 22 C -0.239 4.239 23 C -0.087 4.087 24 C -0.232 4.232 25 C -0.056 4.056 26 N -0.241 5.241 27 C -0.133 4.133 28 C -0.141 4.141 29 H 0.082 0.918 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.114 0.886 34 H 0.102 0.898 35 H 0.135 0.865 36 H 0.076 0.924 37 H 0.091 0.909 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.103 0.897 41 H 0.095 0.905 42 H 0.151 0.849 43 H 0.179 0.821 44 H 0.189 0.811 45 H 0.195 0.805 46 H 0.082 0.918 47 H 0.085 0.915 48 H 0.077 0.923 49 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -5.128 4.146 7.906 10.295 hybrid contribution 0.926 0.464 -0.999 1.439 sum -4.203 4.611 6.907 9.307 Atomic orbital electron populations 1.21789 0.78591 1.03313 1.02980 1.47870 1.07851 1.06785 1.72899 1.22245 0.97997 0.84228 1.03185 1.20973 0.90605 0.83225 0.74624 1.90642 1.71088 1.32666 1.51943 1.21328 0.90136 0.98886 1.01671 1.21226 0.93534 0.94947 1.02713 1.21308 0.94955 0.99884 0.96598 1.21098 0.89044 0.99649 1.00443 1.21677 0.91505 0.76695 0.82050 1.90610 1.71093 1.48584 1.31825 1.41808 1.01644 1.59240 1.10959 1.18808 1.13805 1.13180 1.01454 0.88503 1.25555 0.97155 0.96462 0.94628 1.69689 1.42728 1.29579 1.09511 0.86666 0.82955 0.79766 0.78492 1.16210 1.20579 1.21870 1.19365 0.86857 0.94652 0.89924 1.21775 0.96461 1.07587 0.98106 1.21769 0.92510 0.94066 1.00309 1.22298 1.02725 1.05913 0.92251 1.23182 0.88263 0.94082 1.00109 1.67643 1.10780 1.16912 1.28733 1.21311 0.95689 0.93730 1.02563 1.21690 0.94138 1.02170 0.96104 0.91771 0.90113 0.90720 0.91201 0.88575 0.89825 0.86546 0.92391 0.90926 0.92542 0.91264 0.89652 0.90550 0.84945 0.82052 0.81056 0.80542 0.91768 0.91467 0.92310 0.87911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.25 10.68 127.77 1.37 2.62 16 2 N -0.62 -12.44 3.27 -871.90 -2.85 -15.29 16 3 C 0.07 0.86 8.85 127.77 1.13 1.99 16 4 C 0.52 13.85 7.08 87.66 0.62 14.47 16 5 O -0.58 -20.06 15.31 -3.02 -0.05 -20.10 16 6 C -0.10 -2.50 1.72 -11.54 -0.02 -2.52 16 7 C -0.09 -2.50 4.49 30.59 0.14 -2.37 16 8 C -0.09 -2.96 4.65 30.59 0.14 -2.82 16 9 C -0.08 -3.10 1.81 -11.54 -0.02 -3.12 16 10 C 0.49 23.14 6.80 87.66 0.60 23.74 16 11 O -0.54 -27.83 14.34 -3.02 -0.04 -27.88 16 12 N -0.42 -20.89 2.31 -464.37 -1.07 -21.96 16 13 C -0.35 -17.29 6.88 84.01 0.58 -16.71 16 14 H 0.10 5.09 7.12 -2.91 -0.02 5.07 16 15 C 0.07 3.47 4.20 84.91 0.36 3.83 16 16 N -0.88 -45.12 13.96 21.65 0.30 -44.82 16 17 Si 0.90 41.48 24.42 68.60 1.68 43.15 16 18 H -0.24 -10.39 5.62 99.48 0.56 -9.83 16 19 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 20 H -0.29 -15.07 7.11 99.48 0.71 -14.37 16 21 C 0.32 15.44 5.11 132.90 0.68 16.12 16 22 C -0.22 -9.34 5.87 22.50 0.13 -9.20 16 23 C -0.06 -2.06 9.68 22.44 0.22 -1.85 16 24 C -0.21 -6.36 10.11 22.39 0.23 -6.14 16 25 C 0.10 3.67 11.18 84.66 0.95 4.62 16 26 N -0.52 -24.54 7.98 -192.96 -1.54 -26.07 16 27 C -0.10 -3.19 5.09 30.59 0.16 -3.04 16 28 C -0.10 -2.72 4.84 30.59 0.15 -2.57 16 29 H 0.06 1.37 6.90 -2.39 -0.02 1.35 16 30 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.07 0.89 6.95 -2.39 -0.02 0.87 16 33 H 0.10 0.79 8.07 -2.39 -0.02 0.77 16 34 H 0.08 1.06 6.00 -2.39 -0.01 1.04 16 35 H 0.12 2.48 7.40 -2.39 -0.02 2.46 16 36 H 0.06 1.82 8.10 -2.39 -0.02 1.80 16 37 H 0.07 2.04 8.10 -2.38 -0.02 2.02 16 38 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 39 H 0.07 2.30 7.91 -2.39 -0.02 2.28 16 40 H 0.09 3.39 7.02 -2.39 -0.02 3.37 16 41 H 0.28 13.64 8.31 -92.71 -0.77 12.87 16 42 H 0.13 6.10 5.96 -2.91 -0.02 6.09 16 43 H 0.16 4.21 8.06 -2.91 -0.02 4.18 16 44 H 0.17 3.48 8.06 -2.91 -0.02 3.46 16 45 H 0.18 5.00 8.06 -2.91 -0.02 4.98 16 46 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 47 H 0.07 2.63 6.85 -2.39 -0.02 2.61 16 48 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 49 H 0.10 2.13 4.53 -2.39 -0.01 2.12 16 Total: -1.00 -71.59 374.55 4.62 -66.97 By element: Atomic # 1 Polarization: 28.14 SS G_CDS: 0.81 Total: 28.95 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: 7.39 Total: 17.06 kcal Atomic # 7 Polarization: -102.99 SS G_CDS: -5.16 Total: -108.15 kcal Atomic # 8 Polarization: -47.89 SS G_CDS: -0.09 Total: -47.98 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 1.68 Total: 43.15 kcal Total: -71.59 4.62 -66.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892472599.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.558 kcal (2) G-P(sol) polarization free energy of solvation -71.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds