Wall clock time and date at job start Sat Apr 11 2020 07:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46896 * 111.00022 * 2 1 4 4 C 1.50695 * 109.47490 * 293.95190 * 3 2 1 5 5 H 1.08001 * 120.00064 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00398 * 179.97438 * 4 3 2 7 7 N 1.31518 * 119.99705 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 120.00418 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.46956 * 59.99803 * 8 6 4 10 10 H 1.48493 * 109.47403 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.46797 * 300.00143 * 8 6 4 12 12 C 1.46897 * 111.00036 * 123.95670 * 2 1 3 13 13 C 1.53004 * 109.47420 * 66.04370 * 12 2 1 14 14 H 1.08998 * 109.46924 * 305.00385 * 13 12 2 15 15 O 1.42906 * 109.46892 * 64.99840 * 13 12 2 16 16 C 1.52993 * 109.47360 * 185.00010 * 13 12 2 17 17 N 1.46905 * 109.47039 * 180.02562 * 16 13 12 18 18 C 1.46901 * 110.99870 * 180.02562 * 17 16 13 19 19 C 1.50697 * 109.46943 * 180.02562 * 18 17 16 20 20 C 1.38366 * 119.85088 * 269.71859 * 19 18 17 21 21 C 1.37963 * 120.14110 * 179.76429 * 20 19 18 22 22 C 1.39564 * 119.85326 * 0.51267 * 21 20 19 23 23 C 1.47827 * 120.14216 * 179.72049 * 22 21 20 24 24 C 1.35771 * 126.58612 * 359.73601 * 23 22 21 25 25 N 1.34138 * 107.51744 * 179.89537 * 24 23 22 26 26 C 1.30353 * 108.90089 * 0.37445 * 25 24 23 27 27 O 1.33990 * 109.04257 * 359.76383 * 26 25 24 28 28 C 1.39572 * 119.71660 * 359.74275 * 22 21 20 29 29 C 1.37964 * 119.84750 * 0.02562 * 28 22 21 30 30 H 1.08994 * 109.46860 * 296.04367 * 1 2 3 31 31 H 1.08998 * 109.46744 * 56.04690 * 1 2 3 32 32 H 1.09004 * 109.47044 * 176.04407 * 1 2 3 33 33 H 1.08997 * 109.47453 * 53.95745 * 3 2 1 34 34 H 1.09009 * 109.46916 * 173.95393 * 3 2 1 35 35 H 0.97003 * 120.00087 * 179.97438 * 7 6 4 36 36 H 1.09001 * 109.47431 * 306.04688 * 12 2 1 37 37 H 1.08997 * 109.47363 * 186.04585 * 12 2 1 38 38 H 0.96709 * 113.99630 * 60.00107 * 15 13 12 39 39 H 1.09001 * 109.47393 * 60.00433 * 16 13 12 40 40 H 1.08998 * 109.47408 * 300.00078 * 16 13 12 41 41 H 1.00901 * 110.99869 * 56.04956 * 17 16 13 42 42 H 1.09004 * 109.47031 * 299.99620 * 18 17 16 43 43 H 1.08995 * 109.47111 * 59.99900 * 18 17 16 44 44 H 1.07996 * 119.92419 * 0.02769 * 20 19 18 45 45 H 1.08001 * 120.06702 * 180.28409 * 21 20 19 46 46 H 1.07999 * 126.23891 * 0.02562 * 24 23 22 47 47 H 1.08006 * 125.47718 * 179.73165 * 26 25 24 48 48 H 1.07999 * 120.07731 * 179.97438 * 28 22 21 49 49 H 1.08001 * 119.92504 * 179.97438 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0471 -1.2984 5 1 1.0740 1.5116 -2.0485 6 6 2.0269 3.3495 -1.5284 7 7 2.7120 4.0019 -0.6148 8 14 1.5820 4.1874 -3.1376 9 1 0.1047 4.2238 -3.2848 10 1 2.1142 5.5736 -3.1376 11 1 2.1738 3.4304 -4.2699 12 6 1.9954 -0.7660 1.1375 13 6 1.6314 -2.2427 0.9703 14 1 0.5532 -2.3389 0.8432 15 8 2.2955 -2.7696 -0.1801 16 6 2.0699 -3.0200 2.2130 17 7 1.7209 -4.4379 2.0521 18 6 2.1274 -5.2169 3.2293 19 6 1.7545 -6.6631 3.0278 20 6 0.5173 -7.1200 3.4461 21 6 0.1678 -8.4416 3.2602 22 6 1.0695 -9.3206 2.6586 23 6 0.7041 -10.7395 2.4619 24 6 -0.4651 -11.3308 2.8179 25 7 -0.3898 -12.6216 2.4608 26 6 0.7724 -12.8410 1.9128 27 8 1.4717 -11.6982 1.8984 28 6 2.3180 -8.8545 2.2438 29 6 2.6532 -7.5294 2.4312 30 1 -0.3633 0.4512 0.9233 31 1 -0.3633 0.5740 -0.8524 32 1 -0.3633 -1.0253 -0.0709 33 1 1.5612 1.9273 0.8309 34 1 3.0798 1.3443 0.1083 35 1 2.9866 4.9180 -0.7768 36 1 1.5611 -0.3874 2.0628 37 1 3.0797 -0.6612 1.1756 38 1 3.2602 -2.7167 -0.1361 39 1 1.5633 -2.6181 3.0905 40 1 3.1482 -2.9237 2.3401 41 1 2.1268 -4.8168 1.2096 42 1 3.2060 -5.1356 3.3641 43 1 1.6206 -4.8304 4.1135 44 1 -0.1779 -6.4396 3.9151 45 1 -0.8000 -8.7959 3.5830 46 1 -1.3036 -10.8493 3.2989 47 1 1.1165 -13.7914 1.5320 48 1 3.0204 -9.5298 1.7779 49 1 3.6191 -7.1675 2.1111 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906543821.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:36:39 Heat of formation + Delta-G solvation = 5.674315 kcal Electronic energy + Delta-G solvation = -28131.477457 eV Core-core repulsion = 24060.188212 eV Total energy + Delta-G solvation = -4071.289245 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.72468 -39.79850 -38.33421 -36.18865 -35.23981 -35.17307 -32.97069 -32.51498 -31.44282 -30.33474 -28.99628 -27.15445 -26.45420 -25.04686 -23.86291 -23.39162 -22.66132 -22.21450 -21.37624 -21.04803 -20.17080 -18.54184 -17.03539 -17.02476 -16.63273 -16.39519 -16.12775 -15.70603 -15.53169 -15.11519 -14.86779 -14.64367 -14.58444 -14.29719 -14.10929 -13.82951 -13.72980 -13.41969 -13.33618 -13.01189 -12.75242 -12.45461 -12.07019 -11.88498 -11.86387 -11.64680 -11.43841 -11.33241 -11.11643 -11.02603 -10.88169 -10.77617 -10.67275 -10.29072 -10.26469 -10.02876 -9.63581 -9.39286 -9.13721 -8.68505 -8.43300 -8.42759 -7.19814 -6.02562 -4.03568 0.17061 0.98098 1.48578 2.19854 2.28218 3.32254 3.34589 3.38081 3.41788 3.75100 3.99200 4.14676 4.39985 4.44237 4.46036 4.52813 4.57379 4.66029 4.79374 4.90659 4.94439 5.11809 5.15362 5.18731 5.25245 5.30975 5.35436 5.36731 5.48669 5.50210 5.62195 5.64279 5.71354 5.80687 5.92906 6.01601 6.04989 6.18806 6.19895 6.32416 6.40205 6.45954 6.74287 6.78633 7.18654 7.20040 7.26739 7.32598 7.80155 7.93509 8.09824 8.20475 8.55613 9.04214 9.60646 11.08362 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.026961 B = 0.001398 C = 0.001376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.298221 B =20027.305756 C =20342.313399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.530 5.530 3 C 0.193 3.807 4 C -0.506 4.506 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.901 5.901 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.025 3.975 13 C 0.114 3.886 14 H 0.104 0.896 15 O -0.546 6.546 16 C 0.027 3.973 17 N -0.679 5.679 18 C 0.094 3.906 19 C -0.066 4.066 20 C -0.092 4.092 21 C -0.094 4.094 22 C -0.023 4.023 23 C 0.004 3.996 24 C -0.027 4.027 25 N -0.486 5.486 26 C 0.171 3.829 27 O -0.200 6.200 28 C -0.097 4.097 29 C -0.110 4.110 30 H 0.008 0.992 31 H 0.074 0.926 32 H 0.048 0.952 33 H -0.011 1.011 34 H 0.028 0.972 35 H 0.261 0.739 36 H 0.029 0.971 37 H 0.068 0.932 38 H 0.366 0.634 39 H 0.080 0.920 40 H 0.033 0.967 41 H 0.350 0.650 42 H 0.040 0.960 43 H 0.082 0.918 44 H 0.133 0.867 45 H 0.130 0.870 46 H 0.187 0.813 47 H 0.252 0.748 48 H 0.127 0.873 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.860 -30.414 11.330 32.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.254 5.254 3 C 0.068 3.932 4 C -0.545 4.545 5 H 0.082 0.918 6 C -0.146 4.146 7 N -0.541 5.541 8 Si 0.727 3.273 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.201 1.201 12 C -0.104 4.104 13 C 0.054 3.946 14 H 0.122 0.878 15 O -0.349 6.349 16 C -0.103 4.103 17 N -0.311 5.311 18 C -0.035 4.035 19 C -0.067 4.067 20 C -0.110 4.110 21 C -0.112 4.112 22 C -0.024 4.024 23 C -0.049 4.049 24 C -0.166 4.166 25 N -0.214 5.214 26 C -0.055 4.055 27 O -0.086 6.086 28 C -0.115 4.115 29 C -0.128 4.128 30 H 0.027 0.973 31 H 0.093 0.907 32 H 0.066 0.934 33 H 0.007 0.993 34 H 0.046 0.954 35 H 0.071 0.929 36 H 0.047 0.953 37 H 0.087 0.913 38 H 0.212 0.788 39 H 0.098 0.902 40 H 0.051 0.949 41 H 0.170 0.830 42 H 0.058 0.942 43 H 0.101 0.899 44 H 0.151 0.849 45 H 0.148 0.852 46 H 0.204 0.796 47 H 0.267 0.733 48 H 0.145 0.855 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.284 -30.927 11.013 32.909 hybrid contribution 1.603 1.444 -0.036 2.158 sum -0.681 -29.483 10.978 31.468 Atomic orbital electron populations 1.22261 0.88944 0.99655 1.00413 1.62023 1.06875 1.17403 1.39089 1.19735 0.95218 0.81638 0.96617 1.21138 1.34772 0.96867 1.01712 0.91837 1.24991 0.95306 0.97329 0.97017 1.69951 1.38470 1.11492 1.34144 0.86543 0.78718 0.78260 0.83786 1.20270 1.21392 1.20135 1.22707 1.00367 0.93848 0.93515 1.22003 0.98344 0.90711 0.83563 0.87787 1.86625 1.22766 1.83803 1.41735 1.22716 0.98634 0.88683 1.00241 1.60407 1.64260 1.01882 1.04567 1.20943 0.98418 0.89173 0.94960 1.19981 0.94161 0.95282 0.97238 1.20961 0.95979 0.94782 0.99314 1.21033 0.98771 0.93013 0.98384 1.17584 0.95652 0.86755 1.02374 1.21529 0.91559 0.89803 1.01988 1.23326 0.98669 0.89812 1.04796 1.70356 1.19656 1.17015 1.14363 1.28159 0.86806 0.90426 1.00065 1.84482 1.43616 1.18618 1.61879 1.21196 0.95397 0.96015 0.98935 1.21013 0.99819 0.92952 0.99025 0.97306 0.90698 0.93364 0.99310 0.95439 0.92915 0.95323 0.91329 0.78813 0.90208 0.94885 0.83046 0.94204 0.89939 0.84889 0.85237 0.79643 0.73257 0.85468 0.85528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.71 9.14 60.06 0.55 1.26 16 2 N -0.53 -11.40 4.70 -244.38 -1.15 -12.55 16 3 C 0.19 5.04 4.72 -4.98 -0.02 5.02 16 4 C -0.51 -14.35 8.46 -34.44 -0.29 -14.64 16 5 H 0.06 1.79 7.12 -52.49 -0.37 1.42 16 6 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -26.80 13.29 55.43 0.74 -26.06 16 8 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 C 0.03 0.43 4.60 -3.82 -0.02 0.41 16 13 C 0.11 1.57 3.19 -26.73 -0.09 1.48 16 14 H 0.10 1.58 6.34 -51.93 -0.33 1.25 16 15 O -0.55 -7.98 12.62 -35.23 -0.44 -8.42 16 16 C 0.03 0.29 5.39 -3.82 -0.02 0.27 16 17 N -0.68 -6.70 6.49 -115.06 -0.75 -7.45 16 18 C 0.09 0.74 5.81 -4.98 -0.03 0.72 16 19 C -0.07 -0.53 5.40 -104.54 -0.56 -1.09 16 20 C -0.09 -0.70 9.68 -39.64 -0.38 -1.08 16 21 C -0.09 -0.69 9.57 -39.19 -0.38 -1.06 16 22 C -0.02 -0.19 5.87 -104.98 -0.62 -0.81 16 23 C 0.00 0.04 7.07 -36.54 -0.26 -0.22 16 24 C -0.03 -0.22 11.29 -17.43 -0.20 -0.42 16 25 N -0.49 -4.37 11.27 -14.68 -0.17 -4.54 16 26 C 0.17 1.10 13.22 52.13 0.69 1.79 16 27 O -0.20 -1.64 10.59 4.22 0.04 -1.60 16 28 C -0.10 -0.78 9.73 -39.18 -0.38 -1.17 16 29 C -0.11 -0.84 9.68 -39.64 -0.38 -1.23 16 30 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.07 1.60 6.76 -51.93 -0.35 1.25 16 32 H 0.05 0.84 6.37 -51.93 -0.33 0.51 16 33 H -0.01 -0.30 8.12 -51.93 -0.42 -0.73 16 34 H 0.03 0.76 7.93 -51.92 -0.41 0.35 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 37 H 0.07 1.14 7.93 -51.93 -0.41 0.73 16 38 H 0.37 4.24 9.05 45.56 0.41 4.66 16 39 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.35 3.59 8.11 -39.29 -0.32 3.27 16 42 H 0.04 0.29 8.08 -51.93 -0.42 -0.13 16 43 H 0.08 0.62 8.08 -51.93 -0.42 0.20 16 44 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 45 H 0.13 0.67 7.04 -52.49 -0.37 0.30 16 46 H 0.19 1.08 7.30 -52.49 -0.38 0.70 16 47 H 0.25 0.33 8.06 -52.48 -0.42 -0.10 16 48 H 0.13 0.90 7.95 -52.49 -0.42 0.48 16 49 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 LS Contribution 409.32 15.07 6.17 6.17 Total: -1.00 -34.15 409.32 -9.70 -43.85 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -6.64 Total: 3.17 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: -2.49 Total: -9.33 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: -1.32 Total: -50.59 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: -0.40 Total: -10.02 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -34.15 -9.70 -43.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906543821.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.525 kcal (2) G-P(sol) polarization free energy of solvation -34.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds