Wall clock time and date at job start Sat Apr 11 2020 07:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46896 * 111.00022 * 2 1 4 4 C 1.50695 * 109.47490 * 293.95190 * 3 2 1 5 5 H 1.08001 * 120.00064 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00398 * 179.97438 * 4 3 2 7 7 N 1.31518 * 119.99705 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 120.00418 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.46956 * 59.99803 * 8 6 4 10 10 H 1.48493 * 109.47403 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.46797 * 300.00143 * 8 6 4 12 12 C 1.46897 * 111.00036 * 123.95670 * 2 1 3 13 13 C 1.53004 * 109.47420 * 66.04370 * 12 2 1 14 14 H 1.08998 * 109.46924 * 305.00385 * 13 12 2 15 15 O 1.42906 * 109.46892 * 64.99840 * 13 12 2 16 16 C 1.52993 * 109.47360 * 185.00010 * 13 12 2 17 17 N 1.46905 * 109.47039 * 180.02562 * 16 13 12 18 18 C 1.46901 * 110.99870 * 180.02562 * 17 16 13 19 19 C 1.50697 * 109.46943 * 180.02562 * 18 17 16 20 20 C 1.38366 * 119.85088 * 269.71859 * 19 18 17 21 21 C 1.37963 * 120.14110 * 179.76429 * 20 19 18 22 22 C 1.39564 * 119.85326 * 0.51267 * 21 20 19 23 23 C 1.47827 * 120.14216 * 179.72049 * 22 21 20 24 24 C 1.35771 * 126.58612 * 359.73601 * 23 22 21 25 25 N 1.34138 * 107.51744 * 179.89537 * 24 23 22 26 26 C 1.30353 * 108.90089 * 0.37445 * 25 24 23 27 27 O 1.33990 * 109.04257 * 359.76383 * 26 25 24 28 28 C 1.39572 * 119.71660 * 359.74275 * 22 21 20 29 29 C 1.37964 * 119.84750 * 0.02562 * 28 22 21 30 30 H 1.08994 * 109.46860 * 296.04367 * 1 2 3 31 31 H 1.08998 * 109.46744 * 56.04690 * 1 2 3 32 32 H 1.09004 * 109.47044 * 176.04407 * 1 2 3 33 33 H 1.08997 * 109.47453 * 53.95745 * 3 2 1 34 34 H 1.09009 * 109.46916 * 173.95393 * 3 2 1 35 35 H 0.97003 * 120.00087 * 179.97438 * 7 6 4 36 36 H 1.09001 * 109.47431 * 306.04688 * 12 2 1 37 37 H 1.08997 * 109.47363 * 186.04585 * 12 2 1 38 38 H 0.96709 * 113.99630 * 60.00107 * 15 13 12 39 39 H 1.09001 * 109.47393 * 60.00433 * 16 13 12 40 40 H 1.08998 * 109.47408 * 300.00078 * 16 13 12 41 41 H 1.00901 * 110.99869 * 56.04956 * 17 16 13 42 42 H 1.09004 * 109.47031 * 299.99620 * 18 17 16 43 43 H 1.08995 * 109.47111 * 59.99900 * 18 17 16 44 44 H 1.07996 * 119.92419 * 0.02769 * 20 19 18 45 45 H 1.08001 * 120.06702 * 180.28409 * 21 20 19 46 46 H 1.07999 * 126.23891 * 0.02562 * 24 23 22 47 47 H 1.08006 * 125.47718 * 179.73165 * 26 25 24 48 48 H 1.07999 * 120.07731 * 179.97438 * 28 22 21 49 49 H 1.08001 * 119.92504 * 179.97438 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0471 -1.2984 5 1 1.0740 1.5116 -2.0485 6 6 2.0269 3.3495 -1.5284 7 7 2.7120 4.0019 -0.6148 8 14 1.5820 4.1874 -3.1376 9 1 0.1047 4.2238 -3.2848 10 1 2.1142 5.5736 -3.1376 11 1 2.1738 3.4304 -4.2699 12 6 1.9954 -0.7660 1.1375 13 6 1.6314 -2.2427 0.9703 14 1 0.5532 -2.3389 0.8432 15 8 2.2955 -2.7696 -0.1801 16 6 2.0699 -3.0200 2.2130 17 7 1.7209 -4.4379 2.0521 18 6 2.1274 -5.2169 3.2293 19 6 1.7545 -6.6631 3.0278 20 6 0.5173 -7.1200 3.4461 21 6 0.1678 -8.4416 3.2602 22 6 1.0695 -9.3206 2.6586 23 6 0.7041 -10.7395 2.4619 24 6 -0.4651 -11.3308 2.8179 25 7 -0.3898 -12.6216 2.4608 26 6 0.7724 -12.8410 1.9128 27 8 1.4717 -11.6982 1.8984 28 6 2.3180 -8.8545 2.2438 29 6 2.6532 -7.5294 2.4312 30 1 -0.3633 0.4512 0.9233 31 1 -0.3633 0.5740 -0.8524 32 1 -0.3633 -1.0253 -0.0709 33 1 1.5612 1.9273 0.8309 34 1 3.0798 1.3443 0.1083 35 1 2.9866 4.9180 -0.7768 36 1 1.5611 -0.3874 2.0628 37 1 3.0797 -0.6612 1.1756 38 1 3.2602 -2.7167 -0.1361 39 1 1.5633 -2.6181 3.0905 40 1 3.1482 -2.9237 2.3401 41 1 2.1268 -4.8168 1.2096 42 1 3.2060 -5.1356 3.3641 43 1 1.6206 -4.8304 4.1135 44 1 -0.1779 -6.4396 3.9151 45 1 -0.8000 -8.7959 3.5830 46 1 -1.3036 -10.8493 3.2989 47 1 1.1165 -13.7914 1.5320 48 1 3.0204 -9.5298 1.7779 49 1 3.6191 -7.1675 2.1111 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906543821.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:36:38 Heat of formation + Delta-G solvation = -21.989539 kcal Electronic energy + Delta-G solvation = -28132.677051 eV Core-core repulsion = 24060.188212 eV Total energy + Delta-G solvation = -4072.488839 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -44.27999 -40.38106 -39.53137 -37.49013 -36.22881 -35.81603 -34.61680 -33.63181 -31.99364 -31.34630 -29.97026 -28.93823 -27.62053 -26.26119 -24.70290 -24.39794 -23.35003 -22.77771 -22.60421 -21.85541 -21.59722 -19.07667 -18.56487 -17.78444 -17.60675 -17.23795 -17.16827 -16.72943 -16.51490 -16.33485 -15.95254 -15.87200 -15.54699 -15.13940 -15.08282 -14.85780 -14.78866 -14.32657 -14.16803 -13.98152 -13.78106 -13.66279 -13.37787 -13.20077 -12.92921 -12.70927 -12.56710 -12.49501 -12.46612 -12.37925 -12.26853 -12.00890 -11.96763 -11.61893 -11.60387 -11.41342 -10.87977 -10.67666 -10.61061 -9.94802 -9.39545 -9.02361 -8.94827 -8.20476 -6.30344 -0.39328 0.42536 0.92886 1.41451 1.44534 1.52522 1.70198 1.71712 2.40591 2.71027 3.08213 3.12450 3.36039 3.52050 3.59612 3.70959 3.84213 3.89436 4.00138 4.03496 4.05705 4.15804 4.28870 4.29854 4.41543 4.46131 4.57010 4.61940 4.64220 4.71178 4.73524 4.74863 4.82845 4.83870 4.93512 5.07398 5.09517 5.17319 5.18737 5.31526 5.33307 5.37189 5.46101 5.61942 5.64886 5.89825 6.00656 6.06551 6.32948 6.42271 6.65067 6.65362 6.85496 6.97664 7.39414 8.90176 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.026961 B = 0.001398 C = 0.001376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.298221 B =20027.305756 C =20342.313399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.541 5.541 3 C 0.208 3.792 4 C -0.526 4.526 5 H 0.060 0.940 6 C 0.003 3.997 7 N -0.934 5.934 8 Si 0.969 3.031 9 H -0.268 1.268 10 H -0.282 1.282 11 H -0.269 1.269 12 C 0.025 3.975 13 C 0.127 3.873 14 H 0.093 0.907 15 O -0.561 6.561 16 C 0.039 3.961 17 N -0.685 5.685 18 C 0.098 3.902 19 C -0.075 4.075 20 C -0.098 4.098 21 C -0.097 4.097 22 C -0.033 4.033 23 C -0.015 4.015 24 C -0.033 4.033 25 N -0.522 5.522 26 C 0.185 3.815 27 O -0.211 6.211 28 C -0.109 4.109 29 C -0.113 4.113 30 H 0.012 0.988 31 H 0.053 0.947 32 H 0.076 0.924 33 H -0.039 1.039 34 H 0.004 0.996 35 H 0.264 0.736 36 H 0.034 0.966 37 H 0.068 0.932 38 H 0.379 0.621 39 H 0.086 0.914 40 H 0.045 0.955 41 H 0.348 0.652 42 H 0.049 0.951 43 H 0.089 0.911 44 H 0.144 0.856 45 H 0.148 0.852 46 H 0.202 0.798 47 H 0.295 0.705 48 H 0.131 0.869 49 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.147 -31.704 11.121 33.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.265 5.265 3 C 0.082 3.918 4 C -0.564 4.564 5 H 0.078 0.922 6 C -0.195 4.195 7 N -0.575 5.575 8 Si 0.793 3.207 9 H -0.193 1.193 10 H -0.207 1.207 11 H -0.194 1.194 12 C -0.105 4.105 13 C 0.068 3.932 14 H 0.111 0.889 15 O -0.367 6.367 16 C -0.091 4.091 17 N -0.318 5.318 18 C -0.030 4.030 19 C -0.076 4.076 20 C -0.116 4.116 21 C -0.115 4.115 22 C -0.034 4.034 23 C -0.068 4.068 24 C -0.171 4.171 25 N -0.250 5.250 26 C -0.040 4.040 27 O -0.098 6.098 28 C -0.127 4.127 29 C -0.131 4.131 30 H 0.030 0.970 31 H 0.072 0.928 32 H 0.094 0.906 33 H -0.021 1.021 34 H 0.023 0.977 35 H 0.073 0.927 36 H 0.052 0.948 37 H 0.087 0.913 38 H 0.227 0.773 39 H 0.105 0.895 40 H 0.063 0.937 41 H 0.167 0.833 42 H 0.067 0.933 43 H 0.107 0.893 44 H 0.162 0.838 45 H 0.166 0.834 46 H 0.219 0.781 47 H 0.310 0.690 48 H 0.149 0.851 49 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.576 -32.239 10.821 34.104 hybrid contribution 1.705 1.720 0.058 2.423 sum -0.871 -30.519 10.879 32.412 Atomic orbital electron populations 1.22224 0.87915 1.01041 0.99621 1.61933 1.07913 1.14856 1.41751 1.19387 0.93647 0.83965 0.94851 1.21453 1.34920 0.97535 1.02480 0.92162 1.25891 0.94986 0.97989 1.00657 1.70072 1.39330 1.11903 1.36166 0.85447 0.78813 0.77186 0.79240 1.19311 1.20708 1.19440 1.22832 1.00238 0.95337 0.92046 1.21802 0.97709 0.88801 0.84928 0.88892 1.86586 1.24070 1.83670 1.42365 1.22507 0.99328 0.88816 0.98411 1.60380 1.64606 1.01541 1.05227 1.20940 0.99025 0.88816 0.94247 1.20064 0.94489 0.95360 0.97671 1.21170 0.96123 0.95114 0.99239 1.21265 0.99427 0.92861 0.97978 1.17765 0.96037 0.86961 1.02649 1.21659 0.91951 0.90148 1.03028 1.23657 0.99098 0.89849 1.04521 1.70378 1.21122 1.17464 1.16060 1.29209 0.85854 0.91063 0.97874 1.84486 1.44047 1.19139 1.62100 1.21332 0.95630 0.96403 0.99345 1.21170 1.00361 0.92801 0.98818 0.96993 0.92778 0.90583 1.02118 0.97748 0.92679 0.94803 0.91335 0.77322 0.89539 0.93721 0.83314 0.93322 0.89306 0.83796 0.83436 0.78078 0.69018 0.85101 0.84358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.58 9.14 127.69 1.17 2.75 16 2 N -0.54 -23.34 4.70 -927.07 -4.36 -27.70 16 3 C 0.21 11.14 4.72 85.56 0.40 11.54 16 4 C -0.53 -30.23 8.46 25.60 0.22 -30.02 16 5 H 0.06 3.43 7.12 -2.91 -0.02 3.41 16 6 C 0.00 0.16 5.46 84.65 0.46 0.62 16 7 N -0.93 -56.31 13.29 21.45 0.28 -56.02 16 8 Si 0.97 44.62 29.54 68.60 2.03 46.65 16 9 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 10 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 12 C 0.02 0.82 4.60 86.31 0.40 1.21 16 13 C 0.13 3.33 3.19 30.59 0.10 3.43 16 14 H 0.09 2.66 6.34 -2.39 -0.02 2.65 16 15 O -0.56 -15.65 12.62 -148.98 -1.88 -17.53 16 16 C 0.04 0.75 5.39 86.30 0.47 1.21 16 17 N -0.69 -12.20 6.49 -517.93 -3.36 -15.56 16 18 C 0.10 1.36 5.81 85.56 0.50 1.86 16 19 C -0.08 -1.10 5.40 -19.81 -0.11 -1.21 16 20 C -0.10 -1.36 9.68 22.23 0.22 -1.15 16 21 C -0.10 -1.33 9.57 22.52 0.22 -1.12 16 22 C -0.03 -0.54 5.87 -20.10 -0.12 -0.66 16 23 C -0.02 -0.26 7.07 24.24 0.17 -0.08 16 24 C -0.03 -0.52 11.29 83.77 0.95 0.42 16 25 N -0.52 -8.91 11.27 -315.10 -3.55 -12.47 16 26 C 0.18 2.10 13.22 130.46 1.72 3.83 16 27 O -0.21 -3.31 10.59 -7.81 -0.08 -3.39 16 28 C -0.11 -1.70 9.73 22.53 0.22 -1.49 16 29 C -0.11 -1.63 9.68 22.23 0.22 -1.41 16 30 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.05 2.33 6.76 -2.39 -0.02 2.31 16 32 H 0.08 2.55 6.37 -2.38 -0.02 2.53 16 33 H -0.04 -2.25 8.12 -2.39 -0.02 -2.27 16 34 H 0.00 0.25 7.93 -2.38 -0.02 0.23 16 35 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 36 H 0.03 1.10 8.12 -2.39 -0.02 1.08 16 37 H 0.07 2.25 7.93 -2.39 -0.02 2.23 16 38 H 0.38 8.27 9.05 -74.05 -0.67 7.60 16 39 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.35 6.52 8.11 -89.69 -0.73 5.79 16 42 H 0.05 0.60 8.08 -2.39 -0.02 0.58 16 43 H 0.09 1.13 8.08 -2.39 -0.02 1.11 16 44 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 45 H 0.15 1.33 7.04 -2.91 -0.02 1.31 16 46 H 0.20 2.20 7.30 -2.91 -0.02 2.18 16 47 H 0.29 -0.03 8.06 -2.91 -0.02 -0.05 16 48 H 0.13 1.83 7.95 -2.91 -0.02 1.81 16 49 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 Total: -1.00 -73.99 409.32 -4.16 -78.15 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: -0.42 Total: 18.12 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: 7.19 Total: -10.25 kcal Atomic # 7 Polarization: -100.76 SS G_CDS: -10.99 Total: -111.75 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -1.96 Total: -20.92 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -73.99 -4.16 -78.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906543821.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.158 kcal (2) G-P(sol) polarization free energy of solvation -73.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds